# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 207 cobW PF02492.14 178 0.00019 13.4 0.2 1 2 1.8e-05 0.0014 10.6 0.0 10 38 12 41 3 47 0.86 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 cobW PF02492.14 178 0.00019 13.4 0.2 2 2 0.019 1.5 0.7 0.1 114 146 115 147 71 170 0.78 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 IstB_IS21 PF01695.12 178 0.00044 12.2 0.0 1 1 1.1e-05 0.00087 11.3 0.0 44 66 160 182 136 186 0.87 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 MipZ PF09140.6 261 1.4e-14 46.3 0.9 1 2 1.3e-11 1e-09 30.4 0.0 2 47 3 47 2 57 0.88 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 MipZ PF09140.6 261 1.4e-14 46.3 0.9 2 2 8.2e-07 6.4e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 AAA_22 PF13401.1 131 0.00046 12.9 0.0 1 1 1e-05 0.0008 12.1 0.0 5 30 164 189 160 241 0.69 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 DUF1611 PF07755.6 301 2.9e-06 18.6 0.3 1 1 5.8e-08 4.5e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 ATP_bind_1 PF03029.12 238 3.7e-05 15.9 0.0 1 1 1.7e-06 6.5e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 ATP_bind_1 PF03029.12 238 0.00035 12.7 0.0 1 1 1.4e-05 0.00053 12.1 0.0 2 23 169 190 168 206 0.87 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 SRP54 PF00448.17 196 8.2e-05 14.6 0.4 1 1 3.6e-06 0.00028 12.9 0.3 11 54 12 50 2 142 0.73 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 AAA_17 PF13207.1 121 3.6e-05 17.2 0.0 1 1 2e-06 7.9e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 AAA_17 PF13207.1 121 6.6e-05 16.3 0.0 1 1 2.3e-06 8.9e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 MobB PF03205.9 140 2e-06 20.1 0.4 1 1 2.7e-07 1.1e-05 17.8 0.1 10 104 12 88 2 104 0.68 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 MobB PF03205.9 140 9.6e-05 14.7 0.0 1 1 4.3e-06 0.00017 13.9 0.0 2 42 165 204 164 227 0.86 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 LpxK PF02606.9 326 4.2e-05 15.1 0.1 1 1 8.4e-07 6.5e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 ArsA_ATPase PF02374.10 305 2.2e-08 26.0 0.2 1 1 4.8e-10 3.8e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 T2SE PF00437.15 272 1.7e-53 173.8 0.0 1 1 2.7e-55 2.1e-53 173.4 0.0 12 267 25 312 16 316 0.89 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 Zeta_toxin PF06414.7 201 1.2e-05 17.0 0.0 1 1 2.5e-07 1.9e-05 16.3 0.0 6 59 153 208 148 232 0.81 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 VirC1 PF07015.6 231 5.8e-15 47.5 0.2 1 1 1.5e-16 1.2e-14 46.5 0.2 1 131 1 123 1 174 0.79 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 Fer4_NifH PF00142.13 273 1.2e-06 20.4 0.0 1 1 2.8e-08 2.2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 AAA_16 PF13191.1 185 0.00087 11.8 0.0 1 1 1.5e-05 0.0012 11.4 0.0 22 54 161 194 151 300 0.75 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 AAA_23 PF13476.1 202 0.00027 13.8 0.1 1 1 6.3e-06 0.00049 13.0 0.1 21 38 165 182 152 185 0.88 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 CbiA PF01656.18 195 8.2e-29 92.9 1.6 1 1 2.7e-30 2.1e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 KaiC PF06745.8 227 0.00038 12.1 0.0 1 1 8.7e-06 0.00068 11.3 0.0 6 37 150 181 147 187 0.90 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 AAA_29 PF13555.1 62 0.00012 14.2 0.0 1 1 3.3e-06 0.00026 13.1 0.0 21 43 161 183 149 186 0.83 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 DUF258 PF03193.11 161 0.00016 13.5 0.0 1 1 3.2e-06 0.00025 12.8 0.0 31 59 158 187 