# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_16 - 188 Methyltransf_12 PF08242.7 99 4.4e-05 16.3 0.0 1 1 1.2e-06 8.1e-05 15.5 0.0 1 99 55 144 55 144 0.84 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 RrnaAD PF00398.15 262 2.9e-09 28.6 0.0 1 1 5.5e-11 3.7e-09 28.3 0.0 9 113 29 128 24 148 0.89 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_32 - 260 IstB_IS21 PF01695.12 178 3.1e-73 237.3 0.1 1 2 0.049 3.3 -0.6 0.0 64 97 25 57 24 61 0.64 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 IstB_IS21 PF01695.12 178 3.1e-73 237.3 0.1 2 2 9.8e-75 6.6e-73 236.2 0.1 1 178 56 235 56 235 0.98 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_38 - 389 MipZ PF09140.6 261 2.9e-06 18.8 0.4 1 2 3.5e-06 0.00024 12.6 0.0 2 47 108 153 107 157 0.87 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_38 - 389 MipZ PF09140.6 261 2.9e-06 18.8 0.4 2 2 0.0011 0.077 4.4 0.0 88 134 224 270 197 292 0.84 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 2_14 - 174 SSB PF00436.20 104 7.4e-42 133.9 0.3 1 1 1.4e-43 9.5e-42 133.5 0.3 1 101 6 109 6 112 0.96 # 7688 # 8209 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.588 2_16 - 188 Methyltransf_18 PF12847.2 112 5.2e-10 32.3 0.0 1 1 1.5e-11 1e-09 31.3 0.0 4 109 53 146 50 148 0.89 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_17 - 511 DUF87 PF01935.12 229 0.00041 12.5 0.2 1 2 0.074 5 -0.8 0.1 143 214 76 146 33 157 0.61 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_17 - 511 DUF87 PF01935.12 229 0.00041 12.5 0.2 2 2 2.6e-05 0.0018 10.5 0.0 28 45 249 266 247 276 0.89 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 AAA_22 PF13401.1 131 1.1e-06 21.3 0.2 1 2 4.5e-05 0.0015 11.0 0.0 5 21 103 119 99 131 0.83 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_22 PF13401.1 131 1.1e-06 21.3 0.2 2 2 0.00073 0.025 7.1 0.0 88 103 154 181 126 203 0.66 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 AAA_22 PF13401.1 131 4.3e-05 16.0 0.1 1 1 5.8e-06 0.0002 13.9 0.0 6 35 246 275 243 329 0.80 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_17 - 511 ATP_bind_1 PF03029.12 238 0.00037 12.4 0.0 1 1 1.5e-05 0.001 11.0 0.0 1 23 249 271 249 276 0.90 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_3 - 262 N6_N4_Mtase PF01555.13 231 9.3e-12 37.2 0.0 1 1 1.5e-13 9.9e-12 37.1 0.0 1 106 21 116 21 200 0.86 # 1250 # 2035 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_17 - 511 AAA_17 PF13207.1 121 8.3e-05 15.8 0.1 1 1 8.1e-06 0.00055 13.2 0.0 1 21 246 266 246 318 0.79 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_38 - 389 ArsA_ATPase PF02374.10 305 1.2e-06 20.1 0.4 1 2 1.7e-06 0.00011 13.6 0.1 9 36 115 142 109 151 0.89 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_38 - 389 ArsA_ATPase PF02374.10 305 1.2e-06 20.1 0.4 2 2 0.0011 0.075 4.3 0.0 123 136 231 244 221 251 0.84 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_32 - 260 PhoH PF02562.11 205 7.1e-08 24.2 0.1 1 1 3.6e-09 2.4e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AFG1_ATPase PF03969.11 362 4.9e-05 14.6 0.2 1 1 2.8e-06 0.00019 12.6 0.2 63 216 103 254 43 259 0.72 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 T2SE PF00437.15 272 8.3e-49 158.2 0.0 1 1 1.8e-50 1.2e-48 157.7 0.0 5 259 109 376 105 388 0.89 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_26 - 148 Ribosomal_S19 PF00203.16 81 0.00015 13.8 0.0 1 1 3.8e-06 0.00026 13.0 0.0 31 61 73 104 65 130 0.88 # 20318 # 20761 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_17 - 511 Zeta_toxin PF06414.7 201 0.00018 13.0 0.0 1 1 5.2e-06 0.00035 12.0 0.0 18 41 246 269 237 279 0.88 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_38 - 389 VirC1 PF07015.6 231 4.5e-05 14.9 0.1 1 2 0.00028 0.019 6.3 