# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_4 - 266 Mg_chelatase PF01078.16 207 0.00064 12.1 0.0 1 1 1e-05 0.0012 11.1 0.0 23 42 98 117 84 124 0.89 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 IstB_IS21 PF01695.12 178 8.8e-77 249.7 0.7 1 1 7.2e-78 2.9e-76 248.0 0.0 1 177 51 227 51 228 0.99 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 IstB_IS21 PF01695.12 178 5.5e-73 237.3 0.1 1 1 2.9e-74 1.2e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 IstB_IS21 PF01695.12 178 0.00061 12.4 0.1 1 2 0.00019 0.0077 8.8 0.0 44 65 24 45 16 58 0.85 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 IstB_IS21 PF01695.12 178 0.00061 12.4 0.1 2 2 0.045 1.8 1.1 0.0 102 145 148 190 129 201 0.75 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 1_53 - 215 MipZ PF09140.6 261 2.5e-08 26.4 2.0 1 2 0.00083 0.1 4.8 0.4 7 24 8 25 2 38 0.71 # 44216 # 44860 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_53 - 215 MipZ PF09140.6 261 2.5e-08 26.4 2.0 2 2 9.6e-09 1.2e-06 21.0 0.0 70 133 45 108 27 125 0.84 # 44216 # 44860 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 4_1 - 209 NB-ARC PF00931.17 287 0.00018 13.6 0.2 1 2 2.8e-06 0.00034 12.7 0.0 8 39 16 47 12 77 0.85 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 NB-ARC PF00931.17 287 0.00018 13.6 0.2 2 2 0.081 9.7 -2.0 0.0 83 83 136 136 82 196 0.58 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_22 PF13401.1 131 3.8e-07 23.5 0.3 1 2 7.7e-05 0.0031 10.8 0.0 5 21 98 114 94 134 0.85 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_22 PF13401.1 131 3.8e-07 23.5 0.3 2 2 0.00011 0.0044 10.3 0.1 77 121 147 195 132 203 0.72 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA_22 PF13401.1 131 1.9e-06 21.3 0.2 1 2 6.7e-05 0.0027 11.0 0.0 5 21 103 119 99 131 0.83 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 5_5 - 260 AAA_22 PF13401.1 131 1.9e-06 21.3 0.2 2 2 0.0011 0.044 7.1 0.0 88 103 154 181 126 203 0.66 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 AAA_22 PF13401.1 131 9.4e-06 19.0 0.7 1 1 9.7e-07 3.9e-05 17.0 0.7 4 112 27 183 24 200 0.51 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 MutS_V PF00488.16 235 5.4e-06 19.1 0.1 1 1 7e-08 8.4e-06 18.5 0.1 28 131 12 120 4 124 0.81 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 AAA_15 PF13175.1 415 3.5e-09 29.3 7.1 1 2 3e-06 0.00037 12.8 6.4 12 116 17 115 3 146 0.69 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 AAA_15 PF13175.1 415 3.5e-09 29.3 7.1 2 2 4.6e-07 5.6e-05 15.4 0.0 365 415 153 199 143 199 0.88 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_17 PF13207.1 121 1.2e-05 19.3 0.0 1 1 1.7e-06 6.8e-05 16.9 0.0 2 64 100 156 99 200 0.57 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 AAA_17 PF13207.1 121 3.3e-05 17.9 2.4 1 1 1.3e-06 5.3e-05 17.2 2.4 2 19 30 47 29 178 0.87 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 1_32 - 733 AAA_17 PF13207.1 121 0.0004 14.4 0.0 1 1 3e-05 0.0012 12.9 0.0 3 27 189 217 187 284 0.70 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 AAA_21 PF13304.1 303 3.5e-18 59.7 2.4 1 1 2e-18 2.4e-16 53.7 2.4 1 302 29 199 29 200 0.87 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 1_20 - 121 CTP_transf_2 PF01467.21 157 0.001 12.3 0.0 1 1 9.7e-06 0.0012 12.1 0.0 32 64 7 38 2 93 0.70 # 14417 # 14779 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 3_4 - 266 