# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 260 IstB_IS21 PF01695.12 178 1.1e-72 235.7 0.1 1 2 0.049 4 -0.6 0.0 64 97 25 57 24 61 0.64 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 IstB_IS21 PF01695.12 178 1.1e-72 235.7 0.1 2 2 3e-74 2.4e-72 234.7 0.0 1 178 56 235 56 235 0.98 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_37 - 389 MipZ PF09140.6 261 3.5e-06 18.8 0.3 1 2 3.5e-06 0.00029 12.6 0.0 2 47 108 153 107 157 0.87 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_37 - 389 MipZ PF09140.6 261 3.5e-06 18.8 0.3 2 2 0.0011 0.092 4.3 0.0 88 134 224 270 197 292 0.85 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_26 - 636 DUF87 PF01935.12 229 3.2e-06 19.7 0.0 1 1 1.4e-07 5.6e-06 18.9 0.0 8 63 174 228 169 273 0.86 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 350 DUF87 PF01935.12 229 0.00019 13.9 0.0 1 1 7.7e-06 0.00031 13.2 0.0 28 47 173 192 152 201 0.89 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 3_3 - 331 AAA_22 PF13401.1 131 4.1e-17 55.2 0.0 1 1 3.7e-18 7.6e-17 54.3 0.0 7 126 64 190 59 194 0.94 # 649 # 1641 # 1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 2_6 - 260 AAA_22 PF13401.1 131 1.9e-06 20.7 0.2 1 2 8.1e-05 0.0016 11.2 0.0 5 22 103 120 99 137 0.83 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA_22 PF13401.1 131 1.9e-06 20.7 0.2 2 2 0.0022 0.044 6.5 0.0 88 103 155 181 126 203 0.67 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_18 - 350 AAA_22 PF13401.1 131 2.2e-05 17.2 0.0 1 1 2.1e-06 4.2e-05 16.3 0.0 3 30 167 194 165 249 0.76 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_9 - 608 AAA_22 PF13401.1 131 0.00015 14.6 0.1 1 1 2.9e-05 0.00058 12.6 0.0 3 69 214 298 212 369 0.58 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_18 - 350 ATP_bind_1 PF03029.12 238 0.00017 13.8 0.0 1 1 3.1e-06 0.00025 13.2 0.0 1 23 173 195 173 202 0.89 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_9 - 608 PRK PF00485.13 194 0.00036 12.7 0.0 1 1 1.7e-05 0.0014 10.8 0.0 2 27 218 243 217 270 0.80 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 AAA_3 PF07726.6 131 0.00036 12.8 0.1 1 2 0.0031 0.25 3.6 0.2 59 110 22 74 11 87 0.79 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 AAA_3 PF07726.6 131 0.00036 12.8 0.1 2 2 0.0004 0.032 6.5 0.0 2 45 218 262 217 341 0.68 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_43 - 363 AAA_15 PF13175.1 415 2.4e-14 45.7 0.0 1 2 3.6e-10 2.9e-08 25.7 0.0 2 56 3 55 2 148 0.74 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_43 - 363 AAA_15 PF13175.1 415 2.4e-14 45.7 0.0 2 2 5.8e-08 4.7e-06 18.4 0.0 372 415 294 335 259 335 0.88 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_43 - 363 AAA_21 PF13304.1 303 4.3e-31 101.5 0.0 1 1 5e-32 2e-30 99.3 0.0 1 301 23 334 23 336 0.76 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 2_9 - 608 AAA_21 PF13304.1 303 9.6e-05 15.0 0.1 1 2 0.096 3.9 -0.1 5.3 88 188 78 171 61 208 0.57 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 AAA_21 PF13304.1 303 9.6e-05 15.0 0.1 2 2 2.4e-06 9.6e-05 15.0 0.1 2 145 218 363 217 370 0.82 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_18 - 350 MobB PF03205.9 140 5.3e-05 15.6 0.0 1 1 1.3e-06 0.0001 14.6 0.0 2 27 170 194 169 206 0.81 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_37 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.4 1 2 1.7e-06 0.00013 13.6 0.1 9 36 115 142 109 151 0.89 