# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_11 - 262 Mg_chelatase PF01078.16 207 0.00055 12.1 0.0 1 1 1.1e-05 0.0012 11.1 0.0 23 43 100 120 96 153 0.86 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_2 - 188 Methyltransf_12 PF08242.7 99 1.9e-05 18.1 0.0 1 1 3.1e-07 3.4e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 UPF0020 PF01170.13 180 7.7e-06 18.6 0.0 1 2 0.00033 0.018 7.6 0.0 104 119 18 33 7 88 0.73 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 UPF0020 PF01170.13 180 7.7e-06 18.6 0.0 2 2 0.00012 0.0067 9.0 0.0 28 54 163 189 158 221 0.67 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 UPF0020 PF01170.13 180 0.00095 11.8 0.0 1 1 5.8e-05 0.0032 10.1 0.0 18 43 40 65 32 130 0.71 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 RrnaAD PF00398.15 262 1.2e-08 27.3 0.0 1 1 1.4e-10 1.5e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 262 IstB_IS21 PF01695.12 178 3.4e-69 224.8 0.1 1 1 4.1e-71 4.5e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 565 3HCDH_N PF02737.13 180 0.0035 10.0 6.4 1 2 0.0047 0.52 2.9 2.4 1 30 99 128 99 134 0.93 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 3HCDH_N PF02737.13 180 0.0035 10.0 6.4 2 2 9e-05 0.0098 8.6 0.1 2 39 272 309 271 348 0.73 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 GIDA PF01134.17 392 2.8e-08 26.0 6.6 1 3 3.5e-10 3.8e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 GIDA PF01134.17 392 2.8e-08 26.0 6.6 2 3 0.038 4.1 -0.9 0.0 3 31 273 301 271 315 0.84 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 GIDA PF01134.17 392 2.8e-08 26.0 6.6 3 3 0.018 2 0.1 0.1 349 385 393 429 387 433 0.77 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_3 - 176 SSB PF00436.20 104 2.6e-41 132.8 0.4 1 1 3.4e-43 3.7e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 2066 # 2593 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 Methyltransf_18 PF12847.2 112 2e-10 34.3 0.0 1 1 3.9e-12 4.3e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_30 - 1757 UvrD_C_2 PF13538.1 104 1.4e-07 24.7 0.7 1 2 0.013 1.4 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_30 - 1757 UvrD_C_2 PF13538.1 104 1.4e-07 24.7 0.7 2 2 5.2e-08 5.7e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_19 - 565 Pyr_redox_2 PF07992.9 201 8.6e-44 142.8 0.0 1 1 3.2e-45 3.5e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_49 - 877 DUF87 PF01935.12 229 2.5e-07 23.7 0.0 1 1 6.9e-09 7.6e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_14 - 287 AAA_22 PF13401.1 131 4.1e-17 55.6 0.0 1 1 1.3e-18 7.3e-17 54.8 0.0 7 126 64 190 59 194 0.94 # 13977 # 14837 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 2_11 - 262 AAA_22 PF13401.1 131 3e-06 20.5 0.1 1 2 5.5e-06 0.0003 14.0 0.2 2 28 97 123 96 159 0.74 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 AAA_22 PF13401.1 131 3e-06 20.5 0.1 2 2 0.0041 0.23 4.7 0.0 87 117 151 196 132 204 0.62 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 565 DFP PF04127.10 185 0.00085 12.0 2.4 1 2 0.00039 0.043 6.4 0.4 28 51 105 128 99 156 0.83 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 DFP PF04127.10 185 0.00085 12.0 2.4 2 2 0.0014 0.15 4.7 0.1 32 53 281 302 276 336 0.77 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_11 - 262 AAA_3 PF07726.6 131 0.00056 12.6 0.0 1 1 1.2e-05 0.0013 11.4 0.0 2 72 102 171 101 201 0.70 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 565 NAD_binding_7 PF13241.1 103 3.7e-07 23.4 1.2 1 2 5.4e-05 0.0059 9.9 0.2 9 38 99 128 96 184 0.89 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 NAD_binding_7 PF13241.1 103 3.7e-07 23.4 1.2 2 2 1.4e-05 0.0015 11.8 0.1 8 41 270 306 264 380 0.74 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_11 - 228 N6_N4_Mtase