# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 229 UPF0020 PF01170.13 180 1.1e-05 18.3 0.0 1 2 0.00026 0.033 7.0 0.0 103 123 17 37 4 88 0.71 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_6 - 229 UPF0020 PF01170.13 180 1.1e-05 18.3 0.0 2 2 4.6e-05 0.0059 9.4 0.0 28 54 163 189 158 227 0.62 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 3_15 - 98 cobW PF02492.14 178 0.00045 12.9 0.0 1 1 4.6e-06 0.00059 12.6 0.0 2 22 2 22 1 30 0.81 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_22 - 503 Rad17 PF03215.10 519 0.0015 10.4 0.0 1 1 1.8e-05 0.0024 9.8 0.0 42 69 226 253 217 264 0.81 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 309 MipZ PF09140.6 261 6.4e-21 67.8 0.2 1 2 2.3e-12 2.9e-10 32.9 0.0 2 53 2 52 1 60 0.89 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_1 - 309 MipZ PF09140.6 261 6.4e-21 67.8 0.2 2 2 3.1e-12 4e-10 32.4 0.0 87 140 65 118 58 128 0.92 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_1 - 309 YhjQ PF06564.7 244 8.5e-05 15.2 0.0 1 2 2.9e-06 0.00037 13.1 0.1 4 38 3 37 1 49 0.89 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_1 - 309 YhjQ PF06564.7 244 8.5e-05 15.2 0.0 2 2 0.068 8.7 -1.2 0.0 109 144 70 103 55 111 0.77 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_13 - 176 SSB PF00436.20 104 8.3e-41 131.4 0.4 1 1 8.6e-43 1.1e-40 131.0 0.4 1 101 6 109 6 112 0.96 # 9451 # 9978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_65 - 768 DUF87 PF01935.12 229 0.0004 13.5 0.1 1 2 5e-05 0.0032 10.5 0.0 16 40 130 153 120 168 0.80 # 57148 # 59451 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_65 - 768 DUF87 PF01935.12 229 0.0004 13.5 0.1 2 2 0.082 5.2 0.0 0.1 111 173 640 701 622 729 0.63 # 57148 # 59451 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_34 - 383 DUF87 PF01935.12 229 0.00071 12.7 0.0 1 1 2.1e-05 0.0013 11.8 0.0 28 46 162 180 161 192 0.87 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_34 - 383 NB-ARC PF00931.17 287 0.00038 12.6 0.0 1 2 9.7e-06 0.0012 10.9 0.0 18 49 156 185 145 192 0.81 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_34 - 383 NB-ARC PF00931.17 287 0.00038 12.6 0.0 2 2 0.069 8.9 -1.7 0.0 208 236 331 357 326 367 0.70 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_34 - 383 AAA_22 PF13401.1 131 4.8e-06 20.0 0.0 1 1 2.3e-07 9.7e-06 19.0 0.0 3 48 156 198 153 233 0.77 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_22 - 503 AAA_22 PF13401.1 131 6.7e-06 19.5 0.0 1 1 3e-07 1.3e-05 18.6 0.0 4 49 229 281 225 330 0.84 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_15 - 98 AAA_22 PF13401.1 131 2e-05 18.0 0.0 1 1 4.8e-07 2e-05 18.0 0.0 6 49 2 49 1 82 0.74 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 2_1 - 309 SRP54 PF00448.17 196 6.3e-07 22.2 0.6 1 1 3.7e-08 4.7e-06 19.4 0.1 4 98 2 91 1 134 0.80 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 5_3 - 298 NAD_binding_7 PF13241.1 103 0.00083 12.9 0.0 1 1 1.1e-05 0.0014 12.2 0.0 5 41 80 123 78 194 0.67 # 1825 # 2718 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 2_6 - 229 N6_N4_Mtase PF01555.13 231 1.8e-36 119.0 0.0 1 2 2.8e-15 3.6e-13 42.8 0.0 1 113 21 123 21 132 0.89 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_6 - 229 N6_N4_Mtase PF01555.13 