# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 18_2 - 247 Mg_chelatase PF01078.16 207 0.0017 12.3 0.3 1 2 0.063 23 -1.2 0.1 36 70 17 51 16 69 0.65 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 Mg_chelatase PF01078.16 207 0.0017 12.3 0.3 2 2 1.7e-05 0.0062 10.4 0.0 23 39 101 117 97 125 0.89 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 7_10 - 258 Eno-Rase_NADH_b PF12242.3 78 0.00027 15.5 0.1 1 1 3e-06 0.0011 13.5 0.2 37 65 6 32 1 44 0.77 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 3_21 - 254 UPF0020 PF01170.13 180 0.00017 16.0 0.0 1 1 1.8e-06 0.00067 14.0 0.0 15 126 87 185 76 221 0.72 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_7 - 203 RrnaAD PF00398.15 262 5.1e-05 17.1 0.0 1 1 2.1e-07 7.7e-05 16.5 0.0 47 92 98 144 80 183 0.85 # 4348 # 4956 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 18_2 - 247 IstB_IS21 PF01695.12 178 1.2e-65 215.0 0.0 1 1 5.3e-68 2e-65 214.3 0.0 2 177 55 230 54 231 0.99 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 4_13 - 418 MipZ PF09140.6 261 1.7e-11 38.4 0.1 1 2 1.4e-08 5.2e-06 20.4 0.1 2 39 116 156 115 170 0.78 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_13 - 418 MipZ PF09140.6 261 1.7e-11 38.4 0.1 2 2 5.4e-07 0.0002 15.2 0.0 77 126 236 287 213 297 0.75 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_13 - 418 YhjQ PF06564.7 244 0.0028 11.8 0.2 1 2 0.00059 0.22 5.6 0.1 6 41 119 157 115 170 0.78 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_13 - 418 YhjQ PF06564.7 244 0.0028 11.8 0.2 2 2 0.002 0.74 3.8 0.0 115 149 257 291 233 297 0.83 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 13_4 - 301 3HCDH_N PF02737.13 180 9.2e-07 23.4 0.7 1 1 3.2e-08 4e-06 21.3 0.7 1 40 6 45 6 116 0.91 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 7_10 - 258 3HCDH_N PF02737.13 180 0.0013 13.1 1.2 1 1 2.8e-05 0.0035 11.7 0.5 6 70 15 80 9 94 0.79 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 6_8 - 562 3HCDH_N PF02737.13 180 0.059 7.7 6.6 1 2 0.026 3.2 2.1 2.8 1 30 100 129 100 133 0.93 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 3HCDH_N PF02737.13 180 0.059 7.7 6.6 2 2 0.0009 0.11 6.9 0.1 2 36 273 307 272 359 0.75 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 GIDA PF01134.17 392 9.7e-06 19.4 5.3 1 2 5.2e-08 9.7e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 GIDA PF01134.17 392 9.7e-06 19.4 5.3 2 2 0.02 3.7 1.0 0.3 349 385 390 426 376 430 0.79 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 13_4 - 301 GIDA PF01134.17 392 0.019 8.6 3.4 1 1 0.00014 0.026 8.1 3.4 2 72 7 78 6 90 0.89 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_62 - 126 SSB PF00436.20 104 0.0019 12.8 0.1 1 2 3.3e-05 0.012 10.2 0.1 2 83 8 87 7 94 0.74 # 54925 # 55302 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_62 - 126 SSB PF00436.20 104 0.0019 12.8 0.1 2 2 0.033 12 0.6 0.0 43 60 92 109 88 112 0.83 # 54925 # 55302 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 3_21 - 254 Methyltransf_18 PF12847.2 112 6.9e-06 21.4 0.0 1 1 3.5e-08 1.3e-05 20.5 0.0 3 107 102 198 100 203 0.77 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_64 - 595 UvrD_C_2 PF13538.1 104 3.1e-12 41.3 0.0 1 1 4e-14 7.4e-12 40.1 0.0 47 103 496 562 450 563 0.79 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_12 - 680 UvrD_C_2 PF13538.1 104 7.4e-11 36.9 0.0 1 1 1.4e-12 2.7e-10 35.1 0.0 23 104 505 607 490 607 0.83 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 6_8 - 562 Pyr_redox_2 PF07992.9 201 2.6e-42 139.7 0.0 1 1 1.6e-44 5.9e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_6 - 276 Usp PF00582.21 140 8.4e-39 127.7 0.1 1 3 4e-19 1.5e-16 55.6 0.1 1 140 1 152 1 152 0.93 # 4669 # 5496 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 5_6 - 276 Usp PF00582.21 140 8.4e-39 127.7 0.1 2 3 0.001 0.39 5.7 0.0 4 24 160 180 158 200 0.74 # 4669 # 5496 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 5_6 - 276 Usp PF00582.21 140 8.4e-39 127.7 0.1 3 3 1.5e-21 