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_37 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.4 2 2 0.0011 0.09 4.3 0.0 123 136 231 244 221 251 0.84 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 260 PhoH PF02562.11 205 1.6e-08 26.6 0.3 1 2 0.013 0.52 2.1 0.0 48 111 5 67 1 77 0.79 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 PhoH PF02562.11 205 1.6e-08 26.6 0.3 2 2 9.2e-09 3.7e-07 22.1 0.0 11 48 94 131 84 145 0.81 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 608 PhoH PF02562.11 205 3.2e-06 19.1 0.0 1 1 1.8e-07 7.3e-06 17.9 0.0 11 85 207 280 204 303 0.78 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_18 - 350 T2SE PF00437.15 272 1.5e-49 160.9 0.0 1 1 4.7e-51 1.9e-49 160.5 0.0 7 267 26 318 21 322 0.93 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 T2SE PF00437.15 272 0.00023 12.7 0.0 1 1 1.1e-05 0.00043 11.8 0.0 114 155 512 562 379 565 0.67 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_18 - 350 Zeta_toxin PF06414.7 201 0.00077 11.2 0.0 1 1 2.2e-05 0.0018 10.0 0.0 17 48 169 201 160 224 0.79 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_43 - 363 SMC_N PF02463.14 220 9.7e-16 50.2 0.0 1 2 9.6e-12 7.8e-10 30.9 0.0 1 50 1 46 1 59 0.83 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_43 - 363 SMC_N PF02463.14 220 9.7e-16 50.2 0.0 2 2 9.3e-08 7.5e-06 17.9 0.0 138 207 273 340 73 356 0.83 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_37 - 389 VirC1 PF07015.6 231 4.6e-05 15.2 0.0 1 2 0.00028 0.023 6.3 0.0 4 42 109 147 107 154 0.91 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_37 - 389 VirC1 PF07015.6 231 4.6e-05 15.2 0.0 2 2 0.00026 0.021 6.5 0.0 84 139 235 290 220 316 0.77 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 260 Arch_ATPase PF01637.13 234 0.00071 11.9 0.1 1 1 2.5e-05 0.002 10.4 0.1 8 38 90 120 87 201 0.81 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 917 AAA_16 PF13191.1 185 1.2e-05 18.0 0.0 1 1 6.9e-06 0.00011 14.8 0.0 19 166 530 769 520 785 0.54 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 3_3 - 331 AAA_16 PF13191.1 185 1.6e-05 17.5 0.0 1 1 1.5e-05 0.00024 13.7 0.0 8 103 45 145 43 186 0.62 # 649 # 1641 # 1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 2_9 - 608 AAA_16 PF13191.1 185 3e-05 16.7 2.1 1 1 8.5e-06 0.00014 14.5 0.1 24 49 215 240 203 249 0.87 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_6 - 260 AAA_16 PF13191.1 185 6.6e-05 15.5 0.9 1 1 1e-05 0.00016 14.3 0.1 9 41 90 119 87 191 0.83 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_18 - 350 AAA_16 PF13191.1 185 0.00039 13.0 0.0 1 1 3.8e-05 0.00062 12.4 0.0 25 51 169 195 164 261 0.86 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_43 - 363 AAA_23 PF13476.1 202 6.3e-12 38.8 0.0 1 1 2.1e-13 8.6e-12 38.4 0.0 2 43 5 45 4 156 0.86 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_10 - 917 AAA_23 PF13476.1 202 0.00028 13.9 0.0 1 1 1.4e-05 0.00059 12.8 0.0 18 78 534 593 519 646 0.66 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 2_9 - 608 AAA_18 PF13238.1 129 0.00013 14.9 0.1 1 2 0.075 6.1 -0.2 0.2 63 92 88 130 38 146 0.58 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 AAA_18 PF13238.1 129 0.00013 14.9 0.1 2 2 1.5e-05 0.0012 11.8 0.0 1 42 218 259 218 329 0.74 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_43 - 363 AAA_13 PF13166.1 712 4.2e-05 14.7 0.0 1 1 7.2e-07 5.8e-05 14.2 0.0 12 39 17 44 7 73 0.77 