# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 268 Methyltransf_12 PF08242.7 99 1.2e-07 23.7 0.1 1 1 9.7e-09 3.5e-07 22.2 0.0 1 97 55 149 55 151 0.86 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 268 UPF0020 PF01170.13 180 0.00019 12.5 0.0 1 1 1e-05 0.00038 11.5 0.0 58 107 70 119 23 126 0.81 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 cobW PF02492.14 178 8.9e-05 13.4 0.2 1 2 1.8e-05 0.00066 10.6 0.0 10 38 12 41 3 47 0.86 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 cobW PF02492.14 178 8.9e-05 13.4 0.2 2 2 0.019 0.7 0.7 0.1 114 146 115 147 71 170 0.78 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_5 - 351 Saccharop_dh PF03435.13 386 2.2e-06 18.3 0.1 1 1 8e-08 2.9e-06 17.9 0.1 1 102 118 242 118 276 0.93 # 2761 # 3813 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_7 - 268 Pox_MCEL PF03291.11 332 2.7e-05 14.5 0.1 1 1 1.2e-06 4.3e-05 13.9 0.1 51 134 39 121 36 132 0.89 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 MipZ PF09140.6 261 6.5e-15 46.3 0.9 1 2 1.3e-11 4.7e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 MipZ PF09140.6 261 6.5e-15 46.3 0.9 2 2 8.2e-07 2.9e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_7 - 268 Methyltransf_18 PF12847.2 112 1.5e-09 29.9 0.1 1 1 1.1e-10 4.1e-09 28.5 0.0 3 107 52 151 50 156 0.77 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 DUF1611 PF07755.6 301 1.3e-06 18.6 0.3 1 1 5.8e-08 2.1e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 ATP_bind_1 PF03029.12 238 1.7e-05 15.9 0.0 1 1 8.4e-07 3e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_7 - 268 Methyltransf_11 PF08241.7 95 1e-15 49.5 0.0 1 1 5.7e-17 2.1e-15 48.6 0.0 1 95 55 153 55 153 0.96 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 SRP54 PF00448.17 196 3.8e-05 14.6 0.4 1 1 3.6e-06 0.00013 12.9 0.3 11 54 12 50 2 142 0.73 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_10 - 634 AAA_15 PF13175.1 415 1.3e-14 45.4 4.4 1 2 1.8e-09 6.5e-08 23.4 1.2 4 115 6 196 3 262 0.66 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_10 - 634 AAA_15 PF13175.1 415 1.3e-14 45.4 4.4 2 2 3.7e-09 1.3e-07 22.3 0.1 339 413 302 372 282 374 0.81 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 2_8 - 207 AAA_17 PF13207.1 121 3.1e-05 16.3 0.0 1 1 1.1e-06 4.1e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_10 - 634 AAA_21 PF13304.1 303 1.3e-14 46.3 9.6 1 2 3.5e-16 1.3e-14 46.3 9.6 4 302 28 374 26 375 0.70 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_10 - 634 AAA_21 PF13304.1 303 1.3e-14 46.3 9.6 2 2 0.029 1.1 0.6 2.6 41 125 385 471 378 540 0.82 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 2_8 - 207 MobB PF03205.9 140 9.3e-07 20.1 0.4 1 1 1.4e-07 4.9e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 LpxK PF02606.9 326 1.9e-05 15.1 0.1 1 1 8.4e-07 3e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 ArsA_ATPase PF02374.10 305 1e-08 26.0 0.2 1 1 4.8e-10 1.7e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_5 - 351 Shikimate_DH PF01488.15 135 5e-05 14.9 0.4 1 1 4.1e-06 0.00015 13.4 0.3 8 57 111 164 107 244 0.84 # 2761 # 3813 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_10 - 634 SMC_N PF02463.14 220 3.4e-06 17.8 1.2 1 2 3.3e-07 1.2e-05 16.1 0.4 3 46 4 45 2 55 0.81 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_10 - 634 SMC_N PF02463.14 220 3.4e-06 17.8 1.2 2 2 0.089 3.2 -1.7 0.0 86 113 155 182 140 203 0.59 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 2_8 - 207 VirC1 PF07015.6 231 2.7e-15 47.5 0.2 1 1 1.5e-16 5.3e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 Fer4_NifH PF00142.13 273 5.7e-07 20.4 0.0 1 1 2.8e-08 9.9e-07 19.6 0.0 8 64 10 66 3 89 0.90 