5.5e-19 63.5 0.0 70 140 203 275 179 275 0.87 # 4669 # 5496 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 353 AAA_2 PF07724.9 171 1.8e-05 19.5 0.0 1 1 1.1e-07 4.2e-05 18.3 0.0 5 83 98 177 95 184 0.74 # 52771 # 53829 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_35 - 695 DUF87 PF01935.12 229 0.00064 14.3 0.0 1 1 4e-06 0.0015 13.1 0.0 25 68 200 242 189 278 0.89 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_21 - 254 MetW PF07021.7 193 0.00026 15.1 0.0 1 1 2.1e-06 0.00038 14.6 0.0 13 102 100 192 90 202 0.77 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_32 - 564 MetW PF07021.7 193 0.0024 12.0 0.0 1 1 2.3e-05 0.0042 11.2 0.0 18 83 424 487 410 499 0.85 # 28271 # 29962 # -1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 18_2 - 247 AAA_22 PF13401.1 131 2.9e-07 25.5 0.3 1 1 3.7e-06 0.00045 15.1 0.3 4 113 100 192 97 204 0.68 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_12 - 680 AAA_22 PF13401.1 131 4.4e-05 18.4 0.2 1 2 0.00019 0.024 9.6 0.0 4 65 17 75 13 106 0.77 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 680 AAA_22 PF13401.1 131 4.4e-05 18.4 0.2 2 2 0.002 0.25 6.2 0.0 41 108 152 232 112 246 0.62 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_35 - 695 AAA_22 PF13401.1 131 0.00062 14.7 0.1 1 2 0.00011 0.014 10.3 0.1 5 24 199 218 198 295 0.71 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_35 - 695 AAA_22 PF13401.1 131 0.00062 14.7 0.1 2 2 0.065 8 1.4 0.0 89 121 505 534 458 544 0.72 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_21 - 254 Methyltransf_11 PF08241.7 95 0.00079 14.7 0.0 1 1 4.7e-06 0.0017 13.6 0.0 5 86 109 191 105 198 0.82 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 5_17 - 476 DNA_methylase PF00145.12 335 1.2e-75 249.4 0.0 1 1 4.2e-78 1.6e-75 249.0 0.0 1 333 92 455 92 457 0.87 # 11407 # 12834 # 1 # ID=5_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 6_8 - 562 Trp_halogenase PF04820.9 454 0.017 8.5 3.3 1 1 8.1e-05 0.03 7.6 3.3 1 47 100 143 100 151 0.76 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 NAD_binding_7 PF13241.1 103 1.4e-05 20.0 1.2 1 2 1.9e-05 0.0069 11.4 0.2 9 38 100 129 96 164 0.90 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 NAD_binding_7 PF13241.1 103 1.4e-05 20.0 1.2 2 2 0.00049 0.18 6.9 0.1 8 45 271 314 264 382 0.66 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 417 N6_N4_Mtase PF01555.13 231 7.5e-22 72.6 0.0 1 1 3.1e-24 1.1e-21 72.1 0.0 1 227 128 389 128 393 0.81 # 2927 # 4177 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 18_2 - 247 AAA_17 PF13207.1 121 8.5e-05 18.1 0.3 1 1 6.5e-07 0.00024 16.7 0.1 2 49 103 154 102 223 0.67 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 16_4 - 370 ADH_zinc_N_2 PF13602.1 127 3.3e-05 19.5 0.0 1 1 2.1e-07 7.7e-05 18.4 0.0 2 121 231 362 230 363 0.63 # 2107 # 3216 # 1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 18_2 - 247 MobB PF03205.9 140 0.00059 14.3 0.0 1 1 4.1e-06 0.0015 13.0 0.0 3 32 103 132 101 139 0.94 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 16_4 - 370 ADH_zinc_N PF00107.21 130 4.8e-23 75.9 0.2 1 1 2e-25 7.5e-23 75.3 0.2 1 128 197 330 197 332 0.90 # 2107 # 3216 # 1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 4_13 - 418 ArsA_ATPase PF02374.10 305 2.2e-09 31.5 0.6 1 2 0.0088 3.2 1.4 0.0 214 274 14 76 6 85 0.80 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_13 - 418 ArsA_ATPase PF02374.10 305 2.2e-09 31.5 0.6 2 2 2.4e-10 9e-08 26.2 0.1 8 136 122 269 115 274 0.80 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 18_2 - 247 PhoH PF02562.11 205 6.5e-07 23.5 0.0 1 1 1.4e-08 2.5e-06 21.6 0.0 13 78 94 158 82 162 0.80 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_64 - 595 PhoH PF02562.11 205 1.2e-06 22.7 0.5 1 1 1.8e-07 3.3e-05 17.9 0.5 6 177 5 246 2 258 0.76 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 6_8 - 562 NAD_binding_8 PF13450.1 68 0.00025 15.8 1.2 1 1 6.9e-07 0.00025 15.8 1.2 1 35 103 136 103 155 0.91 