PF01555.13 231 7.1e-37 120.1 0.0 1 2 1.3e-15 1.4e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 N6_N4_Mtase PF01555.13 231 7.1e-37 120.1 0.0 2 2 5.4e-25 5.9e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 262 AAA_17 PF13207.1 121 0.00012 15.9 0.0 1 1 3.1e-06 0.00017 15.4 0.0 2 38 102 133 101 232 0.74 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_31 - 742 AAA_17 PF13207.1 121 0.00035 14.4 0.0 1 1 1.7e-05 0.00095 13.0 0.0 3 28 189 218 187 303 0.70 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_49 - 877 MobB PF03205.9 140 0.0008 12.2 0.1 1 1 5.4e-05 0.0029 10.3 0.0 4 37 484 516 482 524 0.79 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_31 - 742 MobB PF03205.9 140 0.0011 11.7 0.0 1 1 5.3e-05 0.0029 10.4 0.0 7 34 192 219 188 225 0.89 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_11 - 262 PhoH PF02562.11 205 1.4e-08 27.2 0.1 1 1 2.9e-10 3.2e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 MCM PF00493.18 331 0.00022 13.1 0.0 1 2 7.5e-06 0.00082 11.2 0.0 56 120 98 162 82 172 0.81 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 MCM PF00493.18 331 0.00022 13.1 0.0 2 2 0.034 3.7 -0.8 0.0 161 211 190 237 186 259 0.71 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 565 NAD_binding_8 PF13450.1 68 3.8e-05 16.7 1.2 1 2 3.5e-07 3.8e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 NAD_binding_8 PF13450.1 68 3.8e-05 16.7 1.2 2 2 0.041 4.5 0.5 0.2 1 25 274 298 274 303 0.81 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 F420_oxidored PF03807.12 96 0.0077 9.7 4.1 1 2 0.0023 0.25 4.9 1.2 2 31 100 126 99 131 0.87 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 F420_oxidored PF03807.12 96 0.0077 9.7 4.1 2 2 0.0075 0.82 3.3 0.1 1 34 271 300 271 323 0.87 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_31 - 742 AAA_16 PF13191.1 185 4.6e-06 19.7 0.0 1 1 8.1e-07 2.2e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_14 - 287 AAA_16 PF13191.1 185 1.5e-05 18.1 0.0 1 2 3.1e-05 0.00085 12.3 0.0 8 52 45 94 43 146 0.70 # 13977 # 14837 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 2_14 - 287 AAA_16 PF13191.1 185 1.5e-05 18.1 0.0 2 2 0.015 0.42 3.6 0.0 139 183 134 184 114 186 0.72 # 13977 # 14837 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 2_11 - 262 AAA_16 PF13191.1 185 0.00016 14.7 0.1 1 1 1.4e-05 0.00037 13.5 0.1 23 51 98 126 84 166 0.79 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_55 - 123 AAA_16 PF13191.1 185 0.0015 11.6 0.1 1 1 9.1e-05 0.0025 10.8 0.1 22 48 86 112 80 119 0.88 # 48854 # 49222 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_2 - 188 Methyltransf_25 PF13649.1 101 0.00013 15.3 0.0 1 1 1.8e-06 0.00019 14.8 0.0 1 101 54 142 54 142 0.81 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_19 - 565 HI0933_like PF03486.9 409 2.4e-08 25.8 3.7 1 2 1.2e-06 0.00013 13.5 2.5 2 33 99 130 98 138 0.91 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 HI0933_like PF03486.9 409 2.4e-08 25.8 3.7 2 2 7.2e-06 0.00078 10.9 0.0 82 164 284 366 276 385 0.83 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_11 - 262 AAA_29 PF13555.1 62 1.5e-05 17.5 0.0 1 1 2.8e-07 3.1e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 565 FAD_binding_2 PF00890.19 417 4.7e-06 18.6 4.7 1 3 4.3e-08 4.7e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 FAD_binding_2 PF00890.19 417 4.7e-06 18.6 4.7 2 3 0.034 3.7 -0.8 0.1 143 204 311 369 297 388 0.72 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 FAD_binding_2 PF00890.19 417 4.7e-06 18.6 4.7 3 3 0.074 8.1 -1.9 0.0 376 402 388 408 377 424 0.82 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_11 - 262 AAA PF00004.24 132 1.1e-07 25.1 0.0 1 1 1.8e-09 1.9e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 