# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 343 Mg_chelatase PF01078.16 207 5.1e-06 17.4 0.0 1 2 1.3e-06 5.7e-05 14.0 0.0 10 56 155 201 147 252 0.82 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 Mg_chelatase PF01078.16 207 5.1e-06 17.4 0.0 2 2 0.027 1.2 -0.1 0.0 166 200 287 321 279 325 0.81 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 222 MipZ PF09140.6 261 1.8e-11 35.2 0.9 1 1 3.4e-11 1.4e-09 29.0 0.9 2 130 4 111 3 134 0.81 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 DUF87 PF01935.12 229 8.3e-05 14.1 0.0 1 1 3.7e-06 0.00016 13.2 0.0 30 131 174 289 166 331 0.69 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_29 - 916 AAA_22 PF13401.1 131 4.1e-05 15.4 0.1 1 2 4.3e-05 0.0018 10.1 0.1 8 37 538 575 535 729 0.80 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_29 - 916 AAA_22 PF13401.1 131 4.1e-05 15.4 0.1 2 2 0.018 0.78 1.6 0.0 75 109 740 778 737 794 0.72 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_21 - 343 ATP_bind_1 PF03029.12 238 2.2e-05 15.7 0.0 1 1 1.8e-06 3.7e-05 15.0 0.0 2 25 173 196 172 205 0.87 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 222 ATP_bind_1 PF03029.12 238 5.5e-05 14.4 0.1 1 2 9e-05 0.0019 9.4 0.1 6 41 13 48 9 58 0.88 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_6 - 222 ATP_bind_1 PF03029.12 238 5.5e-05 14.4 0.1 2 2 0.0084 0.18 3.0 0.0 82 101 69 90 61 120 0.64 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_1 - 288 Ribosomal_S10 PF00338.17 97 0.00034 12.2 0.7 1 1 3.6e-05 0.0015 10.1 0.0 7 46 220 261 217 271 0.90 # 3 # 866 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 1_6 - 222 SRP54 PF00448.17 196 8.5e-05 13.7 0.1 1 1 4.5e-06 0.00019 12.6 0.1 10 94 12 90 3 113 0.70 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 AAA_17 PF13207.1 121 0.00013 14.5 0.0 1 1 8.1e-06 0.00034 13.1 0.0 2 22 170 190 169 261 0.83 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 222 MobB PF03205.9 140 4e-07 21.5 0.9 1 2 1.6e-06 3.4e-05 15.3 0.4 2 38 4 41 3 51 0.86 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_6 - 222 MobB PF03205.9 140 4e-07 21.5 0.9 2 2 0.0035 0.073 4.5 0.0 44 75 85 119 77 134 0.79 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 MobB PF03205.9 140 5e-05 14.7 0.1 1 1 1.2e-05 0.00025 12.5 0.0 3 25 170 192 168 208 0.80 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 222 ArsA_ATPase PF02374.10 305 1e-08 26.2 0.2 1 1 4e-10 1.7e-08 25.5 0.2 4 38 6 40 3 57 0.92 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 T2SE PF00437.15 272 1.7e-61 199.1 0.0 1 1 4.7e-63 2e-61 198.9 0.0 4 270 21 322 18 324 0.95 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 Zeta_toxin PF06414.7 201 0.00014 12.7 0.0 1 1 5.1e-06 0.00022 12.1 0.0 18 60 169 214 162 244 0.83 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 222 VirC1 PF07015.6 231 6.3e-09 26.9 0.0 1 1 3.1e-10 1.3e-08 25.8 0.0 3 55 4 56 2 66 0.92 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_6 - 222 Fer4_NifH PF00142.13 273 3.8e-07 21.2 0.1 1 1 1.9e-08 8.1e-07 20.1 0.1 6 41 9 44 5 54 0.90 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 AAA_16 PF13191.1 185 0.00037 12.2 0.0 1 1 1.3e-05 0.00056 11.6 0.0 23 51 166 194 154 315 0.84 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_29 - 916 AAA_23 PF13476.1 202 1.2e-05 17.3 0.0 1 2 0.0013 0.056 5.4 0.0 97 198 230 438 165 442 0.47 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_29 - 916 AAA_23 PF13476.1 202 1.2e-05 17.3 0.0 2 2 9.5e-05 0.004 9.1 0.1 24 50 539 567 529 644 0.84 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_6 - 222 CbiA PF01656.18 195 1.4e-17 55.4 0.6 1 1 7.9e-19 3.3e-17 54.2 0.6 2 174 6 162 5 180 0.78 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 AAA_14 PF13173.1 128 0.00019 13.1 0.0 1 1 1.2e-05 0.0005 11.7 0.0 3 44 168 207 166 260 0.80 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_42 - 172 B5 PF03484.10 70 0.00012 13.6 0.0 1 1 1.5e-05 0.00062 11.3 0.0 16 43 93 128 1 154 0.87 # 33445 # 33960 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_21 - 