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 13_4 - 301 F420_oxidored PF03807.12 96 8e-06 21.0 0.6 1 1 6.5e-08 2.4e-05 19.5 0.2 2 78 7 79 6 98 0.82 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 4_13 - 418 Fer4_NifH PF00142.13 273 0.00034 14.6 0.0 1 2 2.7e-06 0.00098 13.1 0.0 7 58 122 176 116 201 0.79 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_13 - 418 Fer4_NifH PF00142.13 273 0.00034 14.6 0.0 2 2 0.1 37 -1.9 0.0 30 65 324 358 321 391 0.61 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 18_2 - 247 Arch_ATPase PF01637.13 234 1.3e-05 19.7 0.1 1 1 2.2e-07 8.2e-05 17.1 0.1 18 94 99 167 85 198 0.70 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_16 PF13191.1 185 1.7e-05 19.6 0.3 1 3 0.045 17 0.1 0.3 102 140 19 59 4 81 0.58 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_16 PF13191.1 185 1.7e-05 19.6 0.3 2 3 6e-07 0.00022 16.0 0.0 10 41 86 117 75 133 0.88 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_16 PF13191.1 185 1.7e-05 19.6 0.3 3 3 0.088 32 -0.9 0.0 75 119 133 173 119 200 0.46 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_18 PF13238.1 129 0.00078 14.5 1.6 1 2 0.03 11 1.1 0.0 99 121 43 65 20 78 0.76 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_18 PF13238.1 129 0.00078 14.5 1.6 2 2 3.2e-05 0.012 10.7 0.6 1 21 103 123 103 207 0.70 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 7_10 - 258 adh_short PF00106.20 167 1.1e-23 78.7 2.0 1 1 4.4e-26 1.6e-23 78.2 2.0 3 166 10 175 8 176 0.89 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 4_13 - 418 CbiA PF01656.18 195 2.8e-22 73.8 0.0 1 1 2.2e-24 4e-22 73.3 0.0 1 178 117 348 117 365 0.73 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 18_2 - 247 CbiA PF01656.18 195 0.0014 12.8 1.6 1 2 0.057 11 0.1 0.1 13 26 17 30 17 33 0.89 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 CbiA PF01656.18 195 0.0014 12.8 1.6 2 2 2.9e-05 0.0054 10.9 0.0 9 31 110 132 103 134 0.92 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 15_3 - 167 Ribosomal_S13 PF00416.17 107 0.0013 13.9 0.1 1 1 8e-06 0.003 12.8 0.1 22 72 7 54 5 81 0.75 # 2315 # 2815 # 1 # ID=15_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.493 2_35 - 695 KaiC PF06745.8 227 7e-05 16.7 0.0 1 2 1.4e-05 0.0026 11.6 0.0 22 78 201 259 199 342 0.79 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_35 - 695 KaiC PF06745.8 227 7e-05 16.7 0.0 2 2 0.0078 1.4 2.6 0.0 48 105 357 414 348 425 0.85 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 18_2 - 247 KaiC PF06745.8 227 8.9e-05 16.4 0.2 1 2 0.00069 0.13 6.1 0.0 16 56 97 136 81 144 0.81 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 KaiC PF06745.8 227 8.9e-05 16.4 0.2 2 2 0.0001 0.019 8.8 0.1 98 153 143 196 134 217 0.83 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_14 PF13173.1 128 2.3e-05 19.1 0.1 1 1 1.6e-07 5.8e-05 17.8 0.0 2 96 100 200 99 210 0.70 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 5_1 - 468 B5 PF03484.10 70 0.0038 11.8 0.4 1 1 4.1e-05 0.015 9.9 0.0 6 51 95 139 93 141 0.91 # 291 # 1694 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 11_1 - 110 Rep_fac-A_3 PF08661.6 109 0.0016 13.1 0.2 1 2 0.032 12 0.7 0.0 6 27 14 35 10 43 0.83 # 55 # 384 # 1 # ID=11_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 11_1 - 110 Rep_fac-A_3 PF08661.6 109 0.0016 13.1 0.2 2 2 3.2e-05 0.012 10.3 0.3 1 45 44 88 44 104 0.76 # 55 # 384 # 1 # ID=11_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 6_8 - 562 HI0933_like PF03486.9 409 1.6e-08 28.1 5.0 1 2 4.3e-07 0.00016 15.0 2.8 2 33 100 131 99 139 0.91 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 HI0933_like PF03486.9 409 1.6e-08 28.1 5.0 2 2 1.7e-06 0.00063 13.0 0.0 83 163 286 362 281 379 0.85 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 FAD_binding_2 PF00890.19 417 3.5e-06 20.8 5.3 1 3 9.5e-09 3.5e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 FAD_binding_2 PF00890.19 417 3.5e-06 20.8 5.3 2 3 0.034 13 -0.8 0.2 142 204 311 366 