141 220 0.80 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_36 - 612 TraG-D_C PF12696.2 128 2e-27 88.2 0.0 1 1 4.3e-29 3.4e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 25384 # 27219 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_3 - 207 AAA_31 PF13614.1 157 1.4e-08 27.4 0.3 1 2 9.4e-09 7.3e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 AAA_31 PF13614.1 157 1.4e-08 27.4 0.3 2 2 0.0047 0.36 3.3 0.0 115 152 74 109 58 114 0.83 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 NTPase_1 PF03266.10 168 0.00029 13.1 0.1 1 1 1.1e-05 0.00089 11.5 0.0 7 58 10 66 5 94 0.80 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 AAA_33 PF13671.1 143 1.2e-05 17.7 0.0 1 2 0.07 5.4 -0.6 0.0 7 39 96 127 93 164 0.78 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 AAA_33 PF13671.1 143 1.2e-05 17.7 0.0 2 2 6.8e-07 5.3e-05 15.7 0.0 2 25 166 191 165 274 0.71 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 AAA_30 PF13604.1 196 0.00027 13.1 0.4 1 1 7.4e-06 0.00058 12.0 0.1 26 106 10 88 2 97 0.75 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 ABC_tran PF00005.22 137 4.2e-05 16.4 0.0 1 1 1.5e-06 0.00012 15.0 0.0 7 32 159 184 155 226 0.85 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_26 - 918 AAA_10 PF12846.2 304 7.1e-36 116.7 0.0 1 1 3.1e-37 1.2e-35 115.9 0.0 3 294 539 825 538 832 0.93 # 15025 # 17778 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_3 - 207 AAA_10 PF12846.2 304 1e-05 17.6 0.0 1 1 4.7e-07 1.8e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_15 - 260 DUF3584 PF12128.3 1201 0.091 2.5 19.6 1 1 0.0029 0.23 1.2 19.6 311 508 41 244 38 250 0.75 # 13434 # 14213 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_35 - 344 DEAD PF00270.24 169 0.00016 13.7 0.0 1 1 3.6e-06 0.00028 13.0 0.0 6 33 154 182 150 246 0.77 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_36 - 612 TrwB_AAD_bind PF10412.4 386 3.8e-21 67.6 0.0 1 1 7.6e-23 6e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 25384 # 27219 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_36 - 612 T4SS-DNA_transf PF02534.9 469 6.4e-146 479.1 0.0 1 1 1e-147 7.8e-146 478.8 0.0 2 461 102 571 101 578 0.98 # 25384 # 27219 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_3 - 207 ArgK PF03308.11 267 8.5e-05 13.9 0.0 1 1 2.5e-06 0.0002 12.7 0.0 39 72 12 45 5 53 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 UPF0079 PF02367.12 123 0.00033 12.8 0.0 1 1 7.5e-06 0.00059 12.1 0.0 7 39 155 187 149 196 0.83 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 AAA_24 PF13479.1 213 0.00049 12.3 0.6 1 2 1.7e-05 0.0013 10.9 0.1 12 88 11 95 3 99 0.81 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 AAA_24 PF13479.1 213 0.00049 12.3 0.6 2 2 0.078 6.1 -1.1 0.0 168 206 118 156 115 164 0.79 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_12 - 276 AAA_25 PF13481.1 194 3.6e-36 116.9 0.0 1 1 1.3e-37 5e-36 116.4 0.0 15 193 9 180 3 181 0.87 # 10377 # 11204 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_35 - 344 AAA_25 PF13481.1 194 0.00018 13.5 0.0 1 1 6.4e-06 0.00025 13.0 0.0 21 51 151 181 139 248 0.87 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d8b517e3-e581-4a20-804a-9f214ea6ba0b # Target file: checkm_output/bins/pm1893/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1893/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d8b517e3-e581-4a20-804a-9f214ea6ba0b checkm_output/bins/pm1893/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:31 2020 # [ok]