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_37 - 389 CbiA PF01656.18 195 4.2e-37 120.0 0.0 1 1 6.9e-39 5.6e-37 119.6 0.0 2 194 110 339 109 340 0.80 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 260 AAA_14 PF13173.1 128 5.4e-07 22.2 0.0 1 1 1.2e-08 9.8e-07 21.4 0.0 2 96 102 203 101 221 0.67 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 917 AAA_29 PF13555.1 62 1.3e-05 17.4 0.0 1 1 1.6e-06 3.2e-05 16.1 0.0 18 47 531 559 516 574 0.77 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_43 - 363 AAA_29 PF13555.1 62 0.0001 14.5 0.0 1 1 1.4e-05 0.00028 13.0 0.0 14 58 12 55 2 60 0.69 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 AAA_29 PF13555.1 62 0.00028 13.1 0.0 1 1 3e-05 0.00062 12.0 0.0 23 40 168 185 160 191 0.85 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_6 - 260 AAA_29 PF13555.1 62 0.00062 12.0 0.0 1 1 5.8e-05 0.0012 11.1 0.0 19 59 98 139 89 141 0.72 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA PF00004.24 132 1.2e-07 24.6 0.0 1 1 5.2e-09 2.1e-07 23.8 0.0 1 74 105 180 105 214 0.77 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 608 AAA PF00004.24 132 0.0011 11.8 2.4 1 2 0.082 3.3 0.5 0.2 38 95 122 184 103 216 0.70 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 AAA PF00004.24 132 0.0011 11.8 2.4 2 2 0.00027 0.011 8.5 0.0 1 24 218 243 218 319 0.76 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_6 - 260 Bac_DnaA PF00308.13 219 1e-09 30.9 0.0 1 1 1.9e-11 1.5e-09 30.4 0.0 36 136 104 202 75 207 0.85 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 Sigma54_activat PF00158.21 168 6.4e-05 15.1 0.1 1 1 4.8e-06 0.00039 12.5 0.1 18 68 98 148 82 199 0.69 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_3 - 331 TniB PF05621.6 302 1.7e-201 659.8 5.7 1 1 2.6e-203 2.1e-201 659.6 5.7 1 287 1 287 1 300 0.98 # 649 # 1641 # 1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 2_6 - 260 DUF258 PF03193.11 161 7.5e-06 17.8 0.0 1 1 1.4e-07 1.2e-05 17.2 0.0 22 80 89 159 70 194 0.71 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_26 - 636 TraG-D_C PF12696.2 128 4.8e-10 32.0 0.0 1 1 1.8e-11 7.4e-10 31.4 0.0 7 94 406 496 400 527 0.77 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_10 - 917 TraG-D_C PF12696.2 128 0.00015 14.3 0.1 1 1 7.3e-06 0.00029 13.3 0.1 1 72 753 825 753 831 0.83 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_37 - 389 AAA_31 PF13614.1 157 7.8e-10 31.5 0.0 1 2 1.4e-08 1.1e-06 21.2 0.0 2 49 108 155 107 195 0.92 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_37 - 389 AAA_31 PF13614.1 157 7.8e-10 31.5 0.0 2 2 0.00018 0.015 7.9 0.1 110 152 227 268 223 272 0.84 # 30977 # 32143 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 260 NTPase_1 PF03266.10 168 0.00012 14.4 0.2 1 2 0.0016 0.13 4.5 0.1 2 30 105 133 104 153 0.83 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 NTPase_1 PF03266.10 168 0.00012 14.4 0.2 2 2 0.00016 0.013 7.8 0.0 88 112 157 181 144 203 0.73 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 608 DnaB_C PF03796.10 259 0.00069 11.1 5.2 1 3 0.043 3.4 -1.0 0.8 109 237 76 121 34 141 0.53 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 DnaB_C PF03796.10 259 0.00069 11.1 5.2 2 3 3.2e-05 0.0026 9.2 0.0 12 43 208 239 203 249 0.84 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_9 - 608 DnaB_C PF03796.10 259 0.00069 11.1 5.2 3 3 0.0029 0.24 2.8 0.0 88 148 307 368 291 379 0.76 