231 1.8e-36 119.0 0.0 2 2 5.9e-25 7.6e-23 74.4 0.0 169 228 141 200 128 203 0.91 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 3_15 - 98 AAA_17 PF13207.1 121 5.2e-06 20.6 0.0 1 1 1.8e-07 5.6e-06 20.5 0.0 1 22 2 23 2 94 0.68 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 2_1 - 309 AAA_17 PF13207.1 121 6.1e-05 17.1 0.0 1 1 4.4e-06 0.00014 15.9 0.0 9 77 11 84 9 212 0.77 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_22 - 503 AAA_17 PF13207.1 121 6.2e-05 17.1 0.0 1 1 5.5e-06 0.00017 15.6 0.0 1 32 231 264 231 361 0.79 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_34 - 383 AAA_17 PF13207.1 121 0.00049 14.2 0.0 1 1 3.6e-05 0.0012 13.0 0.0 3 22 161 180 161 245 0.81 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 2_1 - 309 MobB PF03205.9 140 0.00012 15.0 0.0 1 1 5.8e-06 0.00037 13.5 0.0 10 41 11 40 1 46 0.79 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 3_15 - 98 MobB PF03205.9 140 0.0016 11.4 0.0 1 1 3.9e-05 0.0025 10.8 0.0 1 20 1 20 1 25 0.92 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 2_1 - 309 ArsA_ATPase PF02374.10 305 8.8e-08 24.7 0.4 1 2 2.2e-09 2.8e-07 23.1 0.1 3 48 3 48 1 69 0.85 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_1 - 309 ArsA_ATPase PF02374.10 305 8.8e-08 24.7 0.4 2 2 0.09 12 -1.9 0.0 121 135 69 85 47 86 0.75 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_22 - 503 T2SE PF00437.15 272 3.5e-38 124.2 0.0 1 1 8.5e-40 5.4e-38 123.6 0.0 66 269 161 378 143 381 0.87 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_34 - 383 T2SE PF00437.15 272 5e-35 113.9 0.0 1 1 1.1e-36 7e-35 113.4 0.0 111 263 144 298 23 309 0.79 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 3_15 - 98 Zeta_toxin PF06414.7 201 0.00025 13.4 0.0 1 1 5e-06 0.00032 13.1 0.0 19 53 3 35 1 97 0.73 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_22 - 503 Zeta_toxin PF06414.7 201 0.0011 11.3 0.0 1 1 2.9e-05 0.0018 10.6 0.0 18 39 231 252 216 259 0.79 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 309 VirC1 PF07015.6 231 3e-08 26.2 0.0 1 1 4.7e-10 6.1e-08 25.2 0.0 3 129 2 122 1 179 0.72 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_1 - 309 Fer4_NifH PF00142.13 273 0.00021 13.8 0.0 1 1 4.1e-06 0.00052 12.5 0.0 8 38 9 39 2 46 0.89 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_22 - 503 AAA_16 PF13191.1 185 4.2e-05 16.8 0.0 1 1 1.7e-06 7.1e-05 16.1 0.0 13 52 222 263 216 369 0.84 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_34 - 383 AAA_16 PF13191.1 185 5.4e-05 16.5 0.1 1 1 4.3e-06 0.00018 14.8 0.0 25 61 158 191 148 284 0.84 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 3_15 - 98 AAA_16 PF13191.1 185 0.001 12.3 0.0 1 1 2.4e-05 0.001 12.3 0.0 27 51 3 27 1 77 0.81 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_34 - 383 AAA_23 PF13476.1 202 2.3e-05 18.0 0.0 1 1 6.7e-07 4.3e-05 17.1 0.0 20 46 158 185 144 218 0.81 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_22 - 503 AAA_23 PF13476.1 202 9.6e-05 16.0 0.0 1 1 2.9e-06 0.00018 15.1 0.0 20 37 230 247 225 262 0.90 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_15 - 98 AAA_18 PF13238.1 129 2.5e-07 24.3 0.0 1 1 6.3e-09 2.7e-07 24.2 0.0 1 33 3 46 3 91 0.72 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_34 - 383 AAA_18 PF13238.1 129 0.00014 15.5 0.0 1 1 5.8e-06 0.00025 14.6 0.0 2 38 161 193 161 238 0.71 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_22 - 503 AAA_18 PF13238.1 129 0.0015 12.2 0.1 1 1 7.9e-05 0.0034 11.0 0.1 1 18 232 249 232 267 0.87 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 309 CbiA PF01656.18 195 3.7e-22 71.9 0.0 1 1 6.4e-24 8.2e-22 70.8 0.0 1 161 3 144 3 179 0.73 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 3_15 - 98 AAA_14 PF13173.1 128 0.0008 12.6 0.0 1 1 1.6e-05 0.001 12.2 0.0 4 25 2 23 1 52 0.79 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_22 - 503 AAA_14 PF13173.1 128 0.0014 11.8 0.0 1 1 4.4e-05 0.0028 10.8 0.0 3 30 230 255 228 267 0.86 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_22 - 503 AAA_29 PF13555.1 62 2e-05 17.3 0.0 1 1 7.9e-07 5e-05 16.1 0.0 20 40 227 246 219 255 0.84 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_34 - 383 AAA_29 PF13555.1 62 2.8e-05 16.9 0.0 1 1 1.1e-06 6.9e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_34 - 383 Sigma54_activat PF00158.21 168 0.00084 12.1 0.0 1 1 1.3e-05 0.0016 11.2 0.0 26 47 161 182 145 193 0.84 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_65 - 768 TraG-D_C PF12696.2 128 3.1e-08 26.8 0.7 1 1 5e-10 6.3e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 57148 # 59451 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_1 - 309 AAA_31 PF13614.1 157 1.2e-05 18.6 0.0 1 1 4.7e-07 6e-05 16.3 0.0 2 42 2 42 1 55 0.88 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 3_15 - 98 AAA_33 PF13671.1 143 1e-05 18.7 0.0 1 1 1.6e-07 1e-05 18.7 0.0 2 86 3 89 2 97 0.55 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_22 - 503 AAA_33 PF13671.1 143 0.00077 12.6 0.0 1 1 3.2e-05 0.0021 11.2 0.0 1 19 231 249 231 333 0.71 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 229 Methyltransf_26 PF13659.1 117 8.9e-12 38.4 0.0 1 2 1.5e-07 2e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_6 - 229 Methyltransf_26 PF13659.1 117 8.9e-12 38.4 0.0 2 2 9.7e-08 1.2e-05 18.6 0.0 4 45 167 207 164 227 0.82 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 5_3 - 298 2-Hacid_dh_C PF02826.14 178 6.8e-05 15.3 0.1 1 1 9.3e-07 0.00012 14.5 0.1 29 88 75 132 67 137 0.81 # 1825 # 2718 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_50 - 724 Bac_GDH PF05088.7 1528 0.0013 9.4 0.1 1 1 1.4e-05 0.0018 8.9 0.1 365 464 258 363 248 375 0.80 # 45072 # 47243 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_22 - 503 AAA_30 PF13604.1 196 8.5e-09 28.5 0.0 1 1 1.2e-10 1.6e-08 27.6 0.0 2 45 213 256 212 263 0.92 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_34 - 383 FtsK_SpoIIIE PF01580.13 205 0.00091 12.0 0.0 1 1 1.2e-05 0.0015 11.2 0.0 40 60 159 179 128 231 0.80 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_41 - 238 AAA_27 PF13514.1 1111 0.00056 10.9 3.0 1 1 5.6e-06 0.00072 10.5 3.0 316 391 97 171 94 182 0.90 # 36583 # 37296 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.594 5_3 - 298 ELFV_dehydrog PF00208.16 244 3.4e-88 288.6 1.3 1 1 3.1e-90 4e-88 288.3 1.3 1 244 52 295 52 295 0.96 # 1825 # 2718 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_34 - 383 ABC_tran PF00005.22 137 2.7e-05 