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_10 - 634 AAA_23 PF13476.1 202 4.1e-07 21.9 0.5 1 2 1.1e-08 4.1e-07 21.9 0.5 24 143 28 158 8 264 0.57 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_10 - 634 AAA_23 PF13476.1 202 4.1e-07 21.9 0.5 2 2 0.081 2.9 -0.4 1.0 106 154 412 462 358 623 0.56 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 2_8 - 207 CbiA PF01656.18 195 3.8e-29 92.9 1.6 1 1 2.7e-30 9.6e-29 91.6 1.6 1 142 4 123 4 163 0.77 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_7 - 268 Methyltransf_25 PF13649.1 101 5.8e-12 37.4 0.1 1 1 3e-13 1.1e-11 36.5 0.1 2 85 55 135 54 149 0.84 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 268 Ubie_methyltran PF01209.13 233 1.3e-10 32.2 0.0 1 1 5.1e-12 1.8e-10 31.7 0.0 41 154 44 156 38 178 0.84 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 AAA_31 PF13614.1 157 6.2e-09 27.4 0.3 1 2 9.4e-09 3.4e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 AAA_31 PF13614.1 157 6.2e-09 27.4 0.3 2 2 0.0047 0.17 3.3 0.0 115 152 74 109 58 114 0.83 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 NTPase_1 PF03266.10 168 0.00013 13.1 0.1 1 1 1.1e-05 0.00041 11.5 0.0 7 58 10 66 5 94 0.80 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_7 - 268 Methyltransf_26 PF13659.1 117 1.8e-06 19.5 0.0 1 1 6.9e-08 2.5e-06 19.0 0.0 3 80 53 128 51 201 0.89 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_5 - 351 2-Hacid_dh_C PF02826.14 178 1e-05 16.2 0.0 1 1 4.4e-07 1.6e-05 15.6 0.0 26 72 105 152 83 173 0.80 # 2761 # 3813 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 2_8 - 207 AAA_30 PF13604.1 196 0.00012 13.1 0.4 1 1 7.4e-06 0.00027 12.0 0.1 26 106 10 88 2 97 0.75 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_7 - 268 MTS PF05175.9 170 1.7e-06 19.0 0.0 1 1 7.3e-08 2.6e-06 18.4 0.0 31 99 50 119 34 153 0.85 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_10 - 634 DUF2813 PF11398.3 373 2.3e-06 18.3 0.0 1 2 3.2e-05 0.0011 9.4 0.0 25 87 26 86 1 95 0.77 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_10 - 634 DUF2813 PF11398.3 373 2.3e-06 18.3 0.0 2 2 0.00023 0.0081 6.6 0.0 262 330 309 378 286 398 0.70 # 10822 # 12723 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 2_8 - 207 AAA_10 PF12846.2 304 4.7e-06 17.6 0.0 1 1 2.3e-07 8.4e-06 16.8 0.0 11 47 12 50 10 69 0.82 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_5 - 351 ThiF PF00899.16 136 7.2e-34 108.0 0.2 1 1 3.3e-35 1.2e-33 107.3 0.2 1 127 114 241 114 249 0.91 # 2761 # 3813 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_7 - 268 Methyltransf_31 PF13847.1 152 4.8e-14 43.7 0.6 1 1 2e-15 7.4e-14 43.1 0.6 2 116 49 161 48 226 0.83 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 ArgK PF03308.11 267 3.9e-05 13.9 0.0 1 1 2.5e-06 9.2e-05 12.7 0.0 39 72 12 45 5 53 0.90 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_7 - 268 Methyltransf_23 PF13489.1 161 7.5e-07 20.5 0.1 1 1 4.8e-08 1.7e-06 19.3 0.1 22 120 50 160 39 228 0.73 # 5021 # 5824 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 207 AAA_24 PF13479.1 213 0.00022 12.3 0.6 1 2 1.7e-05 0.0006 10.9 0.1 12 88 11 95 3 99 0.81 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_8 - 207 AAA_24 PF13479.1 213 0.00022 12.3 0.6 2 2 0.078 2.8 -1.1 0.0 168 206 118 156 115 164 0.79 # 3340 # 3960 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3c95c990-484c-494f-8f5c-ec9e1dfe381f # Target file: checkm_output/bins/pm1933/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1933/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3c95c990-484c-494f-8f5c-ec9e1dfe381f checkm_output/bins/pm1933/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:56 2020 # [ok]