286 382 0.67 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 FAD_binding_2 PF00890.19 417 3.5e-06 20.8 5.3 3 3 0.0019 0.69 3.4 0.1 373 402 374 405 368 419 0.86 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 18_2 - 247 AAA PF00004.24 132 7.8e-09 30.6 0.1 1 1 1.1e-10 2e-08 29.3 0.0 1 109 103 200 103 207 0.73 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_60 - 353 AAA PF00004.24 132 0.0008 14.4 0.0 1 1 9.4e-06 0.0017 13.3 0.0 1 74 99 178 99 237 0.73 # 52771 # 53829 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 18_2 - 247 Bac_DnaA PF00308.13 219 1.9e-11 38.7 0.0 1 1 1e-13 3.9e-11 37.7 0.0 35 139 101 202 94 206 0.88 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_64 - 595 UvrD_C PF13361.1 351 5.9e-42 139.1 0.0 1 1 5.9e-44 1.1e-41 138.2 0.0 2 348 254 564 253 567 0.86 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_12 - 680 UvrD_C PF13361.1 351 1e-22 75.8 0.0 1 2 0.0018 0.33 5.0 0.0 74 118 332 377 289 388 0.79 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 680 UvrD_C PF13361.1 351 1e-22 75.8 0.0 2 2 2e-22 3.7e-20 67.4 0.0 290 347 538 607 519 611 0.91 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 7_10 - 258 KR PF08659.5 181 3.5e-11 37.8 2.3 1 1 2e-13 7.2e-11 36.8 2.3 4 162 11 170 9 190 0.79 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 6_8 - 562 Thi4 PF01946.12 230 0.00099 13.0 0.4 1 1 6.3e-06 0.0023 11.7 0.4 19 70 100 150 95 158 0.88 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_60 - 353 Sigma54_activat PF00158.21 168 0.00046 14.4 0.0 1 1 7.9e-06 0.0029 11.8 0.0 20 120 94 189 78 223 0.65 # 52771 # 53829 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 6_8 - 562 Pyr_redox_3 PF13738.1 203 5.4e-18 60.5 0.1 1 3 1.5e-06 0.00055 14.8 0.0 164 199 95 130 48 134 0.85 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 Pyr_redox_3 PF13738.1 203 5.4e-18 60.5 0.1 2 3 5.8e-09 2.2e-06 22.6 0.0 115 201 219 304 174 306 0.81 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 Pyr_redox_3 PF13738.1 203 5.4e-18 60.5 0.1 3 3 5.6e-08 2.1e-05 19.4 0.0 89 147 317 372 309 431 0.82 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 13_4 - 301 NAD_binding_11 PF14833.1 122 1.7e-37 122.9 0.3 1 2 0.029 11 0.9 1.1 8 53 96 141 92 153 0.85 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 13_4 - 301 NAD_binding_11 PF14833.1 122 1.7e-37 122.9 0.3 2 2 4.7e-40 1.7e-37 122.9 0.3 1 121 170 289 170 290 0.98 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_21 - 254 N6_Mtase PF02384.11 311 1.5e-08 28.7 0.0 1 2 1.3e-05 0.0017 12.2 0.0 55 136 109 176 79 179 0.58 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_21 - 254 N6_Mtase PF02384.11 311 1.5e-08 28.7 0.0 2 2 6.1e-06 0.00076 13.3 0.0 161 200 179 219 176 247 0.76 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_32 - 564 N6_Mtase PF02384.11 311 9.2e-06 19.6 0.0 1 1 1.3e-07 1.6e-05 18.8 0.0 89 138 445 492 427 504 0.87 # 28271 # 29962 # -1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 11_6 - 164 N6_Mtase PF02384.11 311 0.0031 11.3 0.0 1 1 3.2e-05 0.0039 11.0 0.0 37 78 14 59 5 84 0.72 # 3001 # 3492 # 1 # ID=11_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.498 2_35 - 695 TraG-D_C PF12696.2 128 2.6e-11 38.2 0.0 1 1 1.5e-13 5.4e-11 37.2 0.0 2 112 505 617 504 631 0.82 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 13_4 - 301 NAD_binding_2 PF03446.10 163 1.6e-40 133.3 3.7 1 1 6.4e-43 2.4e-40 132.8 3.7 2 162 5 166 4 167 0.96 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 4_13 - 418 AAA_31 PF13614.1 157 7.3e-08 27.2 0.4 1 2 9.4e-08 3.5e-05 18.5 0.0 9 128 123 270 121 292 0.83 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 4_13 - 418 AAA_31 PF13614.1 157 7.3e-08 27.2 0.4 2 2 0.00088 0.33 5.6 0.1 14 89 299 381 284 410 0.72 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 18_2 - 247 NTPase_1 PF03266.10 168 0.00038 15.0 0.1 1 2 0.0004 0.15 6.5 0.0 2 30 103 131 102 133 0.83 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 