17.8 0.0 1 1 8.1e-07 5.2e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_22 - 503 ABC_tran PF00005.22 137 0.00045 13.8 0.0 1 1 1.2e-05 0.00079 13.0 0.0 12 37 230 255 224 364 0.90 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_15 - 98 TIGR03263 TIGR03263 180 0.0011 11.5 0.0 1 1 1.2e-05 0.0016 11.1 0.0 3 27 2 26 1 30 0.84 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 2_6 - 229 Cons_hypoth95 PF03602.10 183 1.7e-05 17.5 0.0 1 2 0.00039 0.05 6.2 0.0 112 146 18 54 9 81 0.65 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_6 - 229 Cons_hypoth95 PF03602.10 183 1.7e-05 17.5 0.0 2 2 4.2e-05 0.0054 9.4 0.0 41 62 162 183 145 217 0.79 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_22 - 503 AAA_19 PF13245.1 76 1.4e-06 21.3 0.0 1 1 8.7e-08 3.7e-06 19.9 0.0 1 36 219 255 219 272 0.76 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_15 - 98 AAA_19 PF13245.1 76 0.00051 13.1 0.0 1 1 1.8e-05 0.00077 12.5 0.0 15 33 5 22 2 39 0.84 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 2_1 - 309 AAA_19 PF13245.1 76 0.0011 12.0 0.0 1 2 0.0005 0.021 7.9 0.0 20 48 11 35 9 44 0.84 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_1 - 309 AAA_19 PF13245.1 76 0.0011 12.0 0.0 2 2 0.07 3 1.0 0.0 42 62 135 155 119 174 0.76 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_46 - 1015 AAA_10 PF12846.2 304 2.4e-31 102.5 0.0 1 1 2.6e-32 6.6e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 39604 # 42648 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.581 1_34 - 383 AAA_10 PF12846.2 304 1.9e-05 17.5 0.2 1 2 1.8e-05 0.00047 12.9 0.1 3 22 159 178 157 185 0.85 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_34 - 383 AAA_10 PF12846.2 304 1.9e-05 17.5 0.2 2 2 0.016 0.41 3.2 0.0 181 247 259 347 174 350 0.58 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_65 - 768 AAA_10 PF12846.2 304 7.1e-05 15.6 1.9 1 1 2.2e-05 0.00057 12.6 1.9 144 292 325 506 136 516 0.61 # 57148 # 59451 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 2_1 - 309 AAA_10 PF12846.2 304 0.00012 14.9 0.1 1 1 2.3e-05 0.0006 12.5 0.0 11 39 11 39 3 65 0.90 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_22 - 503 AAA_10 PF12846.2 304 0.00071 12.3 0.0 1 1 4.2e-05 0.0011 11.7 0.0 4 28 232 256 229 362 0.77 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_15 - 98 PduV-EutP PF10662.4 143 0.0011 11.7 0.0 1 1 8.7e-06 0.0011 11.7 0.0 5 24 4 23 1 93 0.77 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_22 - 503 DEAD PF00270.24 169 0.0014 11.4 0.0 1 1 1.6e-05 0.002 10.8 0.0 3 39 216 254 214 340 0.82 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_26 - 283 Methyltransf_27 PF13708.1 194 3.3e-67 219.0 0.0 1 1 3.6e-69 4.6e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 19163 # 20011 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_65 - 768 TrwB_AAD_bind PF10412.4 386 7.8e-07 21.2 0.2 1 2 0.00021 0.026 6.3 0.0 11 32 132 153 126 164 0.80 # 57148 # 59451 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_65 - 768 TrwB_AAD_bind PF10412.4 386 7.8e-07 21.2 0.2 2 2 2.5e-06 0.00032 12.6 0.1 260 332 452 525 435 578 0.75 # 57148 # 59451 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_22 - 503 AAA_11 PF13086.1 236 0.00066 12.5 0.0 1 