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_43 - 363 AAA_30 PF13604.1 196 0.0007 11.8 0.0 1 1 1.7e-05 0.0014 10.8 0.0 15 55 18 59 9 91 0.77 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 FtsK_SpoIIIE PF01580.13 205 0.00059 11.9 0.0 1 1 2.2e-05 0.00089 11.4 0.0 41 59 171 189 158 224 0.87 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 FtsK_SpoIIIE PF01580.13 205 0.0007 11.7 0.0 1 1 3.9e-05 0.0016 10.6 0.0 15 56 505 553 495 563 0.68 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_43 - 363 DUF2813 PF11398.3 373 7.4e-08 24.4 0.3 1 2 6.9e-08 5.6e-06 18.2 0.0 5 50 4 49 1 56 0.88 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_43 - 363 DUF2813 PF11398.3 373 7.4e-08 24.4 0.3 2 2 0.0012 0.098 4.2 0.1 288 310 295 317 287 342 0.75 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_43 - 363 ABC_tran PF00005.22 137 6.2e-07 22.4 0.0 1 1 6e-07 1.2e-05 18.2 0.0 6 42 16 52 13 302 0.77 # 37590 # 38678 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 ABC_tran PF00005.22 137 1.3e-06 21.3 0.0 1 1 1.3e-07 2.6e-06 20.4 0.0 7 45 164 202 161 219 0.82 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 ABC_tran PF00005.22 137 4.2e-05 16.5 0.0 1 1 5.1e-06 0.0001 15.2 0.0 13 37 537 561 528 569 0.86 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 2_6 - 260 ABC_tran PF00005.22 137 9.7e-05 15.3 0.3 1 1 5.3e-05 0.0011 11.9 0.0 8 30 99 121 93 130 0.86 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 RuvB_N PF05496.7 234 0.0002 13.0 0.0 1 1 5.4e-06 0.00044 11.9 0.0 50 119 102 182 89 190 0.68 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA_19 PF13245.1 76 0.00033 13.0 0.0 1 1 1e-05 0.00081 11.8 0.0 10 37 103 129 96 154 0.79 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 917 AAA_10 PF12846.2 304 2.5e-42 137.9 0.1 1 1 5e-43 1e-41 135.9 0.0 2 298 536 830 535 836 0.91 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_26 - 636 AAA_10 PF12846.2 304 1.8e-10 33.3 0.0 1 1 2.6e-09 5.3e-08 25.2 0.0 4 299 192 481 189 483 0.71 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 2_6 - 260 AAA_10 PF12846.2 304 4.8e-06 18.8 0.6 1 2 5e-06 0.0001 14.4 0.0 1 33 102 134 102 141 0.92 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA_10 PF12846.2 304 4.8e-06 18.8 0.6 2 2 0.07 1.4 0.8 0.0 213 247 153 192 135 202 0.67 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_18 - 350 AAA_10 PF12846.2 304 4.4e-05 15.6 0.0 1 1 3.4e-06 7e-05 14.9 0.0 4 23 171 190 168 212 0.89 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_6 - 260 ResIII PF04851.10 184 0.00032 13.1 0.0 1 2 4.2e-05 0.0034 9.8 0.0 7 51 88 128 72 140 0.77 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 ResIII PF04851.10 184 0.00032 13.1 0.0 2 2 0.017 1.4 1.3 0.0 113 163 132 181 128 204 0.67 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_18 - 350 DEAD PF00270.24 169 0.00098 11.2 0.0 1 1 2.1e-05 0.0017 10.5 0.0 14 33 168 187 156 241 0.83 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_26 - 636 TrwB_AAD_bind PF10412.4 386 3.8e-10 31.5 0.0 1 2 5.3e-06 0.00014 13.1 0.0 11 53 185 227 180 240 0.88 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_26 - 636 TrwB_AAD_bind PF10412.4 386 3.8e-10 31.5 0.0 2 2 5.8e-07 1.6e-05 16.3 0.0 263 373 418 533 322 541 0.81 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 350 TrwB_AAD_bind PF10412.4 386 0.00053 11.2 0.0 1 1 2.6e-05 0.00069 10.8 0.0 17 43 170 196 153 224 0.79 