ArsA_ATPase PF02374.10 305 0.0008 11.6 0.0 1 1 1e-05 0.0012 11.0 0.0 6 38 102 134 98 169 0.91 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 PhoH PF02562.11 205 1.3e-07 24.2 0.1 1 1 7.1e-09 4.3e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 PhoH PF02562.11 205 1.8e-06 20.5 0.0 1 1 7.6e-08 4.6e-06 19.1 0.0 15 47 93 125 80 139 0.87 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AFG1_ATPase PF03969.11 362 1.7e-06 20.2 0.0 1 1 3.8e-08 2.3e-06 19.8 0.0 63 227 98 258 53 263 0.80 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AFG1_ATPase PF03969.11 362 8.7e-05 14.6 0.2 1 1 5.6e-06 0.00034 12.6 0.2 63 216 103 254 43 259 0.72 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 T2SE PF00437.15 272 0.00012 14.2 0.1 1 1 1.9e-06 0.00023 13.3 0.1 121 148 20 47 6 60 0.84 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 SMC_N PF02463.14 220 1e-07 24.6 3.3 1 1 5.5e-09 6.7e-07 21.9 3.3 24 204 27 201 15 208 0.71 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 1_53 - 215 VirC1 PF07015.6 231 0.00076 11.7 0.0 1 2 0.00083 0.1 4.8 0.0 3 29 3 29 1 36 0.81 # 44216 # 44860 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_53 - 215 VirC1 PF07015.6 231 0.00076 11.7 0.0 2 2 0.00071 0.086 5.0 0.0 87 190 77 181 59 193 0.65 # 44216 # 44860 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 4_1 - 209 Arch_ATPase PF01637.13 234 2.5e-05 17.2 1.8 1 1 6.5e-06 0.00026 13.9 1.8 18 148 25 183 17 196 0.57 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 Arch_ATPase PF01637.13 234 0.0004 13.3 0.0 1 1 5e-05 0.002 11.0 0.0 18 120 95 192 81 196 0.61 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 Arch_ATPase PF01637.13 234 0.0011 11.8 0.1 1 1 0.0001 0.0042 9.9 0.0 8 37 90 119 87 140 0.79 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 733 AAA_16 PF13191.1 185 5.4e-06 19.7 0.0 1 1 8e-07 2.4e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 AAA_16 PF13191.1 185 8.6e-06 19.0 0.1 1 1 3.8e-07 1.2e-05 18.6 0.1 19 52 22 55 16 195 0.73 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_16 PF13191.1 185 1e-05 18.7 1.7 1 2 0.053 1.6 1.8 0.0 128 173 26 88 4 95 0.61 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_16 PF13191.1 185 1e-05 18.7 1.7 2 2 1.1e-05 0.00033 13.9 0.9 23 51 96 124 88 195 0.82 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA_16 PF13191.1 185 7.9e-05 15.9 1.1 1 1 1.2e-05 0.00036 13.7 0.1 21 41 99 119 86 151 0.78 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 AAA_23 PF13476.1 202 0.00013 15.5 5.5 1 1 2.4e-06 0.00029 14.3 5.5 11 42 18 50 14 201 0.82 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 AAA_18 PF13238.1 129 1.5e-07 25.0 2.8 1 1 2.7e-07 1.6e-05 18.4 2.8 1 42 30 81 30 208 0.77 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_18 PF13238.1 129 0.00062 13.3 0.3 1 1 2.8e-05 0.0017 11.9 0.2 1 19 100 118 100 166 0.80 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 AAA_13 PF13166.1 712 0.0002 13.0 0.2 1 2 0.02 2.4 -0.5 0.2 20 49 31 59 22 122 0.73 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 AAA_13 PF13166.1 712 0.0002 13.0 0.2 2 2 5e-06 0.00061 11.5 0.0 495 571 131 196 88 201 0.82 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 1_53 - 215 CbiA PF01656.18 195 5.3e-10 32.2 0.1 1 1 1.2e-11 7.5e-10 31.7 0.1 1 161 4 143 4 175 0.74 # 44216 # 44860 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 