# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_72 - 234 UPF0020 PF01170.13 180 6.6e-06 18.8 0.0 1 2 0.00018 0.01 8.4 0.0 103 117 17 31 5 75 0.84 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_72 - 234 UPF0020 PF01170.13 180 6.6e-06 18.8 0.0 2 2 0.00018 0.01 8.4 0.0 28 52 170 194 165 227 0.75 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_59 - 188 UPF0020 PF01170.13 180 1.4e-05 17.8 0.0 1 1 1.5e-06 7.9e-05 15.3 0.0 19 54 41 78 39 138 0.74 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_59 - 188 RrnaAD PF00398.15 262 2.7e-07 22.8 0.0 1 1 3.4e-09 3.6e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_83 - 389 MipZ PF09140.6 261 4.6e-06 18.8 0.3 1 2 3.5e-06 0.00038 12.6 0.0 2 47 108 153 107 157 0.87 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_83 - 389 MipZ PF09140.6 261 4.6e-06 18.8 0.3 2 2 0.0011 0.12 4.3 0.0 88 134 224 270 197 292 0.85 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_58 - 181 SSB PF00436.20 104 2.7e-41 132.7 0.4 1 1 3.1e-43 3.4e-41 132.4 0.4 1 99 6 105 6 113 0.95 # 48470 # 49012 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.624 1_59 - 188 Methyltransf_18 PF12847.2 112 1.1e-07 25.5 0.0 1 1 1.6e-09 1.7e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_3 - 1754 UvrD_C_2 PF13538.1 104 1.6e-07 24.5 0.3 1 1 9.2e-09 9.9e-07 21.9 0.1 3 102 1340 1443 1333 1445 0.75 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_23 - 880 DUF87 PF01935.12 229 2.6e-06 20.4 0.0 1 2 0.056 6 -0.4 0.2 113 171 312 362 304 396 0.60 # 23783 # 26422 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_23 - 880 DUF87 PF01935.12 229 2.6e-06 20.4 0.0 2 2 1.6e-07 1.7e-05 17.7 0.0 26 222 484 674 479 681 0.82 # 23783 # 26422 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_3 - 1754 AAA_22 PF13401.1 131 7.5e-05 15.9 0.0 1 2 0.0057 0.62 3.2 0.0 89 121 505 536 468 538 0.72 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_3 - 1754 AAA_22 PF13401.1 131 7.5e-05 15.9 0.0 2 2 0.00011 0.012 8.8 0.0 3 29 986 1012 983 1065 0.79 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_72 - 234 N6_N4_Mtase PF01555.13 231 4e-33 107.8 0.0 1 2 2.5e-13 2.7e-11 36.4 0.0 1 113 21 130 21 138 0.85 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_72 - 234 N6_N4_Mtase PF01555.13 231 4e-33 107.8 0.0 2 2 1.6e-23 1.8e-21 69.7 0.0 169 227 148 206 132 210 0.92 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_83 - 389 ArsA_ATPase PF02374.10 305 1.9e-06 20.1 0.4 1 2 1.7e-06 0.00018 13.6 0.1 9 36 115 142 109 151 0.89 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_83 - 389 ArsA_ATPase PF02374.10 305 1.9e-06 20.1 0.4 2 2 0.0011 0.12 4.3 0.0 123 136 231 244 221 251 0.84 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_83 - 389 VirC1 PF07015.6 231 6.1e-05 15.2 0.0 1 2 0.00028 0.03 6.3 0.0 4 42 109 147 107 154 0.91 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_83 - 389 VirC1 PF07015.6 231 6.1e-05 15.2 0.0 2 2 0.00026 0.028 6.5 0.0 84 139 235 290 220 316 0.77 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_4 - 771 AAA_16 PF13191.1 185 3.1e-06 20.3 0.0 1 1 1.4e-07 1.5e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_83 - 389 CbiA PF01656.18 195 5.6e-37 120.0 0.0 1 1 6.9e-39 7.4e-37 119.6 0.0 2 194 110 339 109 340 0.80 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_59 - 188 N6_Mtase PF02384.11 311 0.0001 14.4 0.0 1 2 2.6e-05 0.0029 9.7 0.0 28 71 32 75 21 93 0.82 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_59 - 188 N6_Mtase PF02384.11 311 0.0001 14.4 0.0 2 2 0.0056 0.61 2.0 0.0 124 138 111 125 95 133 0.81 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_4 - 771 TraG-D_C PF12696.2 128 7.5e-20 64.1 0.0 1 1 1.6e-21 1.7e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_83 - 389 AAA_31 PF13614.1 157 1e-09 31.5 0.0 1 2 1.4e-08 1.5e-06 21.2 0.0 2 49 108 155 107 195 0.92 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_83 - 389 AAA_31 PF13614.1 157 1e-09 31.5 0.0 2 2 0.00018 0.019 7.9 0.1 110 152 227 268 223 272 0.84 # 66857 # 68023 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_59 - 188 Methyltransf_26 PF13659.1 117 2e-13 43.5 0.1 1 1 5.9e-15 