NTPase_1 PF03266.10 168 0.00038 15.0 0.1 2 2 0.00053 0.19 6.1 0.0 89 112 156 178 139 205 0.70 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_33 PF13671.1 143 0.0003 15.4 0.1 1 2 0.072 27 -0.6 0.1 103 122 37 56 6 76 0.58 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_33 PF13671.1 143 0.0003 15.4 0.1 2 2 3.3e-06 0.0012 13.4 0.0 2 19 103 120 103 200 0.77 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 KTI12 PF08433.5 270 8.5e-05 16.6 0.2 1 1 5.4e-07 0.0002 15.4 0.0 4 94 103 188 102 210 0.77 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 DnaB_C PF03796.10 259 0.014 9.0 2.5 1 2 0.0002 0.073 6.6 0.0 20 48 101 129 92 143 0.77 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 DnaB_C PF03796.10 259 0.014 9.0 2.5 2 2 0.0048 1.8 2.1 0.1 111 144 142 175 138 188 0.79 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 3_21 - 254 Methyltransf_26 PF13659.1 117 3.6e-13 44.4 0.1 1 1 1.2e-14 1.5e-12 42.3 0.0 1 115 101 201 101 207 0.81 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_32 - 564 Methyltransf_26 PF13659.1 117 1.6e-08 29.3 0.0 1 1 2.8e-10 3.5e-08 28.3 0.0 3 116 422 516 416 517 0.80 # 28271 # 29962 # -1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 13_4 - 301 Methyltransf_26 PF13659.1 117 0.0091 10.8 6.3 1 1 0.00014 0.017 9.9 6.3 13 105 14 155 6 246 0.76 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 13_4 - 301 2-Hacid_dh_C PF02826.14 178 3.9e-06 20.9 0.1 1 1 3.8e-08 7.1e-06 20.0 0.1 36 146 4 118 2 124 0.86 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 16_4 - 370 2-Hacid_dh_C PF02826.14 178 0.0018 12.2 0.1 1 1 1.9e-05 0.0036 11.2 0.1 34 76 185 228 173 240 0.82 # 2107 # 3216 # 1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 6_8 - 562 XdhC_C PF13478.1 136 0.0031 12.6 1.0 1 2 0.08 30 -0.3 0.1 1 29 101 129 101 163 0.86 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 XdhC_C PF13478.1 136 0.0031 12.6 1.0 2 2 6.9e-05 0.025 9.6 0.1 1 66 273 351 273 371 0.64 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_64 - 595 AAA_30 PF13604.1 196 0.00013 16.3 0.3 1 2 4.4e-05 0.0054 11.1 0.0 4 66 6 66 4 90 0.72 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 AAA_30 PF13604.1 196 0.00013 16.3 0.3 2 2 0.027 3.3 2.0 0.0 91 132 187 227 162 261 0.83 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 18_2 - 247 AAA_30 PF13604.1 196 0.00044 14.6 0.0 1 1 3.1e-05 0.0038 11.6 0.0 18 103 100 171 82 189 0.74 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_12 - 680 AAA_30 PF13604.1 196 0.0011 13.3 0.0 1 2 0.00027 0.033 8.5 0.0 7 42 10 42 4 80 0.71 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 680 AAA_30 PF13604.1 196 0.0011 13.3 0.0 2 2 0.02 2.5 2.3 0.0 97 133 213 248 196 300 0.84 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 2_35 - 695 FtsK_SpoIIIE PF01580.13 205 4.6e-07 24.2 0.0 1 2 5.4e-07 0.0002 15.6 0.0 22 80 181 236 170 243 0.86 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_35 - 695 FtsK_SpoIIIE PF01580.13 205 4.6e-07 24.2 0.0 2 2 0.00047 0.17 6.0 0.0 169 204 510 542 500 543 0.81 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_21 - 254 MTS PF05175.9 170 2.7e-08 28.1 0.0 1 1 2.3e-10 4.3e-08 27.4 0.0 35 144 104 205 89 224 0.72 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 3_32 - 564 MTS PF05175.9 170 1.2e-06 22.8 0.0 1 1 1.1e-08 2e-06 22.0 0.0 94 156 475 532 447 543 0.80 # 28271 # 29962 # -1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 16_4 - 370 Met_10 PF02475.11 200 0.0003 15.2 0.0 1 1 1.4e-06 0.00051 14.4 0.0 98 143 183 229 178 305 0.81 # 2107 # 3216 # 1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 6_8 - 562 K_oxygenase PF13434.1 341 1.2e-05 19.0 0.2 1 3 0.0041 1.5 2.3 0.2 187 223 95 129 86 132 0.74 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 K_oxygenase PF13434.1 341 1.2e-05 19.0 0.2 2 3 2.9e-06 0.0011 12.7 0.0 130 231 217 309 200 339 0.79 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 K_oxygenase PF13434.1 341 1.2e-05 