3_4 - 266 CbiA PF01656.18 195 6.6e-05 15.5 0.1 1 1 2e-06 0.00012 14.7 0.1 9 63 107 171 100 248 0.67 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_14 PF13173.1 128 3.6e-08 26.6 0.0 1 1 3.7e-09 1.5e-07 24.6 0.0 3 96 98 197 96 206 0.72 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA_14 PF13173.1 128 1.4e-06 21.4 0.0 1 1 6.8e-08 2.7e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 AAA_14 PF13173.1 128 7.5e-05 15.8 1.0 1 1 4.5e-06 0.00018 14.6 1.0 1 22 26 47 26 193 0.73 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 AAA_29 PF13555.1 62 1.7e-06 20.7 0.2 1 1 6.9e-08 4.2e-06 19.5 0.1 17 40 22 44 16 50 0.81 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 5_5 - 260 AAA_29 PF13555.1 62 0.0009 12.0 0.0 1 1 2.9e-05 0.0017 11.1 0.0 19 59 98 139 89 141 0.72 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 AAA PF00004.24 132 4.9e-09 29.7 0.0 1 1 2.6e-10 1.6e-08 28.1 0.0 1 74 100 174 100 202 0.73 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA PF00004.24 132 2.2e-07 24.3 0.0 1 1 6.3e-09 3.8e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 Bac_DnaA PF00308.13 219 2.8e-12 39.9 0.0 1 1 7.9e-14 4.8e-12 39.1 0.0 36 139 99 199 71 212 0.87 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 Bac_DnaA PF00308.13 219 1.3e-09 31.2 0.0 1 1 3.2e-11 1.9e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 5_5 - 260 Sigma54_activat PF00158.21 168 0.00016 14.3 0.1 1 1 1.6e-05 0.00099 11.8 0.1 18 53 98 133 82 198 0.72 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 Sigma54_activat PF00158.21 168 0.0004 13.1 0.1 1 1 0.00031 0.019 7.6 0.1 19 42 94 117 82 191 0.79 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 MMR_HSR1 PF01926.18 116 0.0014 11.8 3.7 1 1 2.7e-05 0.0032 10.6 3.4 2 19 30 47 29 194 0.88 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 DUF258 PF03193.11 161 4.3e-07 22.4 0.2 1 1 1.1e-08 6.9e-07 21.7 0.2 26 55 17 47 3 73 0.84 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 5_5 - 260 DUF258 PF03193.11 161 1.6e-05 17.3 0.0 1 1 3.9e-07 2.4e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 733 TraG-D_C PF12696.2 128 9.3e-21 67.2 0.0 1 1 1.4e-22 1.7e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 NTPase_1 PF03266.10 168 0.00013 14.9 0.4 1 1 5.9e-06 0.00024 14.0 0.4 2 19 30 47 29 137 0.77 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 5_5 - 260 NTPase_1 PF03266.10 168 0.00028 13.8 0.1 1 2 0.0049 0.2 4.5 0.1 2 30 105 133 104 153 0.83 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 5_5 - 260 NTPase_1 PF03266.10 168 0.00028 13.8 0.1 2 2 0.00074 0.03 7.2 0.0 88 112 157 181 144 204 0.72 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 NTPase_1 PF03266.10 168 0.00037 13.4 0.0 1 2 0.0017 0.07 6.0 0.0 2 17 100 115 99 129 0.80 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 NTPase_1 PF03266.10 168 0.00037 13.4 0.0 2 2 0.0031 0.12 5.2 0.0 83 107 147 170 136 197 0.76 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_33 PF13671.1 143 0.00035 13.6 0.0 1 1 7.6e-06 0.00092 12.3 0.0 2 40 100 143 100 169 0.64 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 KTI12 PF08433.5 270 0.00078 11.8 0.0 1 1 1.2e-05 0.0014 11.0 0.0 4 82 100 170 99 198 0.78 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 733 AAA_30 PF13604.1 196 0.00074 12.3 0.0 1 1 1.3e-05 0.0016 11.2 0.0 21 57 188 224 180 230 0.85 