0.0 4 42 109 147 107 154 0.91 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_38 - 389 VirC1 PF07015.6 231 4.5e-05 14.9 0.1 2 2 0.0003 0.02 6.2 0.1 84 139 235 290 222 312 0.77 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_17 - 511 Arch_ATPase PF01637.13 234 3.5e-05 15.9 0.0 1 1 1.9e-06 6.5e-05 15.0 0.0 6 44 231 268 230 298 0.84 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 Arch_ATPase PF01637.13 234 0.00064 11.8 0.1 1 1 6.9e-05 0.0023 9.9 0.0 8 37 90 119 87 140 0.79 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_16 PF13191.1 185 4.5e-05 15.9 1.1 1 2 0.052 3.5 -0.1 0.2 115 142 18 46 3 97 0.57 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_16 PF13191.1 185 4.5e-05 15.9 1.1 2 2 3e-06 0.0002 13.7 0.1 21 41 99 119 86 151 0.78 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 AAA_18 PF13238.1 129 0.00011 14.9 0.3 1 1 8.7e-06 0.00059 12.5 0.0 2 20 248 266 248 321 0.82 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_38 - 389 CbiA PF01656.18 195 6.8e-37 119.1 0.0 1 1 1.3e-38 9e-37 118.7 0.0 2 194 110 339 109 340 0.80 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_17 - 511 KaiC PF06745.8 227 3e-05 15.5 0.0 1 1 9.2e-07 6.3e-05 14.5 0.0 21 63 246 289 241 300 0.81 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 AAA_14 PF13173.1 128 8.1e-07 21.4 0.0 1 1 2.3e-08 1.5e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 AAA_29 PF13555.1 62 4.7e-05 15.3 0.0 1 1 4.7e-06 0.00016 13.6 0.0 21 40 243 261 232 268 0.81 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 AAA_29 PF13555.1 62 0.00051 12.0 0.0 1 1 2.9e-05 0.00098 11.1 0.0 19 59 98 139 89 141 0.72 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA PF00004.24 132 1.3e-07 24.3 0.0 1 1 3.2e-09 2.2e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 Bac_DnaA PF00308.13 219 7.3e-10 31.2 0.0 1 1 1.6e-11 1.1e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 Sigma54_activat PF00158.21 168 9.2e-05 14.3 0.1 1 1 8.2e-06 0.00056 11.8 0.1 18 53 98 133 82 198 0.72 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 2_16 - 188 N6_Mtase PF02384.11 311 0.00011 13.7 0.0 1 2 1.7e-05 0.0011 10.3 0.0 28 64 32 68 21 83 0.88 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 N6_Mtase PF02384.11 311 0.00011 13.7 0.0 2 2 0.019 1.3 0.3 0.0 127 137 114 124 103 133 0.82 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_32 - 260 DUF258 PF03193.11 161 8.8e-06 17.3 0.0 1 1 2e-07 1.3e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_38 - 389 AAA_31 PF13614.1 157 6.7e-10 31.5 0.0 1 2 1.4e-08 9.3e-07 21.3 0.0 2 49 108 155 107 195 0.91 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_38 - 389 AAA_31 PF13614.1 157 6.7e-10 31.5 0.0 2 2 0.00018 0.012 7.9 0.1 110 152 227 268 223 272 0.84 # 33453 # 34619 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_32 - 260 NTPase_1 PF03266.10 168 0.00016 13.8 0.1 1 2 0.0016 0.11 4.5 0.1 2 30 105 133 104 153 0.83 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 NTPase_1 PF03266.10 168 0.00016 13.8 0.1 2 2 0.00025 0.017 7.2 0.0 88 112 157 181 144 204 0.72 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 2_16 - 188 Methyltransf_26 PF13659.1 117 2.1e-13 42.7 0.0 1 1 1.2e-14 4e-13 41.8 0.0 2 114 52 147 51 150 0.91 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 3_3 - 262 Methyltransf_26 PF13659.1 117 4.8e-06 19.0 0.0 1 1 3.9e-07 1.3e-05 17.6 0.0 57 114 7 71 2 74 0.72 # 1250 # 2035 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_17 - 511 AAA_30 PF13604.1 196 0.00076 11.4 0.0 1 1 2e-05 0.0014 10.6 0.0 10 43 236 269 232 281 0.88 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_17 - 511 FtsK_SpoIIIE PF01580.13 205 3.5e-05 15.7 0.0 1 1 8.5e-07 5.7e-05 15.0 0.0 42 59 248 265 