# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_3 - 181 cobW PF02492.14 178 0.00031 11.9 0.0 1 1 1.3e-05 0.00052 11.1 0.0 2 21 2 21 1 29 0.81 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_22 PF13401.1 131 6.4e-06 18.0 0.0 1 1 4.7e-07 1.9e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_17 PF13207.1 121 9.7e-07 21.3 0.0 1 1 4.8e-08 2e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00041 11.9 0.0 1 2 9.1e-05 0.0037 8.8 0.0 1 22 2 23 2 44 0.81 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00041 11.9 0.0 2 2 0.026 1.1 0.8 0.0 110 135 96 122 94 136 0.74 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 Zeta_toxin PF06414.7 201 3.3e-05 14.7 0.0 1 2 2.1e-05 0.00086 10.1 0.0 19 50 3 32 1 39 0.78 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 Zeta_toxin PF06414.7 201 3.3e-05 14.7 0.0 2 2 0.0045 0.18 2.4 0.0 94 123 73 102 57 160 0.77 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_18 PF13238.1 129 8.1e-10 30.8 0.0 1 1 3.9e-11 1.6e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_33 PF13671.1 143 1.2e-10 33.0 0.0 1 1 4.3e-12 1.7e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_19 PF13245.1 76 0.00017 13.0 0.0 1 1 1.8e-05 0.00072 11.0 0.0 15 33 5 22 2 36 0.85 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_24 PF13479.1 213 4.1e-05 14.9 0.0 1 1 1.2e-06 5.1e-05 14.5 0.0 6 33 3 34 1 99 0.87 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 NACHT PF05729.7 166 3.4e-05 15.2 0.1 1 1 2.1e-06 8.6e-05 13.9 0.0 2 21 2 21 1 29 0.91 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 AAA_28 PF13521.1 163 6.4e-05 14.6 0.0 1 1 4.7e-06 0.00019 13.0 0.0 2 29 3 33 2 58 0.77 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 APS_kinase PF01583.15 157 5.4e-06 17.8 0.0 1 2 1e-05 0.00042 11.6 0.0 4 24 2 22 1 30 0.89 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 181 APS_kinase PF01583.15 157 5.4e-06 17.8 0.0 2 2 0.0021 0.086 4.1 0.1 34 72 107 147 91 157 0.86 # 1300 # 1842 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/413672cf-9c64-46b6-b5d3-70b5332052d4 # Target file: checkm_output/bins/pm190/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm190/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/413672cf-9c64-46b6-b5d3-70b5332052d4 checkm_output/bins/pm190/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:35 2020 # [ok]