Bac_DnaA PF00308.13 219 1.4e-10 34.2 0.0 1 1 2.1e-12 2.2e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 3_1 - 139 Ribosomal_S8 PF00410.14 129 0.0014 11.5 1.8 1 2 0.0059 0.64 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_1 - 139 Ribosomal_S8 PF00410.14 129 0.0014 11.5 1.8 2 2 0.00012 0.013 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 2_19 - 565 Pyr_redox_3 PF13738.1 203 1.4e-17 57.4 0.1 1 2 4.4e-14 4.8e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 Pyr_redox_3 PF13738.1 203 1.4e-17 57.4 0.1 2 2 9e-07 9.8e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_14 - 287 TniB PF05621.6 302 3.8e-201 659.2 5.6 1 1 3.8e-203 4.2e-201 659.0 5.6 1 285 1 285 1 286 1.00 # 13977 # 14837 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_31 - 742 TraG-D_C PF12696.2 128 8.5e-21 67.2 0.0 1 1 1.4e-22 1.5e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_11 - 262 AAA_33 PF13671.1 143 0.0004 13.3 0.2 1 1 8.9e-06 0.00097 12.1 0.2 2 36 102 142 102 255 0.67 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 KTI12 PF08433.5 270 0.00019 13.7 0.4 1 2 0.00013 0.007 8.6 0.0 4 81 102 172 101 174 0.68 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 KTI12 PF08433.5 270 0.00019 13.7 0.4 2 2 0.0073 0.4 2.8 0.1 34 59 232 257 212 261 0.77 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_55 - 123 KTI12 PF08433.5 270 0.00092 11.4 0.1 1 1 2.9e-05 0.0016 10.7 0.1 5 30 92 117 91 120 0.87 # 48854 # 49222 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_11 - 262 DnaB_C PF03796.10 259 0.00016 13.6 0.0 1 1 2.4e-06 0.00026 12.9 0.0 16 55 96 135 85 158 0.90 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_2 - 188 Methyltransf_26 PF13659.1 117 5.1e-14 45.4 0.0 1 1 1.6e-15 8.6e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 Methyltransf_26 PF13659.1 117 1.6e-12 40.6 0.1 1 2 7e-08 3.8e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 Methyltransf_26 PF13659.1 117 1.6e-12 40.6 0.1 2 2 1.9e-07 1.1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_30 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.6 15.6 1 3 0.06 2.2 0.8 0.0 41 86 223 269 218 282 0.84 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_30 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.6 15.6 2 3 2.9e-05 0.001 11.6 3.9 7 146 420 551 416 561 0.81 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_30 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.6 15.6 3 3 1.5e-43 5.4e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_11 - 262 AAA_30 PF13604.1 196 0.00051 12.7 0.2 1 1 4.2e-05 0.0015 11.1 0.1 16 49 97 131 87 162 0.73 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_31 - 742 AAA_30 PF13604.1 196 0.00068 12.3 0.0 1 1 3.9e-05 0.0014 11.2 0.0 21 57 188 224 180 230 0.85 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_49 - 877 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.5 0.1 1 2 2e-06 0.00022 13.7 0.0 39 63 477 505 464 508 0.84 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_49 - 877 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.5 0.1 2 2 0.015 1.7 1.1 0.0 75 166 531 626 530 669 0.82 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 188 MTS PF05175.9 170 9.4e-10 31.1 0.0 1 1 1.2e-11 1.3e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 Methyltrans_SAM PF10672.4 286 0.00079 11.3 0.0 1 1 9.9e-06 0.0011 10.9 0.0 196 261 113 173 93 180 0.78 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 Met_10 PF02475.11 200 0.00095 11.8 0.0 1 1 1.1e-05 0.0012 11.4 0.0 98 189 47 132 29 145 0.78 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_19 - 565 K_oxygenase PF13434.1 341 6.2e-06 18.3 0.0 1 3 0.0039 0.43 2.4 0.0 187 220 94 125 59 130 0.79 