# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 188 Methyltransf_12 PF08242.7 99 1.5e-05 18.1 0.0 1 1 3.1e-07 2.6e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 UPF0020 PF01170.13 180 6e-06 18.6 0.0 1 2 0.00033 0.014 7.6 0.0 104 119 18 33 7 88 0.73 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 UPF0020 PF01170.13 180 6e-06 18.6 0.0 2 2 0.00012 0.0052 9.0 0.0 28 54 163 189 158 221 0.67 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 188 UPF0020 PF01170.13 180 0.00074 11.8 0.0 1 1 5.8e-05 0.0025 10.1 0.0 18 43 40 65 32 130 0.71 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 cobW PF02492.14 178 0.00064 11.9 0.0 1 1 1.3e-05 0.0011 11.1 0.0 2 21 2 21 1 29 0.81 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_2 - 188 RrnaAD PF00398.15 262 9.5e-09 27.3 0.0 1 1 1.4e-10 1.2e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_11 - 176 SSB PF00436.20 104 2e-41 132.8 0.4 1 1 3.4e-43 2.9e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 7013 # 7540 # -1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 188 Methyltransf_18 PF12847.2 112 1.6e-10 34.3 0.0 1 1 3.9e-12 3.3e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 AAA_22 PF13401.1 131 1.3e-05 18.0 0.0 1 1 4.7e-07 4e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_11 - 228 N6_N4_Mtase PF01555.13 231 5.6e-37 120.1 0.0 1 2 1.3e-15 1.1e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 N6_N4_Mtase PF01555.13 231 5.6e-37 120.1 0.0 2 2 5.4e-25 4.6e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 AAA_17 PF13207.1 121 2e-06 21.3 0.0 1 1 4.8e-08 4.1e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00086 11.9 0.0 1 2 9.1e-05 0.0078 8.8 0.0 1 22 2 23 2 44 0.81 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00086 11.9 0.0 2 2 0.026 2.2 0.8 0.0 110 135 96 122 94 136 0.74 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 Zeta_toxin PF06414.7 201 6.8e-05 14.7 0.0 1 2 2.1e-05 0.0018 10.1 0.0 19 50 3 32 1 39 0.78 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 Zeta_toxin PF06414.7 201 6.8e-05 14.7 0.0 2 2 0.0045 0.38 2.4 0.0 94 123 73 102 57 160 0.77 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 123 AAA_16 PF13191.1 185 0.0011 11.6 0.1 1 1 2.3e-05 0.0019 10.8 0.1 22 48 86 112 80 119 0.88 # 6243 # 6611 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 7_3 - 181 AAA_18 PF13238.1 129 1.7e-09 30.8 0.0 1 1 3.9e-11 3.3e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_2 - 188 Methyltransf_25 PF13649.1 101 0.0001 15.3 0.0 1 1 1.8e-06 0.00015 14.8 0.0 1 101 54 142 54 142 0.81 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 AAA_33 PF13671.1 143 2.6e-10 33.0 0.0 1 1 4.3e-12 3.6e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 123 KTI12 PF08433.5 270 0.00072 11.4 0.1 1 1 1.4e-05 0.0012 10.7 0.1 5 30 92 117 91 120 0.87 # 6243 # 6611 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_2 - 188 Methyltransf_26 PF13659.1 117 4e-14 45.4 0.0 1 1 1.6e-15 6.7e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 Methyltransf_26 PF13659.1 117 1.2e-12 40.6 0.1 1 2 7e-08 3e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 Methyltransf_26 PF13659.1 117 1.2e-12 40.6 0.1 2 2 1.9e-07 8.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 188 MTS PF05175.9 170 7.4e-10 31.1 0.0 1 1 1.2e-11 1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 188 Methyltrans_SAM PF10672.4 286 0.00061 11.3 0.0 1 1 9.9e-06 0.00084 10.9 0.0 196 261 113 173 93 180 0.78 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 188 Met_10 PF02475.11 200 0.00074 11.8 0.0 1 1 1.1e-05 0.00095 11.4 0.0 98 189 47 132 29 145 0.78 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 Cons_hypoth95 PF03602.10 183 8.8e-06 17.9 0.0 1 2 0.00032 0.027 6.5 0.0 113 146 19 54 5 81 0.66 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 Cons_hypoth95 PF03602.10 183 8.8e-06 17.9 0.0 2 2 4e-05 0.0034 9.4 0.0 41 62 162 183 145 218 0.78 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 AAA_19 PF13245.1 76 0.00036 13.0 0.0 1 1 3.5e-05 0.0015 11.0 0.0 15 33 5 22 2 36 0.85 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 123 AAA_19 PF13245.1 76 0.00057 12.3 0.0 1 1 2.2e-05 0.00092 11.7 0.0 13 37 91 115 82 122 0.78 # 6243 # 6611 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_2 - 188 Methyltransf_31 PF13847.1 152 2.9e-07 22.9 0.0 1 1 4.2e-09 3.5e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 188 TIGR00755 TIGR00755 256 3.1e-09 28.8 0.0 1 1 4.9e-11 4.2e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 373 # 936 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 MethyltransfD12 PF02086.10 260 0.00048 12.3 0.0 1 2 0.022 1.9 0.5 0.0 178 188 21 31 14 91 0.83 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 MethyltransfD12 PF02086.10 260 0.00048 12.3 0.0 2 2 4e-05 0.0034 9.5 0.0 20 46 163 189 148 197 0.78 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 AAA_24 PF13479.1 213 8.5e-05 14.9 0.0 1 1 1.2e-06 0.00011 14.5 0.0 6 33 3 34 1 99 0.87 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 NACHT PF05729.7 166 7e-05 15.2 0.1 1 1 2.1e-06 0.00018 13.9 0.0 2 21 2 21 1 29 0.91 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_11 - 228 Methyltransf_15 PF09445.5 164 0.00024 13.3 0.0 1 2 0.012 1.1 1.5 0.0 53 79 4 29 2 33 0.91 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 228 Methyltransf_15 PF09445.5 164 0.00024 13.3 0.0 2 2 4.2e-05 0.0036 9.5 0.0 3 31 166 194 164 209 0.86 # 6661 # 7344 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 7_3 - 181 AAA_28 PF13521.1 163 0.00013 14.6 0.0 1 1 4.7e-06 0.0004 13.0 0.0 2 29 3 33 2 58 0.77 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 APS_kinase PF01583.15 157 1.1e-05 17.8 0.0 1 2 1e-05 0.00087 11.6 0.0 4 24 2 22 1 30 0.89 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_3 - 181 APS_kinase PF01583.15 157 1.1e-05 17.8 0.0 2 2 0.0021 0.18 4.1 0.1 34 72 107 147 91 157 0.86 # 1269 # 1811 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/af5f23fb-cb47-4b8e-8309-a9b13674bc02 # Target file: checkm_output/bins/pm1915/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1915/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/af5f23fb-cb47-4b8e-8309-a9b13674bc02 checkm_output/bins/pm1915/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:46 2020 # [ok]