# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_33 - 221 MipZ PF09140.6 261 2.6e-10 31.2 1.8 1 1 2.5e-09 8.7e-08 22.9 1.3 2 130 4 111 3 132 0.75 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ATP_bind_1 PF03029.12 238 0.00029 11.8 0.2 1 1 0.00015 0.0052 7.7 0.2 6 40 13 47 10 115 0.83 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 SRP54 PF00448.17 196 0.00017 12.4 0.1 1 1 1.1e-05 0.00037 11.4 0.1 10 98 12 94 3 134 0.78 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 MobB PF03205.9 140 3.7e-06 18.1 0.7 1 2 1e-05 0.00035 11.7 0.3 2 37 4 40 3 52 0.86 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 MobB PF03205.9 140 3.7e-06 18.1 0.7 2 2 0.0016 0.055 4.6 0.0 44 75 85 119 72 133 0.81 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ArsA_ATPase PF02374.10 305 2.4e-09 28.0 0.1 1 1 1.2e-10 4.3e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 VirC1 PF07015.6 231 5e-09 26.9 0.0 1 1 2.6e-10 9.2e-09 26.1 0.0 3 55 4 56 2 61 0.92 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 Fer4_NifH PF00142.13 273 5.3e-07 20.4 0.2 1 1 3.7e-08 1.3e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 CbiA PF01656.18 195 1.4e-15 48.6 0.6 1 1 1.1e-16 3.8e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_24 - 171 Ribosomal_L20 PF00453.13 108 2.8e-05 15.5 0.0 1 1 1.4e-06 4.8e-05 14.7 0.0 45 98 72 126 51 133 0.86 # 12692 # 13204 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.534 1_33 - 221 AAA_31 PF13614.1 157 2.8e-07 22.0 0.0 1 2 8.5e-07 3e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 AAA_31 PF13614.1 157 2.8e-07 22.0 0.0 2 2 0.0021 0.074 4.4 0.0 111 151 73 112 63 115 0.83 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ArgK PF03308.11 267 0.00019 11.6 0.1 1 2 1.6e-05 0.00056 10.1 0.1 37 66 11 40 3 45 0.88 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ArgK PF03308.11 267 0.00019 11.6 0.1 2 2 0.071 2.5 -1.8 0.0 154 174 88 107 63 144 0.54 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 GTP_EFTU PF00009.22 188 8.3e-08 23.3 0.1 1 1 2.6e-09 9.3e-08 23.1 0.1 15 139 15 153 6 211 0.72 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d1c95066-01cb-4a43-b6e4-d4723d9c7c29 # Target file: checkm_output/bins/pm1899/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1899/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d1c95066-01cb-4a43-b6e4-d4723d9c7c29 checkm_output/bins/pm1899/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:34 2020 # [ok]