19.0 0.2 3 3 0.022 8 -0.0 0.0 139 160 345 366 314 376 0.63 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_32 - 564 Cons_hypoth95 PF03602.10 183 0.0019 12.3 0.0 1 1 9.7e-06 0.0036 11.5 0.0 105 138 471 502 451 516 0.71 # 28271 # 29962 # -1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 13_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 2.7e-05 18.4 0.2 1 2 2e-06 0.00074 13.7 0.1 2 39 6 43 5 50 0.92 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 13_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 2.7e-05 18.4 0.2 2 2 0.0061 2.3 2.3 0.0 107 139 86 117 82 126 0.77 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 18_2 - 247 RuvB_N PF05496.7 234 8.2e-06 19.7 0.2 1 1 5.2e-08 1.9e-05 18.5 0.1 51 114 101 174 95 223 0.75 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_12 - 680 AAA_19 PF13245.1 76 1.6e-10 35.4 0.1 1 1 3.6e-12 3.3e-10 34.4 0.1 14 75 21 86 11 87 0.87 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_64 - 595 AAA_19 PF13245.1 76 5.4e-09 30.5 0.0 1 1 8.1e-10 7.5e-08 26.8 0.0 3 75 12 86 10 87 0.84 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 18_2 - 247 AAA_19 PF13245.1 76 0.00036 15.0 0.2 1 1 1.2e-05 0.0011 13.4 0.0 10 46 101 132 95 136 0.77 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 4_13 - 418 AAA_19 PF13245.1 76 0.0013 13.2 0.0 1 1 3.6e-05 0.0034 11.9 0.0 20 48 125 152 123 182 0.82 # 15457 # 16710 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 7_10 - 258 NAD_binding_10 PF13460.1 183 0.00015 16.5 1.7 1 1 4.2e-06 0.0016 13.2 1.7 2 179 11 232 10 236 0.51 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 4_12 - 894 AAA_10 PF12846.2 304 3.1e-65 215.3 0.0 1 1 5e-67 4.6e-65 214.7 0.0 1 303 456 812 456 813 0.93 # 8937 # 11618 # 1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 2_35 - 695 AAA_10 PF12846.2 304 1.2e-16 55.7 0.0 1 1 2.7e-18 2.5e-16 54.7 0.0 2 296 199 578 198 585 0.73 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 18_2 - 247 AAA_10 PF12846.2 304 0.00044 14.5 0.0 1 1 6.9e-06 0.00064 13.9 0.0 2 33 101 132 100 195 0.92 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_64 - 595 AAA_10 PF12846.2 304 0.0011 13.2 0.3 1 1 4.7e-05 0.0043 11.2 0.0 1 25 16 40 16 49 0.80 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 7_10 - 258 adh_short_C2 PF13561.1 241 8.1e-36 118.7 0.9 1 1 2.5e-38 9.2e-36 118.5 0.9 5 240 16 252 13 253 0.91 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_64 - 595 AAA_12 PF13087.1 200 2.5e-08 28.3 0.1 1 3 0.00079 0.29 5.2 0.0 98 153 33 84 13 94 0.78 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 AAA_12 PF13087.1 200 2.5e-08 28.3 0.1 2 3 0.0026 0.97 3.5 0.0 5 52 240 287 237 400 0.74 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 AAA_12 PF13087.1 200 2.5e-08 28.3 0.1 3 3 5.1e-07 0.00019 15.6 0.0 136 196 497 563 409 567 0.81 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 6_8 - 562 FAD_oxidored PF12831.2 428 2.2e-06 21.7 3.8 1 2 5.9e-09 2.2e-06 21.7 3.8 1 41 100 139 100 159 0.83 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 FAD_oxidored PF12831.2 428 2.2e-06 21.7 3.8 2 2 0.01 3.7 1.2 0.0 84 120 305 341 261 364 0.71 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 DAO PF01266.19 358 2.5e-11 37.8 7.5 1 2 1.9e-08 7e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 DAO PF01266.19 358 2.5e-11 37.8 7.5 2 2 7.7e-09 2.8e-06 21.1 0.5 151 239 314 400 274 529 0.80 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 18_2 - 247 ResIII PF04851.10 184 0.00021 15.9 0.2 1 2 2.1e-06 0.00076 14.1 0.1 22 55 80 133 43 163 0.69 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 ResIII PF04851.10 184 0.00021 15.9 0.2 2 2 0.032 12 0.4 0.0 137 154 152 169 128 197 0.69 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 3_21 - 254 Methyltransf_31 PF13847.1 152 0.00052 14.4 0.0 1 1 2.6e-06 0.00097 13.5 0.0 7 106 104 197 99 240 0.78 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_12 - 680 Viral_helicase1 PF01443.13 