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 FtsK_SpoIIIE PF01580.13 205 0.00076 12.1 0.0 1 1 1.1e-05 0.0014 11.3 0.0 29 56 18 45 6 67 0.87 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_35 PF14516.1 331 0.0005 11.9 0.3 1 3 0.0049 0.6 1.8 0.1 238 272 11 42 4 59 0.78 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_35 PF14516.1 331 0.0005 11.9 0.3 2 3 0.0043 0.53 2.0 0.0 25 75 91 141 77 153 0.77 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_35 PF14516.1 331 0.0005 11.9 0.3 3 3 0.00073 0.088 4.5 0.1 122 161 153 192 142 200 0.89 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 ABC_tran PF00005.22 137 9.1e-30 96.9 0.2 1 1 1.9e-31 1.2e-29 96.6 0.2 2 137 18 165 17 165 0.94 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 5_5 - 260 ABC_tran PF00005.22 137 0.00018 15.0 0.3 1 1 2.4e-05 0.0015 12.1 0.0 8 30 99 121 93 136 0.86 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 TIGR03263 TIGR03263 180 0.00011 14.7 0.2 1 2 8.9e-06 0.0011 11.5 0.1 3 19 29 45 27 54 0.88 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 TIGR03263 TIGR03263 180 0.00011 14.7 0.2 2 2 0.016 1.9 0.9 0.0 149 166 103 120 91 130 0.78 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_3 - 401 AviRa PF11599.3 246 0.0011 11.2 1.0 1 1 2.4e-05 0.0029 9.8 0.9 68 124 289 347 271 387 0.82 # 2098 # 3300 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.293 3_4 - 266 RuvB_N PF05496.7 234 1.3e-05 17.5 0.1 1 1 4.3e-07 2.6e-05 16.5 0.1 48 119 95 176 73 187 0.73 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 RuvB_N PF05496.7 234 0.00044 12.5 0.0 1 1 1.3e-05 0.00078 11.7 0.0 50 119 102 182 92 190 0.65 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 AAA_19 PF13245.1 76 8e-08 25.2 0.1 1 1 8.7e-09 3.5e-07 23.1 0.0 13 52 100 135 87 150 0.83 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA_19 PF13245.1 76 0.00051 13.0 0.0 1 1 3.2e-05 0.0013 11.7 0.0 10 37 103 129 96 154 0.81 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 AAA_19 PF13245.1 76 0.00057 12.8 0.0 1 1 3.1e-05 0.0012 11.8 0.0 9 32 26 48 14 56 0.85 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 1_32 - 733 AAA_10 PF12846.2 304 1.6e-10 34.0 0.0 1 1 9.8e-11 3e-09 29.9 0.0 3 296 187 494 186 500 0.69 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA_10 PF12846.2 304 9.5e-06 18.3 0.7 1 2 3.8e-06 0.00011 14.8 0.1 1 33 102 134 102 171 0.89 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 5_5 - 260 AAA_10 PF12846.2 304 9.5e-06 18.3 0.7 2 2 0.097 2.9 0.3 0.0 202 247 142 192 134 202 0.68 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 AAA_10 PF12846.2 304 0.00013 14.6 0.0 1 1 8.3e-06 0.00025 13.7 0.0 2 35 98 131 97 173 0.88 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 AAA_10 PF12846.2 304 0.00017 14.3 0.6 1 1 1.3e-05 0.0004 13.0 0.3 4 27 30 53 27 67 0.75 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_1 - 209 SbcCD_C PF13558.1 90 9.9e-05 15.4 0.1 1 1 4.3e-06 0.00053 13.1 0.1 30 88 134 179 108 181 0.82 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 5_5 - 260 ResIII PF04851.10 184 0.00045 13.3 0.0 1 2 6.9e-05 0.0083 9.1 0.0 8 50 89 127 49 135 0.78 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 5_5 - 260 ResIII PF04851.10 184 0.00045 13.3 0.0 2 2 0.0088 1.1 2.3 0.0 112 163 131 181 127 202 0.72 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 DEAD PF00270.24 169 0.00054 