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 TrwB_AAD_bind PF10412.4 386 0.00055 11.2 0.0 1 1 8.3e-05 0.0022 9.2 0.0 15 37 535 557 525 585 0.75 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_26 - 636 T4SS-DNA_transf PF02534.9 469 6.1e-08 24.2 0.0 1 2 1.5e-05 0.0012 10.0 0.0 44 84 181 231 129 272 0.76 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_26 - 636 T4SS-DNA_transf PF02534.9 469 6.1e-08 24.2 0.0 2 2 4e-06 0.00032 11.9 0.0 252 400 350 498 336 512 0.75 # 19761 # 21668 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 3_3 - 331 AAA_32 PF13654.1 509 7.7e-05 14.0 0.0 1 2 8.6e-06 0.00069 10.9 0.0 8 81 34 112 26 124 0.86 # 649 # 1641 # 1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 3_3 - 331 AAA_32 PF13654.1 509 7.7e-05 14.0 0.0 2 2 0.01 0.81 0.8 0.0 472 504 255 287 242 290 0.90 # 649 # 1641 # 1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 1_18 - 350 Pox_A32 PF04665.7 241 4.7e-06 18.6 0.1 1 1 8.5e-08 6.9e-06 18.1 0.1 16 61 171 221 161 236 0.81 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 350 RNA_helicase PF00910.17 107 0.00024 13.9 0.0 1 1 4.9e-06 0.0004 13.2 0.0 2 36 172 211 171 233 0.78 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_9 - 608 UPF0079 PF02367.12 123 2.9e-07 22.8 0.0 1 1 9.1e-09 7.4e-07 21.5 0.0 7 44 207 244 202 256 0.83 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_6 - 260 AAA_24 PF13479.1 213 0.00079 11.6 0.0 1 2 3.5e-05 0.0028 9.8 0.0 3 21 102 120 100 127 0.84 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA_24 PF13479.1 213 0.00079 11.6 0.0 2 2 0.09 7.3 -1.3 0.0 12 30 151 171 132 175 0.88 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 608 NACHT PF05729.7 166 1.3e-05 17.5 1.2 1 1 2.1e-06 8.5e-05 14.9 0.1 2 24 217 239 216 242 0.91 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_18 - 350 NACHT PF05729.7 166 6.2e-05 15.3 0.0 1 1 3.8e-06 0.00015 14.0 0.0 2 22 170 190 169 195 0.89 # 13977 # 15026 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_9 - 608 AAA_25 PF13481.1 194 8.6e-06 17.9 0.0 1 1 9.7e-07 3.9e-05 15.7 0.0 21 57 200 239 183 264 0.81 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_6 - 260 AAA_25 PF13481.1 194 3.2e-05 16.0 0.0 1 1 1.3e-06 5.1e-05 15.3 0.0 28 58 97 127 71 173 0.81 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA_28 PF13521.1 163 0.0014 11.2 1.4 1 2 0.071 5.8 -0.6 0.1 85 110 36 63 5 83 0.69 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 260 AAA_28 PF13521.1 163 0.0014 11.2 1.4 2 2 5e-05 0.0041 9.7 0.1 1 27 104 134 104 169 0.71 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 608 AAA_5 PF07728.9 139 1.2e-10 33.9 0.0 1 1 4.9e-11 1.3e-09 30.5 0.0 2 95 218 318 217 433 0.73 # 5750 # 7573 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 2_6 - 260 AAA_5 PF07728.9 139 3e-05 16.4 0.2 1 1 1.2e-05 0.00032 13.1 0.1 1 74 104 173 104 181 0.73 # 2766 # 3545 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 917 AAA_5 PF07728.9 139 0.0003 13.1 0.0 1 1 2.6e-05 0.00071 11.9 0.0 2 25 538 561 537 579 0.84 # 6192 # 8942 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e2893813-7aa8-42a4-8824-55976ca3057a # Target file: checkm_output/bins/pm1907/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1907/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e2893813-7aa8-42a4-8824-55976ca3057a checkm_output/bins/pm1907/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:42 2020 # [ok]