343 AAA_29 PF13555.1 62 3.3e-05 15.1 0.0 1 1 1.7e-06 7.1e-05 14.0 0.0 18 40 163 184 147 189 0.75 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_29 - 916 AAA PF00004.24 132 0.00019 13.3 0.1 1 2 0.0016 0.069 5.1 0.0 4 23 540 559 538 594 0.77 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_29 - 916 AAA PF00004.24 132 0.00019 13.3 0.1 2 2 0.0019 0.078 4.9 0.0 59 126 752 807 738 812 0.82 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_20 - 621 TraG-D_C PF12696.2 128 3.3e-25 80.1 0.0 1 1 1.3e-26 5.6e-25 79.4 0.0 2 127 422 541 421 542 0.91 # 17408 # 19270 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.422 1_6 - 222 AAA_31 PF13614.1 157 1.7e-07 23.0 0.0 1 2 1.9e-07 7.8e-06 17.6 0.0 1 44 3 46 3 60 0.86 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_6 - 222 AAA_31 PF13614.1 157 1.7e-07 23.0 0.0 2 2 0.0045 0.19 3.3 0.0 111 151 73 112 63 115 0.88 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 FtsK_SpoIIIE PF01580.13 205 7.6e-09 27.0 0.0 1 2 1.3e-09 5.3e-08 24.2 0.0 10 59 139 188 130 194 0.87 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 FtsK_SpoIIIE PF01580.13 205 7.6e-09 27.0 0.0 2 2 0.027 1.1 0.3 0.0 58 116 236 297 230 315 0.79 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 ABC_tran PF00005.22 137 4.6e-05 15.4 0.0 1 1 4.4e-06 9.1e-05 14.5 0.0 5 37 161 193 158 218 0.81 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_29 - 916 ABC_tran PF00005.22 137 0.00038 12.5 0.0 1 1 5.2e-05 0.0011 11.0 0.0 14 42 537 565 531 585 0.80 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_29 - 916 AAA_10 PF12846.2 304 6.8e-32 102.7 0.0 1 1 5.7e-33 1.2e-31 101.9 0.0 3 295 536 826 534 835 0.88 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_21 - 343 AAA_10 PF12846.2 304 0.00011 13.4 0.0 1 1 1e-05 0.00022 12.4 0.0 2 23 168 189 167 206 0.85 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 ResIII PF04851.10 184 2.1e-05 16.1 0.0 1 1 8e-07 3.4e-05 15.4 0.0 12 51 156 193 138 225 0.73 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 DEAD PF00270.24 169 0.00039 11.6 0.1 1 1 2.5e-05 0.0011 10.2 0.0 14 32 167 185 154 255 0.73 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_20 - 621 TrwB_AAD_bind PF10412.4 386 2.9e-17 53.9 0.0 1 1 2.2e-18 4.5e-17 53.3 0.0 164 380 336 555 291 557 0.81 # 17408 # 19270 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.422 1_21 - 343 TrwB_AAD_bind PF10412.4 386 1.7e-05 15.2 0.0 1 1 1.3e-06 2.6e-05 14.6 0.0 16 40 168 192 159 209 0.86 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_20 - 621 T4SS-DNA_transf PF02534.9 469 6.6e-97 316.6 0.0 1 1 2.1e-98 8.9e-97 316.1 0.0 45 459 147 575 98 589 0.86 # 17408 # 19270 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.422 1_21 - 343 Pox_A32 PF04665.7 241 1.3e-05 16.2 0.0 1 1 5e-07 2.1e-05 15.6 0.0 15 44 169 198 159 245 0.74 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 222 GTP_EFTU PF00009.22 188 2e-06 19.0 0.1 1 1 6.5e-08 2.7e-06 18.6 0.1 15 115 15 123 6 210 0.65 # 2741 # 3406 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_21 - 343 RNA_helicase PF00910.17 107 0.00022 13.1 0.0 1 1 1.2e-05 0.00051 11.9 0.0 1 23 170 192 170 223 0.83 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_21 - 343 UPF0079 PF02367.12 123 0.00034 12.0 0.0 1 1 1.4e-05 0.00059 11.2 0.0 12 38 164 190 154 201 0.84 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_29 - 916 NACHT PF05729.7 166 9.2e-05 13.8 0.0 1 1 2.3e-05 0.00049 11.5 0.0 5 28 539 562 537 572 0.85 # 25132 # 27879 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_21 - 343 NACHT PF05729.7 166 0.0004 11.7 0.0 1 1 4.7e-05 0.00098 10.5 0.0 3 22 170 189 168 199 0.89 # 19257 # 20285 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ed7bf7cb-f58f-4759-883e-a47b89d8a0fd # Target file: checkm_output/bins/pm1904/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1904/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ed7bf7cb-f58f-4759-883e-a47b89d8a0fd checkm_output/bins/pm1904/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:39 2020 # [ok]