234 6.8e-11 36.8 0.0 1 3 7.7e-07 0.00014 16.2 0.0 2 60 21 78 20 86 0.84 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 680 Viral_helicase1 PF01443.13 234 6.8e-11 36.8 0.0 2 3 0.00023 0.042 8.1 0.0 62 118 209 263 186 343 0.73 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 680 Viral_helicase1 PF01443.13 234 6.8e-11 36.8 0.0 3 3 0.0011 0.2 5.9 0.0 213 232 572 606 528 608 0.62 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_64 - 595 Viral_helicase1 PF01443.13 234 1e-07 26.4 0.1 1 3 0.0057 1 3.5 0.0 2 21 20 39 19 91 0.63 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 Viral_helicase1 PF01443.13 234 1e-07 26.4 0.1 2 3 0.0086 1.6 2.9 0.0 40 135 167 261 132 297 0.74 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 Viral_helicase1 PF01443.13 234 1e-07 26.4 0.1 3 3 7e-07 0.00013 16.3 0.0 183 232 494 562 401 563 0.72 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 5_22 - 273 ThiS-like PF14453.1 57 0.0029 12.2 0.0 1 1 1.7e-05 0.0061 11.2 0.0 25 54 165 194 146 196 0.94 # 15886 # 16704 # -1 # ID=5_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 7_10 - 258 Epimerase PF01370.16 236 0.00029 15.1 0.2 1 1 2.7e-06 0.001 13.3 0.2 2 227 11 238 10 248 0.69 # 8187 # 8960 # 1 # ID=7_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_64 - 595 DEAD PF00270.24 169 0.00011 16.5 0.7 1 1 3.8e-06 0.0014 12.9 0.7 4 105 8 107 5 222 0.77 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 6_8 - 562 Pyr_redox PF00070.22 80 3.5e-19 63.8 5.4 1 2 1.2e-06 0.00046 15.4 1.5 2 31 101 130 100 132 0.95 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 Pyr_redox PF00070.22 80 3.5e-19 63.8 5.4 2 2 3.2e-17 1.2e-14 49.3 0.1 1 72 272 342 272 351 0.91 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_35 - 695 DUF853 PF05872.7 504 0.00011 15.4 0.0 1 1 6.2e-07 0.00023 14.3 0.0 10 60 187 237 179 245 0.87 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_32 - 564 Methyltransf_27 PF13708.1 194 1.3e-56 185.9 0.1 1 1 1.5e-58 2.8e-56 184.9 0.0 2 194 93 296 92 296 0.95 # 28271 # 29962 # -1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_22 - 273 Methyltransf_27 PF13708.1 194 1.8e-46 152.8 0.0 1 1 1.2e-48 2.2e-46 152.6 0.0 3 194 72 266 70 266 0.95 # 15886 # 16704 # -1 # ID=5_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 2_35 - 695 TrwB_AAD_bind PF10412.4 386 1.8e-16 54.5 0.0 1 2 6.5e-07 0.00024 14.5 0.0 16 52 199 235 191 341 0.88 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_35 - 695 TrwB_AAD_bind PF10412.4 386 1.8e-16 54.5 0.0 2 2 8.1e-14 3e-11 37.2 0.0 164 345 412 604 391 646 0.77 # 24747 # 26831 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 3_21 - 254 N6-adenineMlase PF10237.4 162 2.7e-05 18.6 0.0 1 1 1.1e-07 4.2e-05 18.0 0.0 84 133 163 214 133 225 0.77 # 14905 # 15666 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_12 - 680 AAA_11 PF13086.1 236 0.00088 13.6 0.1 1 1 2.1e-05 0.0039 11.5 0.0 17 72 17 67 4 146 0.73 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 18_2 - 247 AAA_11 PF13086.1 236 0.0037 11.6 0.3 1 2 0.00032 0.06 7.6 0.0 14 41 97 124 48 148 0.83 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_11 PF13086.1 236 0.0037 11.6 0.3 2 2 0.029 5.4 1.2 0.0 184 200 154 169 145 173 0.84 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 Sigma54_activ_2 PF14532.1 138 0.0042 11.9 1.9 1 3 0.0075 2.8 2.8 0.2 85 121 19 55 15 57 0.89 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 Sigma54_activ_2 PF14532.1 138 0.0042 11.9 1.9 2 3 0.0044 1.6 3.5 0.0 20 38 99 117 85 126 0.85 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 Sigma54_activ_2 PF14532.1 138 0.0042 11.9 1.9 3 3 0.0047 1.7 3.4 0.0 98 132 126 160 120 164 0.89 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 3_7 - 203 TIGR00755 TIGR00755 256 9.2e-05 16.2 0.1 1 1 4.8e-07 0.00018 15.3 0.1 32 86 83 139 61 150 0.86 # 4348 # 4956 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 3_34 - 278 MethyltransfD12 PF02086.10 260 2.6e-47 156.2 