# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 220 Methyltransf_12 PF08242.7 99 1e-15 49.1 0.1 1 2 2.3e-16 6.3e-15 46.6 0.0 1 99 54 152 54 152 0.95 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_5 - 220 Methyltransf_12 PF08242.7 99 1e-15 49.1 0.1 2 2 0.067 1.8 0.2 0.0 49 70 181 202 159 214 0.77 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 207 cobW PF02492.14 178 0.00013 12.5 0.1 1 2 2.8e-05 0.00075 10.0 0.0 10 38 12 41 3 48 0.86 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 cobW PF02492.14 178 0.00013 12.5 0.1 2 2 0.031 0.85 0.1 0.0 114 146 115 147 71 158 0.76 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_20 - 519 Seryl_tRNA_N PF02403.17 108 0.072 4.2 15.4 1 2 0.0011 0.029 5.5 0.4 36 106 243 314 218 316 0.72 # 19282 # 20838 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_20 - 519 Seryl_tRNA_N PF02403.17 108 0.072 4.2 15.4 2 2 0.00048 0.013 6.7 2.0 26 93 436 507 414 517 0.81 # 19282 # 20838 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_17 - 322 Saccharop_dh PF03435.13 386 7.6e-07 19.4 0.3 1 2 2.8e-07 7.5e-06 16.1 0.6 1 100 26 159 26 206 0.70 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_17 - 322 Saccharop_dh PF03435.13 386 7.6e-07 19.4 0.3 2 2 0.028 0.75 -0.4 0.0 261 307 256 298 223 306 0.75 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 207 MipZ PF09140.6 261 5.9e-14 42.7 0.9 1 2 2.4e-10 6.5e-09 26.2 0.0 2 47 3 47 2 56 0.88 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 MipZ PF09140.6 261 5.9e-14 42.7 0.9 2 2 5.1e-07 1.4e-05 15.3 0.3 96 141 73 118 49 150 0.84 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_18 PF12847.2 112 3.3e-11 34.9 0.0 1 1 2.8e-12 7.5e-11 33.7 0.0 3 107 51 152 50 157 0.86 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 207 DUF1611 PF07755.6 301 7.4e-07 19.1 0.4 1 1 4.4e-08 1.2e-06 18.4 0.4 124 200 13 90 11 105 0.87 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 ATP_bind_1 PF03029.12 238 6.2e-06 16.9 0.1 1 1 3.7e-07 1e-05 16.2 0.1 6 44 12 50 10 74 0.84 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_11 PF08241.7 95 1.6e-13 42.1 0.0 1 1 1.1e-14 3e-13 41.2 0.0 1 93 54 152 54 153 0.91 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_17 - 322 NAD_binding_7 PF13241.1 103 1.6e-05 16.2 0.0 1 1 1.4e-06 3.8e-05 15.0 0.0 5 91 21 144 19 148 0.70 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 207 AAA_17 PF13207.1 121 0.00018 13.4 0.0 1 1 1.1e-05 0.0003 12.7 0.0 9 80 12 86 11 156 0.69 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 MobB PF03205.9 140 2.5e-05 15.1 0.1 1 1 5.2e-06 0.00014 12.6 0.1 10 102 12 86 2 105 0.68 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_17 - 322 Semialdhyde_dh PF01118.19 121 0.00037 11.9 0.6 1 2 5.7e-05 0.0015 9.9 0.0 1 100 25 124 25 146 0.81 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_17 - 322 Semialdhyde_dh PF01118.19 121 0.00037 11.9 0.6 2 2 0.097 2.6 -0.5 0.2 3 12 145 154 143 156 0.87 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 207 ArsA_ATPase PF02374.10 305 1.7e-07 21.6 0.2 1 1 1e-08 2.8e-07 20.9 0.1 5 45 6 46 1 84 0.91 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_17 - 322 Shikimate_DH PF01488.15 135 3.7e-05 14.9 0.2 1 1 2.4e-06 6.6e-05 14.1 0.2 7 36 18 47 12 53 0.87 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_15 - 66 TGS PF02824.16 60 0.00026 11.9 0.0 1 1 1.5e-05 0.00041 11.3 0.0 28 59 24 59 10 60 0.75 # 14736 # 14933 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_8 - 207 VirC1 PF07015.6 231 5.2e-15 46.2 0.2 1 1 3.5e-16 9.5e-15 45.3 0.2 1 129 1 121 1 157 0.81 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 Fer4_NifH