228 269 0.91 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 2_16 - 188 MTS PF05175.9 170 1.9e-09 29.5 0.0 1 1 3.7e-11 2.5e-09 29.1 0.0 31 140 50 148 41 165 0.85 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 Methyltrans_SAM PF10672.4 286 0.00061 11.0 0.0 1 1 1.3e-05 0.00087 10.5 0.0 196 261 113 173 100 180 0.77 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_32 - 260 ABC_tran PF00005.22 137 9.9e-05 15.0 0.3 1 1 2.4e-05 0.00082 12.1 0.0 8 30 99 121 93 136 0.86 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 ABC_tran PF00005.22 137 0.00035 13.3 0.0 1 1 2.2e-05 0.00076 12.2 0.0 13 33 246 266 241 288 0.88 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 RuvB_N PF05496.7 234 0.00025 12.5 0.0 1 1 6.5e-06 0.00044 11.7 0.0 50 119 102 182 92 190 0.65 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_19 PF13245.1 76 0.00029 13.0 0.0 1 1 1.1e-05 0.00072 11.7 0.0 10 37 103 129 96 154 0.81 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_10 PF12846.2 304 5.3e-06 18.3 0.7 1 3 0.055 1.9 0.1 0.0 127 169 38 82 8 95 0.68 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_10 PF12846.2 304 5.3e-06 18.3 0.7 2 3 1.9e-06 6.5e-05 14.8 0.1 1 33 102 134 102 171 0.89 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_10 PF12846.2 304 5.3e-06 18.3 0.7 3 3 0.048 1.6 0.3 0.0 202 247 142 192 134 202 0.68 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 AAA_10 PF12846.2 304 6.5e-06 18.1 0.0 1 1 3e-07 1e-05 17.4 0.0 4 29 247 272 244 298 0.85 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 ResIII PF04851.10 184 0.00025 13.3 0.0 1 2 6.9e-05 0.0047 9.1 0.0 8 50 89 127 49 135 0.78 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 ResIII PF04851.10 184 0.00025 13.3 0.0 2 2 0.0088 0.6 2.3 0.0 112 163 131 181 127 202 0.72 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 2_16 - 188 Methyltransf_31 PF13847.1 152 2.1e-06 19.7 0.0 1 1 3.9e-08 2.7e-06 19.4 0.0 5 119 52 162 48 183 0.83 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_17 - 511 TrwB_AAD_bind PF10412.4 386 2.1e-05 15.6 0.0 1 1 4.7e-07 3.2e-05 15.0 0.0 19 40 248 269 232 280 0.89 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 2_16 - 188 TIGR00755 TIGR00755 256 8.4e-09 27.1 0.0 1 1 1.6e-10 1.1e-08 26.7 0.0 8 105 29 123 25 134 0.90 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 Methyltransf_23 PF13489.1 161 9e-05 14.6 0.0 1 1 1.6e-06 0.00011 14.4 0.0 9 124 38 157 6 174 0.79 # 9058 # 9621 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_32 - 260 AAA_25 PF13481.1 194 1.7e-05 16.6 0.0 1 1 4.1e-07 2.8e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_28 PF13521.1 163 0.00081 11.7 1.8 1 2 0.063 4.3 -0.4 0.1 84 110 35 63 3 82 0.67 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_28 PF13521.1 163 0.00081 11.7 1.8 2 2 3e-05 0.002 10.4 0.2 1 43 104 151 104 172 0.70 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_17 - 511 Herpes_Helicase PF02689.9 819 0.00012 12.3 0.0 1 1 2.8e-06 0.00019 11.5 0.0 57 83 241 267 219 270 0.80 # 12372 # 13904 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_32 - 260 AAA_5 PF07728.9 139 2e-05 16.7 0.3 1 2 3.6e-06 0.00025 13.2 0.2 1 74 104 173 104 180 0.72 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 260 AAA_5 PF07728.9 139 2e-05 16.7 0.3 2 2 0.053 3.6 -0.3 0.0 90 123 225 258 218 259 0.63 # 26272 # 27051 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bc4f9672-f0b6-46d1-ad55-2f705a98930a # Target file: checkm_output/bins/pm1911/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1911/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bc4f9672-f0b6-46d1-ad55-2f705a98930a checkm_output/bins/pm1911/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:43 2020 # [ok]