1 6.7e-06 0.00086 12.1 0.0 2 41 213 253 212 353 0.86 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 229 MethyltransfD12 PF02086.10 260 0.00056 12.6 0.0 1 2 0.016 2 1.0 0.0 175 188 18 31 8 91 0.82 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_6 - 229 MethyltransfD12 PF02086.10 260 0.00056 12.6 0.0 2 2 4e-05 0.0052 9.5 0.0 20 46 163 189 148 197 0.78 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_34 - 383 RNA_helicase PF00910.17 107 6.9e-05 16.3 0.0 1 1 2.1e-06 0.00013 15.4 0.0 2 33 161 190 160 201 0.82 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 3_15 - 98 RNA_helicase PF00910.17 107 0.001 12.5 0.0 1 1 2.3e-05 0.0015 12.0 0.0 1 21 3 23 3 43 0.85 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 3_15 - 98 UPF0079 PF02367.12 123 0.00053 12.9 0.0 1 1 7.4e-06 0.00095 12.1 0.0 17 35 2 20 1 26 0.88 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 5_3 - 298 AlaDh_PNT_C PF01262.16 168 8.2e-05 15.5 0.8 1 1 1.3e-06 0.00017 14.4 0.1 21 63 83 126 71 160 0.63 # 1825 # 2718 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 3_15 - 98 AAA_24 PF13479.1 213 5e-05 16.2 0.0 1 1 3.9e-07 5e-05 16.2 0.0 6 33 3 34 1 75 0.83 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_10 - 214 TIGR00922 TIGR00922 172 0.00028 13.7 0.0 1 1 2.6e-06 0.00033 13.5 0.0 54 104 105 155 56 176 0.87 # 6862 # 7503 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_15 - 98 NACHT PF05729.7 166 7.4e-05 15.7 0.0 1 1 1.5e-06 9.9e-05 15.3 0.0 2 21 2 21 1 31 0.90 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 1_34 - 383 NACHT PF05729.7 166 0.00083 12.3 0.0 1 1 2.8e-05 0.0018 11.2 0.0 4 30 161 187 159 193 0.82 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_34 - 383 AAA_25 PF13481.1 194 1.1e-05 18.2 0.0 1 1 4.2e-07 1.8e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 27647 # 28795 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_22 - 503 AAA_25 PF13481.1 194 0.00018 14.2 0.0 1 1 1.1e-05 0.00046 12.8 0.0 19 64 214 260 202 276 0.79 # 16967 # 18475 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 309 AAA_25 PF13481.1 194 0.0002 14.0 0.0 1 1 1.8e-05 0.00079 12.1 0.0 42 86 10 43 3 88 0.78 # 230 # 1156 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 2_6 - 229 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 1 2 0.042 5.4 -0.2 0.0 53 79 4 29 2 33 0.90 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_6 - 229 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 2 2 4.4e-05 0.0056 9.5 0.0 3 31 166 194 164 208 0.86 # 5014 # 5700 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 3_15 - 98 AAA_28 PF13521.1 163 0.00014 15.1 0.0 1 1 1.1e-06 0.00014 15.1 0.0 2 30 3 34 2 75 0.79 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 3_15 - 98 APS_kinase PF01583.15 157 0.00034 13.6 0.0 1 1 3.6e-06 0.00047 13.1 0.0 4 24 2 22 1 33 0.89 # 9318 # 9611 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3ff9ca77-51bd-48bb-8357-1165a4f0100e # Target file: checkm_output/bins/pm1906/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1906/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3ff9ca77-51bd-48bb-8357-1165a4f0100e checkm_output/bins/pm1906/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:41 2020 # [ok]