0.0 1 1 8e-50 3e-47 156.0 0.0 1 256 13 255 13 259 0.91 # 31722 # 32555 # 1 # ID=3_34;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.445 1_12 - 680 Herpes_ori_bp PF02399.10 824 0.0013 11.4 0.0 1 1 7.3e-06 0.0027 10.4 0.0 52 109 20 83 9 102 0.80 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 13_4 - 301 TrkA_N PF02254.13 116 0.00012 16.8 0.0 1 1 1.6e-06 0.0003 15.6 0.0 1 42 7 48 7 79 0.86 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 16_4 - 370 TrkA_N PF02254.13 116 0.00027 15.7 0.0 1 1 2.6e-06 0.00048 14.9 0.0 1 45 190 236 190 246 0.83 # 2107 # 3216 # 1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 6_8 - 562 AlaDh_PNT_C PF01262.16 168 3.2e-06 21.6 2.3 1 2 7.8e-06 0.0015 12.9 0.3 16 50 94 128 80 131 0.87 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_8 - 562 AlaDh_PNT_C PF01262.16 168 3.2e-06 21.6 2.3 2 2 0.00023 0.043 8.1 0.1 19 60 269 310 260 341 0.84 # 5051 # 6736 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 13_4 - 301 AlaDh_PNT_C PF01262.16 168 0.00048 14.5 1.6 1 2 8.4e-06 0.0016 12.8 0.1 21 66 5 50 2 62 0.90 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 13_4 - 301 AlaDh_PNT_C PF01262.16 168 0.00048 14.5 1.6 2 2 0.056 10 0.4 0.2 13 42 84 113 72 117 0.84 # 2105 # 3007 # 1 # ID=13_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 18_2 - 247 AAA_24 PF13479.1 213 0.0011 13.3 0.0 1 1 4.6e-06 0.0017 12.7 0.0 5 77 102 170 98 176 0.77 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_12 - 680 UvrD-helicase PF00580.16 315 1.1e-38 128.0 0.2 1 1 7e-40 1.3e-37 124.5 0.2 2 307 6 260 5 266 0.90 # 9087 # 11126 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_64 - 595 UvrD-helicase PF00580.16 315 1.6e-30 101.2 2.8 1 3 1.1e-16 1.9e-14 48.4 0.0 2 105 5 91 4 95 0.92 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 UvrD-helicase PF00580.16 315 1.6e-30 101.2 2.8 2 3 1.1e-17 2e-15 51.6 0.3 208 314 145 248 107 249 0.86 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_64 - 595 UvrD-helicase PF00580.16 315 1.6e-30 101.2 2.8 3 3 0.072 13 -0.4 0.0 91 128 412 455 373 525 0.73 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 18_2 - 247 NACHT PF05729.7 166 0.0027 12.1 1.5 1 1 4.7e-05 0.017 9.5 0.4 3 24 103 124 101 205 0.90 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_25 PF13481.1 194 1.2e-05 19.5 0.0 1 2 1.3e-06 0.00023 15.3 0.0 24 58 90 125 76 135 0.82 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_25 PF13481.1 194 1.2e-05 19.5 0.0 2 2 0.021 3.9 1.6 0.0 131 151 150 170 122 173 0.78 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_64 - 595 AAA_25 PF13481.1 194 0.0013 12.9 0.0 1 1 3.5e-05 0.0066 10.6 0.0 17 63 3 46 1 62 0.78 # 56627 # 58411 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 3_7 - 203 Spermine_synth PF01564.12 246 0.0013 12.4 0.0 1 1 5e-06 0.0019 11.9 0.0 79 143 83 141 65 156 0.84 # 4348 # 4956 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 18_2 - 247 AAA_28 PF13521.1 163 0.00053 14.7 1.2 1 2 0.089 33 -0.9 0.2 51 70 36 55 8 70 0.60 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 18_2 - 247 AAA_28 PF13521.1 163 0.00053 14.7 1.2 2 2 3.1e-06 0.0011 13.6 0.0 2 48 103 154 102 216 0.84 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_60 - 353 AAA_5 PF07728.9 139 9e-34 110.9 0.0 1 1 7.9e-36 1.5e-33 110.3 0.0 1 139 98 238 98 238 0.96 # 52771 # 53829 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 18_2 - 247 AAA_5 PF07728.9 139 0.0019 12.7 1.0 1 1 1.6e-05 0.0029 12.1 0.1 1 16 102 117 102 235 0.94 # 1730 # 2470 # 1 # ID=18_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.570 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/236957e5-8c3a-4ad9-82c3-3c37ed216e9b # Target file: checkm_output/bins/pm1916/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1916/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/236957e5-8c3a-4ad9-82c3-3c37ed216e9b checkm_output/bins/pm1916/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:49 2020 # [ok]