PF00142.13 273 8.3e-08 22.7 0.0 1 1 5.2e-09 1.4e-07 22.0 0.0 8 63 10 65 3 91 0.88 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 CbiA PF01656.18 195 6.9e-28 88.4 1.4 1 1 5.6e-29 1.5e-27 87.3 1.4 1 143 4 124 4 170 0.74 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_25 PF13649.1 101 1.1e-07 23.3 0.0 1 1 6.6e-09 1.8e-07 22.6 0.0 2 82 54 129 53 150 0.79 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 361 FAD_binding_2 PF00890.19 417 4.1e-06 16.8 0.2 1 1 2.2e-07 5.8e-06 16.3 0.2 4 51 56 102 55 238 0.89 # 13657 # 14739 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.624 1_15 - 66 ThiS PF02597.15 77 1.7e-12 38.8 0.0 1 1 7.1e-14 1.9e-12 38.6 0.0 17 77 10 65 3 65 0.90 # 14736 # 14933 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_8 - 207 AAA_31 PF13614.1 157 1.6e-08 25.7 0.2 1 2 1.2e-07 3.3e-06 18.2 0.0 1 39 2 40 2 46 0.94 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 AAA_31 PF13614.1 157 1.6e-08 25.7 0.2 2 2 0.0011 0.029 5.4 0.0 115 152 74 109 58 114 0.83 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_26 PF13659.1 117 2.6e-08 25.0 0.0 1 1 1.2e-09 3.3e-08 24.7 0.0 3 75 52 120 50 214 0.88 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_17 - 322 2-Hacid_dh_C PF02826.14 178 0.00022 11.5 0.0 1 1 1.5e-05 0.00041 10.6 0.0 28 73 15 61 1 77 0.74 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 207 AAA_30 PF13604.1 196 8.8e-05 13.2 0.2 1 1 6.7e-06 0.00018 12.2 0.2 26 106 10 88 2 97 0.78 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 MTS PF05175.9 170 5.9e-13 39.6 0.2 1 1 5.5e-14 1.5e-12 38.3 0.1 21 136 39 152 36 158 0.88 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_5 - 220 Methyltransf_9 PF08003.6 315 1.9e-05 14.5 0.0 1 1 8.2e-07 2.2e-05 14.3 0.0 95 174 30 104 10 167 0.71 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 207 AAA_10 PF12846.2 304 1.8e-05 15.3 0.0 1 1 7.9e-07 2.1e-05 15.1 0.0 11 47 12 50 10 171 0.91 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 NodS PF05401.6 201 3e-07 21.0 0.0 1 1 1.5e-08 4.1e-07 20.6 0.0 16 146 20 160 15 169 0.75 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 361 DAO PF01266.19 358 2.9e-31 99.6 2.1 1 1 1.3e-30 3.6e-29 92.7 2.1 4 356 56 351 53 354 0.84 # 13657 # 14739 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.624 1_17 - 322 ThiF PF00899.16 136 7.5e-40 127.0 0.0 1 1 4.6e-41 1.3e-39 126.3 0.0 2 132 23 153 22 155 0.98 # 15711 # 16676 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.636 1_5 - 220 Methyltransf_31 PF13847.1 152 1.1e-11 35.6 0.0 1 1 7.3e-13 2e-11 34.8 0.0 5 106 51 152 47 166 0.89 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 361 Pyr_redox PF00070.22 80 0.00013 13.5 0.0 1 2 0.00014 0.0039 8.7 0.0 2 30 54 82 53 86 0.88 # 13657 # 14739 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.624 1_14 - 361 Pyr_redox PF00070.22 80 0.00013 13.5 0.0 2 2 0.018 0.5 2.0 0.0 40 58 185 203 179 210 0.84 # 13657 # 14739 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.624 1_8 - 207 ArgK PF03308.11 267 3.1e-05 13.8 0.0 1 1 2.7e-06 7.3e-05 12.6 0.0 39 72 12 45 5 54 0.89 # 11004 # 11624 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_23 PF13489.1 161 8.1e-12 36.2 0.0 1 1 3.9e-13 1e-11 35.8 0.0 15 152 43 196 29 214 0.84 # 8435 # 9094 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9a1137ce-55a7-4daa-8f0f-702b0ad7b9c1 # Target file: checkm_output/bins/pm1883/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1883/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9a1137ce-55a7-4daa-8f0f-702b0ad7b9c1 checkm_output/bins/pm1883/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:24 2020 # [ok]