# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 260 IstB_IS21 PF01695.12 178 2e-66 213.6 0.0 1 1 2.2e-67 5.1e-66 212.3 0.0 2 177 56 233 55 234 0.96 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_22 PF13401.1 131 2.9e-07 21.6 0.0 1 2 4.1e-06 9.5e-05 13.4 0.1 4 28 101 125 98 148 0.75 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_22 PF13401.1 131 2.9e-07 21.6 0.0 2 2 0.00082 0.019 6.0 0.0 77 101 151 178 124 201 0.64 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_17 PF13207.1 121 8.9e-05 14.2 0.0 1 1 6.5e-06 0.00015 13.4 0.0 2 26 104 131 103 216 0.74 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 PhoH PF02562.11 205 7.3e-08 22.7 0.1 1 1 5e-09 1.1e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AFG1_ATPase PF03969.11 362 7e-05 12.5 0.0 1 1 5.8e-06 0.00013 11.6 0.0 64 214 103 251 81 258 0.78 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_16 PF13191.1 185 3.4e-06 18.0 2.4 1 3 1.2e-06 2.8e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_16 PF13191.1 185 3.4e-06 18.0 2.4 2 3 0.035 0.81 0.4 0.0 124 162 143 175 125 192 0.74 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_16 PF13191.1 185 3.4e-06 18.0 2.4 3 3 0.072 1.7 -0.6 0.0 38 62 217 242 207 252 0.75 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 274 AAA_13 PF13166.1 712 0.015 4.5 22.1 1 2 0.00037 0.0085 5.3 4.7 406 458 37 89 14 98 0.53 # 21963 # 22784 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_22 - 274 AAA_13 PF13166.1 712 0.015 4.5 22.1 2 2 0.0004 0.0091 5.2 9.2 82 158 110 170 93 203 0.50 # 21963 # 22784 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_5 - 260 CbiA PF01656.18 195 0.00022 11.5 0.0 1 1 1.3e-05 0.00029 11.1 0.0 3 42 105 145 104 254 0.75 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_2 - 480 KaiC PF06745.8 227 3.1e-05 14.0 0.0 1 1 2.7e-06 6.2e-05 13.0 0.0 18 53 256 291 252 294 0.93 # 1013 # 2452 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_5 - 260 AAA_14 PF13173.1 128 8.2e-08 23.1 0.0 1 2 1.7e-08 3.9e-07 20.9 0.0 3 97 102 203 100 219 0.64 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_14 PF13173.1 128 8.2e-08 23.1 0.0 2 2 0.048 1.1 0.0 0.0 14 46 215 247 212 257 0.80 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA PF00004.24 132 4.9e-09 27.3 0.0 1 1 4.1e-10 9.4e-09 26.4 0.0 1 70 104 175 104 207 0.82 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 Bac_DnaA PF00308.13 219 1.2e-09 28.9 0.0 1 1 7.8e-11 1.8e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 DUF258 PF03193.11 161 4.9e-05 13.4 0.0 1 1 3.7e-06 8.4e-05 12.6 0.0 26 59 92 125 80 153 0.82 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_9 - 160 TraG-D_C PF12696.2 128 2.6e-06 18.2 0.0 1 1 1.2e-07 2.8e-06 18.1 0.0 52 127 24 96 1 97 0.77 # 12410 # 12889 # 1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 1_5 - 260 NTPase_1 PF03266.10 168 5.3e-05 13.8 0.1 1 2 0.0015 0.035 4.6 0.1 2 30 104 132 103 143 0.82 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 NTPase_1 PF03266.10 168 5.3e-05 13.8 0.1 2 2 0.0003 0.0069 6.9 0.0 87 108 155 176 141 202 0.77 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_2 - 480 FtsK_SpoIIIE PF01580.13 205 0.00017 11.9 0.0 1 1 1.6e-05 0.00036 10.8 0.0 14 59 231 279 220 282 0.78 # 1013 # 2452 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_5 - 260 ABC_tran PF00005.22 137 0.00012 13.2 0.2 1 1 2e-05 0.00047 11.3 0.1 8 31 98 121 95 132 0.86 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_19 PF13245.1 76 0.00015 12.3 0.2 1 1 5.3e-05 0.0006 10.5 0.0 11 35 103 126 95 157 0.81 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_2 - 480 AAA_19 PF13245.1 76 0.00018 12.2 0.0 1 1 4.9e-05 0.00057 10.5 0.0 15 53 262 297 255 303 0.80 # 1013 # 2452 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_2 - 480 AAA_10 PF12846.2 304 1.7e-09 28.3 0.1 1 1 3.1e-10 3.6e-09 27.2 0.1 3 76 259 351 257 479 0.74 # 1013 # 2452 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_5 - 260 AAA_10 PF12846.2 304 8.5e-06 16.1 0.2 1 2 0.029 0.33 1.1 0.0 106 155 28 69 4 89 0.61 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_10 PF12846.2 304 8.5e-06 16.1 0.2 2 2 8.8e-06 0.0001 12.6 0.1 3 35 103 135 101 172 0.84 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 274 DUF3584 PF12128.3 1201 0.0042 5.2 22.4 1 2 2.8e-05 0.00063 7.9 3.3 598 657 32 91 25 98 0.90 # 21963 # 22784 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_22 - 274 DUF3584 PF12128.3 1201 0.0042 5.2 22.4 2 2 0.0008 0.018 3.0 11.3 608 674 111 177 105 184 0.83 # 21963 # 22784 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_2 - 480 TrwB_AAD_bind PF10412.4 386 4.9e-06 16.1 0.0 1 1 3.3e-07 7.5e-06 15.5 0.0 14 57 256 300 247 313 0.85 # 1013 # 2452 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_5 - 260 Sigma54_activ_2 PF14532.1 138 9.1e-05 13.4 0.0 1 1 6.3e-06 0.00014 12.7 0.0 9 64 87 144 84 229 0.70 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_24 PF13479.1 213 0.0003 11.2 0.1 1 1 3e-05 0.0007 10.0 0.1 5 23 103 121 99 127 0.85 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 NACHT PF05729.7 166 2.9e-05 14.6 0.0 1 1 2.1e-06 4.8e-05 13.9 0.0 3 49 104 151 102 200 0.81 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_25 PF13481.1 194 1.7e-07 21.7 0.1 1 1 2.2e-08 5.1e-07 20.1 0.1 9 60 72 128 68 201 0.77 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_28 PF13521.1 163 5.8e-05 13.9 0.0 1 1 5e-06 0.00011 13.0 0.0 1 49 103 156 103 171 0.73 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 260 AAA_5 PF07728.9 139 4.2e-06 17.4 0.0 1 1 4.6e-07 1e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 5544 # 6323 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4c5eb6c1-4b5a-4a97-80ff-2f5ab6d4a485 # Target file: checkm_output/bins/pm1927/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1927/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4c5eb6c1-4b5a-4a97-80ff-2f5ab6d4a485 checkm_output/bins/pm1927/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:52 2020 # [ok]