12.6 0.1 1 2 5.6e-05 0.0067 9.1 0.1 13 63 96 143 85 180 0.72 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 DEAD PF00270.24 169 0.00054 12.6 0.1 2 2 0.005 0.6 2.7 0.0 110 130 149 169 134 198 0.69 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 733 TrwB_AAD_bind PF10412.4 386 2.7e-150 493.4 0.0 1 1 2.7e-152 3.3e-150 493.1 0.0 2 386 172 561 171 561 0.99 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 Sigma54_activ_2 PF14532.1 138 0.0003 14.0 0.0 1 1 1e-05 0.0012 12.1 0.0 17 111 93 201 82 225 0.68 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 733 T4SS-DNA_transf PF02534.9 469 9.1e-10 30.8 0.0 1 1 2e-11 2.4e-09 29.4 0.0 264 361 382 476 198 500 0.83 # 24004 # 26202 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 ArgK PF03308.11 267 0.00014 13.8 0.0 1 1 4.5e-06 0.00027 12.9 0.0 27 66 95 134 81 136 0.85 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 ArgK PF03308.11 267 0.00044 12.2 0.0 1 1 1.1e-05 0.00069 11.6 0.0 15 50 13 48 4 59 0.85 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_24 PF13479.1 213 0.0009 12.0 0.0 1 1 1.3e-05 0.0016 11.2 0.0 5 23 99 117 95 152 0.86 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 NACHT PF05729.7 166 0.00016 14.5 0.4 1 1 6.1e-05 0.0037 10.1 0.4 3 21 100 118 98 217 0.88 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 NACHT PF05729.7 166 0.00085 12.2 0.0 1 1 3.1e-05 0.0019 11.1 0.0 2 19 29 46 28 54 0.89 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 3_4 - 266 AAA_25 PF13481.1 194 8.4e-07 21.7 0.1 1 1 3.7e-08 1.5e-06 20.9 0.1 22 65 81 130 60 193 0.70 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 260 AAA_25 PF13481.1 194 3e-05 16.6 0.0 1 1 1.2e-06 5e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 4_1 - 209 AAA_25 PF13481.1 194 0.00017 14.2 0.0 1 1 1.7e-05 0.00068 12.2 0.0 31 50 25 44 8 76 0.89 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 4_3 - 401 Methyltransf_15 PF09445.5 164 0.0078 8.9 7.3 1 1 0.0018 0.21 4.3 6.3 14 130 15 300 13 373 0.58 # 2098 # 3300 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.293 3_4 - 266 AAA_28 PF13521.1 163 6.6e-05 16.1 1.0 1 2 1.6e-05 0.00063 12.9 0.1 2 47 100 150 99 162 0.68 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 266 AAA_28 PF13521.1 163 6.6e-05 16.1 1.0 2 2 0.014 0.56 3.3 0.0 95 135 144 178 131 200 0.71 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 209 AAA_28 PF13521.1 163 0.00018 14.6 0.1 1 1 1e-05 0.00042 13.5 0.1 2 18 30 46 29 61 0.86 # 749 # 1375 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.305 5_5 - 260 AAA_28 PF13521.1 163 0.0014 11.7 1.8 1 1 8.9e-05 0.0036 10.4 0.2 1 43 104 151 104 172 0.70 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 5_5 - 260 AAA_5 PF07728.9 139 3.5e-05 16.7 0.3 1 1 7.2e-06 0.00044 13.2 0.2 1 74 104 173 104 180 0.72 # 3388 # 4167 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 3_4 - 266 AAA_5 PF07728.9 139 0.00027 13.8 4.3 1 1 4.8e-06 0.00029 13.8 0.8 1 19 99 117 99 190 0.84 # 1948 # 2745 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b2213ea2-3594-4746-82f9-49fa43e3fdc1 # Target file: checkm_output/bins/pm1910/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1910/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b2213ea2-3594-4746-82f9-49fa43e3fdc1 checkm_output/bins/pm1910/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:44 2020 # [ok]