3.2e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_72 - 234 Methyltransf_26 PF13659.1 117 1.8e-11 37.1 0.2 1 2 3.7e-07 2e-05 17.6 0.0 63 113 13 70 3 86 0.73 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_72 - 234 Methyltransf_26 PF13659.1 117 1.8e-11 37.1 0.2 2 2 4.2e-07 2.3e-05 17.5 0.1 4 44 174 213 171 227 0.81 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_3 - 1754 AAA_30 PF13604.1 196 2.3e-45 147.5 7.6 1 2 4.7e-07 5e-05 15.9 1.0 9 126 424 536 422 561 0.86 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_3 - 1754 AAA_30 PF13604.1 196 2.3e-45 147.5 7.6 2 2 4.9e-43 5.3e-41 133.3 0.8 2 186 971 1158 970 1162 0.94 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_23 - 880 FtsK_SpoIIIE PF01580.13 205 0.00012 14.6 0.0 1 1 2.7e-06 0.00029 13.3 0.0 39 63 480 506 466 508 0.85 # 23783 # 26422 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_59 - 188 MTS PF05175.9 170 1.2e-09 30.8 0.0 1 1 1.5e-11 1.6e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_72 - 234 Cons_hypoth95 PF03602.10 183 3.2e-06 19.7 0.0 1 2 9.7e-05 0.011 8.2 0.0 113 170 19 78 12 86 0.73 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_72 - 234 Cons_hypoth95 PF03602.10 183 3.2e-06 19.7 0.0 2 2 3.8e-05 0.0041 9.5 0.0 23 60 152 188 143 226 0.72 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_3 - 1754 AAA_19 PF13245.1 76 4.4e-07 22.7 0.8 1 1 4e-09 4.4e-07 22.7 0.8 8 74 984 1047 976 1050 0.71 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_59 - 188 Methyltransf_2 PF00891.13 242 0.0013 11.0 0.0 1 1 1.7e-05 0.0019 10.4 0.0 111 159 60 110 40 119 0.83 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_23 - 880 AAA_10 PF12846.2 304 6.3e-46 150.1 0.0 1 1 1.9e-47 1e-45 149.5 0.0 1 294 481 773 481 779 0.85 # 23783 # 26422 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_4 - 771 AAA_10 PF12846.2 304 2.3e-09 30.0 0.0 1 2 1e-05 0.00055 12.4 0.0 3 43 187 227 186 260 0.92 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 771 AAA_10 PF12846.2 304 2.3e-09 30.0 0.0 2 2 1.1e-06 6.1e-05 15.5 0.0 201 296 398 494 282 499 0.85 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 771 TrwB_AAD_bind PF10412.4 386 7.1e-149 488.5 0.0 1 1 1.7e-150 9.1e-149 488.2 0.0 2 386 172 561 171 561 0.99 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 880 TrwB_AAD_bind PF10412.4 386 1.7e-05 16.6 0.2 1 1 8e-07 4.3e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 23783 # 26422 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_3 - 1754 AAA_11 PF13086.1 236 1.6e-05 17.5 2.7 1 2 3.8e-07 4.1e-05 16.2 0.0 2 72 971 1038 970 1065 0.83 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_3 - 1754 AAA_11 PF13086.1 236 1.6e-05 17.5 2.7 2 2 0.033 3.6 0.0 0.0 3 35 1182 1213 1180 1339 0.70 # 1553 # 6814 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_4 - 771 T4SS-DNA_transf PF02534.9 469 1e-08 27.1 0.0 1 2 0.035 3.8 -1.1 0.0 128 199 260 330 249 359 0.73 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 771 T4SS-DNA_transf PF02534.9 469 1e-08 27.1 0.0 2 2 3.4e-10 3.7e-08 25.3 0.0 275 393 393 507 363 559 0.74 # 6814 # 9126 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_59 - 188 TIGR00755 TIGR00755 256 6.9e-08 24.7 0.0 1 1 9e-10 9.7e-08 24.2 0.0 8 105 29 123 26 128 0.90 # 49813 # 50376 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_23 - 880 Pox_A32 PF04665.7 241 8.1e-05 15.0 0.0 1 1 1.5e-06 0.00017 14.0 0.0 6 40 474 508 470 523 0.82 # 23783 # 26422 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_72 - 234 Methyltransf_15 PF09445.5 164 0.00074 12.1 0.0 1 2 0.02 2.2 0.8 0.0 53 80 4 30 2 40 0.90 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_72 - 234 Methyltransf_15 PF09445.5 164 0.00074 12.1 0.0 2 2 6.9e-05 0.0074 8.8 0.0 3 30 173 200 171 214 0.90 # 57267 # 57968 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/58f9d52b-e1ac-4523-ba94-490626803339 # Target file: checkm_output/bins/pm1901/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1901/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/58f9d52b-e1ac-4523-ba94-490626803339 checkm_output/bins/pm1901/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:39 2020 # [ok]