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 K_oxygenase PF13434.1 341 6.2e-06 18.3 0.0 2 3 3.3e-06 0.00037 12.5 0.0 132 231 218 308 202 332 0.82 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 K_oxygenase PF13434.1 341 6.2e-06 18.3 0.0 3 3 0.057 6.2 -1.4 0.0 132 160 346 369 314 377 0.67 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_11 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.9 0.0 1 2 0.00032 0.034 6.5 0.0 113 146 19 54 5 81 0.66 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.9 0.0 2 2 4e-05 0.0044 9.4 0.0 41 62 162 183 145 218 0.78 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 262 RuvB_N PF05496.7 234 0.00057 12.0 0.0 1 1 7.1e-06 0.00078 11.5 0.0 48 75 97 124 45 170 0.84 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_30 - 1757 AAA_19 PF13245.1 76 2e-07 23.8 2.0 1 1 1.7e-08 6.1e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_11 - 262 AAA_19 PF13245.1 76 4.1e-07 22.8 0.0 1 1 2.9e-08 1.1e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_55 - 123 AAA_19 PF13245.1 76 0.00073 12.3 0.0 1 1 3.2e-05 0.0012 11.7 0.0 13 37 91 115 82 122 0.78 # 48854 # 49222 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_49 - 877 AAA_10 PF12846.2 304 4.5e-49 160.5 0.0 1 1 1.5e-50 8e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_31 - 742 AAA_10 PF12846.2 304 1.6e-10 33.9 0.0 1 1 6.2e-11 3.4e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_19 - 565 FAD_oxidored PF12831.2 428 3.2e-06 19.4 3.6 1 1 2.9e-08 3.2e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 DAO PF01266.19 358 4.6e-09 28.6 11.7 1 3 1.4e-08 1.5e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 DAO PF01266.19 358 4.6e-09 28.6 11.7 2 3 0.032 3.4 -0.6 0.1 3 31 273 301 271 307 0.75 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 DAO PF01266.19 358 4.6e-09 28.6 11.7 3 3 9.4e-07 0.0001 14.3 0.5 152 208 314 372 307 433 0.74 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_2 - 188 Methyltransf_31 PF13847.1 152 3.7e-07 22.9 0.0 1 1 4.2e-09 4.5e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_30 - 1757 Viral_helicase1 PF01443.13 234 0.00042 12.9 0.0 1 2 0.00014 0.015 7.8 0.0 1 118 988 1121 988 1212 0.52 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_30 - 1757 Viral_helicase1 PF01443.13 234 0.00042 12.9 0.0 2 2 0.0066 0.72 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_19 - 565 NAD_binding_9 PF13454.1 156 3.1e-05 16.8 2.8 1 3 0.0081 0.89 2.3 0.1 1 41 101 135 101 162 0.81 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 NAD_binding_9 PF13454.1 156 3.1e-05 16.8 2.8 2 3 0.034 3.7 0.3 0.0 134 155 218 241 202 242 0.72 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 NAD_binding_9 PF13454.1 156 3.1e-05 16.8 2.8 3 3 6.6e-06 0.00072 12.4 0.1 112 155 321 366 311 367 0.85 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_11 - 262 DUF815 PF05673.8 250 0.00024 13.1 0.0 1 1 3.6e-06 0.0004 12.4 0.0 23 76 65 122 46 139 0.79 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 565 Pyr_redox PF00070.22 80 3.9e-20 65.1 6.0 1 2 1.4e-06 0.00016 15.2 1.5 1 31 99 129 99 131 0.96 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 Pyr_redox PF00070.22 80 3.9e-20 65.1 6.0 2 2 6.2e-18 6.8e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_31 - 742 TrwB_AAD_bind PF10412.4 386 4e-150 492.7 0.0 1 1 9.1e-152 5e-150 492.4 0.0 2 386 172 561 171 561 0.99 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_49 - 877 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.4 0.2 1 2 4.8e-08 2.6e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_49 - 877 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.4 0.2 2 2 0.054 3 -0.7 0.1 261 317 714 770 706 773 0.92 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_30 - 1757 AAA_11 PF13086.1 236 0.00023 13.8 0.0 1 1 4.2e-06 0.00023 13.8 0.0 2 75 969 1039 968 1059 0.81 # 21946 # 27216 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_11 - 262 AAA_11 PF13086.1 236 0.00049 12.7 0.3 1 1 1.7e-05 0.00095 11.8 0.3 6 44 89 142 82 260 0.72 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 Sigma54_activ_2 PF14532.1 138 0.00032 13.8 0.1 1 1 7.7e-06 0.00084 12.4 0.0 3 44 79 122 77 151 0.81 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_31 - 742 T4SS-DNA_transf PF02534.9 469 8e-10 30.8 0.0 1 1 3.5e-11 1.9e-09 29.6 0.0 264 363 382 478 198 511 0.82 # 27216 # 29441 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_49 - 877 T4SS-DNA_transf PF02534.9 469 0.00035 12.2 0.0 1 2 0.0047 0.26 2.8 0.0 105 182 534 605 471 624 0.82 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_49 - 877 T4SS-DNA_transf PF02534.9 469 0.00035 12.2 0.0 2 2 0.00023 0.012 7.1 0.0 319 378 712 770 663 772 0.91 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_14 - 287 AAA_32 PF13654.1 509 0.00015 13.5 0.1 1 2 6.6e-06 0.00072 11.3 0.0 8 81 34 112 26 124 0.86 # 13977 # 14837 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 2_14 - 287 AAA_32 PF13654.1 509 0.00015 13.5 0.1 2 2 0.02 2.2 -0.3 0.1 472 502 255 285 242 286 0.89 # 13977 # 14837 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_2 - 188 TIGR00755 TIGR00755 256 4e-09 28.8 0.0 1 1 4.9e-11 5.3e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 379 # 942 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 MethyltransfD12 PF02086.10 260 0.00061 12.3 0.0 1 2 0.022 2.4 0.5 0.0 178 188 21 31 14 91 0.83 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 MethyltransfD12 PF02086.10 260 0.00061 12.3 0.0 2 2 4e-05 0.0044 9.5 0.0 20 46 163 189 148 197 0.78 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_49 - 877 Pox_A32 PF04665.7 241 0.0008 11.7 0.1 1 1 2.3e-05 0.0025 10.1 0.0 7 38 474 505 470 520 0.85 # 43685 # 46315 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_19 - 565 AlaDh_PNT_C PF01262.16 168 2.6e-05 16.9 3.1 1 2 0.00051 0.056 6.0 0.8 15 50 92 127 89 130 0.90 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 565 AlaDh_PNT_C PF01262.16 168 2.6e-05 16.9 3.1 2 2 2.1e-05 0.0023 10.5 0.1 16 58 265 307 257 339 0.84 # 17911 # 19605 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_11 - 262 NACHT PF05729.7 166 0.0013 11.4 2.1 1 2 5.9e-05 0.0064 9.2 0.3 3 23 102 122 100 148 0.84 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 NACHT PF05729.7 166 0.0013 11.4 2.1 2 2 0.012 1.3 1.7 0.1 80 127 156 200 139 221 0.76 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 AAA_25 PF13481.1 194 0.00012 14.6 0.0 1 1 1.8e-06 0.0002 13.8 0.0 29 57 95 123 76 170 0.86 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 228 Methyltransf_15 PF09445.5 164 0.00031 13.3 0.0 1 2 0.012 1.4 1.5 0.0 53 79 4 29 2 33 0.91 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 Methyltransf_15 PF09445.5 164 0.00031 13.3 0.0 2 2 4.2e-05 0.0046 9.5 0.0 3 31 166 194 164 209 0.86 # 6686 # 7369 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 262 AAA_28 PF13521.1 163 9.7e-06 18.6 1.1 1 1 4.6e-07 5e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_11 - 262 AAA_5 PF07728.9 139 0.00021 14.1 0.2 1 1 4.3e-06 0.00047 12.9 0.2 1 19 101 119 101 243 0.78 # 9964 # 10749 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/df7cd43e-192a-4881-936f-38c929939bba # Target file: checkm_output/bins/pm1937/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1937/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/df7cd43e-192a-4881-936f-38c929939bba checkm_output/bins/pm1937/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:02:00 2020 # [ok]