# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_85 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 1 2 0.00026 0.025 7.0 0.0 103 123 17 37 4 88 0.71 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_85 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 2 2 6.4e-05 0.0062 9.0 0.0 28 54 163 188 158 220 0.67 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_11 - 503 Rad17 PF03215.10 519 0.0012 10.4 0.0 1 1 1.8e-05 0.0018 9.8 0.0 42 69 226 253 217 264 0.81 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_90 - 209 MipZ PF09140.6 261 1.8e-21 69.2 0.5 1 2 1.2e-12 1.2e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 MipZ PF09140.6 261 1.8e-21 69.2 0.5 2 2 1.6e-12 1.6e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 YhjQ PF06564.7 244 2.3e-05 16.7 0.3 1 2 1.8e-06 0.00018 13.8 0.3 4 38 3 37 1 50 0.89 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 YhjQ PF06564.7 244 2.3e-05 16.7 0.3 2 2 0.029 2.9 0.0 0.0 108 144 69 103 44 113 0.78 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_77 - 176 SSB PF00436.20 104 5.9e-41 131.5 0.3 1 1 7.9e-43 7.7e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 75639 # 76166 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_51 - 768 DUF87 PF01935.12 229 0.00029 13.5 0.1 1 2 5e-05 0.0025 10.5 0.0 16 40 130 153 120 168 0.80 # 49880 # 52183 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_51 - 768 DUF87 PF01935.12 229 0.00029 13.5 0.1 2 2 0.082 4 0.0 0.1 111 173 640 701 622 729 0.63 # 49880 # 52183 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_21 - 383 DUF87 PF01935.12 229 0.00054 12.7 0.0 1 1 2.1e-05 0.001 11.8 0.0 28 46 162 180 161 192 0.87 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 NB-ARC PF00931.17 287 0.00029 12.6 0.0 1 2 9.7e-06 0.00095 10.9 0.0 18 49 156 185 145 192 0.81 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 NB-ARC PF00931.17 287 0.00029 12.6 0.0 2 2 0.069 6.8 -1.7 0.0 208 236 331 357 326 367 0.70 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 AAA_22 PF13401.1 131 3.6e-06 20.0 0.0 1 1 1.5e-07 7.5e-06 19.0 0.0 3 48 156 198 153 233 0.77 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_11 - 503 AAA_22 PF13401.1 131 5.1e-06 19.6 0.0 1 1 2e-07 9.8e-06 18.6 0.0 4 49 229 281 225 330 0.84 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 228 Methyltransf_11 PF08241.7 95 0.00062 13.2 0.0 1 2 0.0024 0.24 4.9 0.0 78 93 53 68 48 70 0.84 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_85 - 228 Methyltransf_11 PF08241.7 95 0.00062 13.2 0.0 2 2 0.0014 0.14 5.7 0.0 5 54 172 220 168 226 0.82 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_90 - 209 SRP54 PF00448.17 196 2.4e-07 23.2 0.1 1 1 1.5e-08 1.5e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_85 - 228 N6_N4_Mtase PF01555.13 231 4.4e-37 120.6 0.0 1 1 1.8e-36 1.7e-34 112.1 0.0 1 228 21 200 21 203 0.91 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_90 - 209 AAA_17 PF13207.1 121 1.5e-05 18.7 0.0 1 1 1.2e-06 4e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_17 PF13207.1 121 5e-05 17.0 0.0 1 1 4.1e-06 0.00013 15.6 0.0 1 32 231 264 231 361 0.79 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 383 AAA_17 PF13207.1 121 0.00038 14.2 0.0 1 1 2.7e-05 0.00089 13.0 0.0 3 22 161 180 161 245 0.81 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_90 - 209 MobB PF03205.9 140 5.6e-05 15.8 0.1 1 1 1.6e-06 0.00016 14.3 0.0 10 42 11 41 1 46 0.79 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 ArsA_ATPase PF02374.10 305 4.3e-08 25.4 0.9 1 3 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 ArsA_ATPase PF02374.10 305 4.3e-08 25.4 0.9 2 3 0.053 5.2 -1.2 0.0 121 135 69 85 47 86 0.75 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 ArsA_ATPase PF02374.10 305 4.3e-08 25.4 0.9 3 3 0.075 7.4 -1.7 0.0 205 234 132 161 118 202 0.65 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 T2SE PF00437.15 272 2.7e-38 124.2 0.0 1 1 8.5e-40 4.1e-38 123.6 0.0 66 269 161 378 143 381 0.87 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 383 T2SE PF00437.15 272 7.5e-35 112.9 0.0 1 1 2.2e-36 1.1e-34 112.5 0.0 111 261 144 292 23 309 0.79 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_11 - 503 Zeta_toxin PF06414.7 201 0.00081 11.4 0.0 1 1 1.4e-05 0.0014 10.6 0.0 18 39 231 252 216 259 0.79 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_90 - 209 VirC1 PF07015.6 231 3.3e-09 29.0 0.0 1 1 7.1e-11 7e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 Fer4_NifH PF00142.13 273 7.3e-05 14.9 0.2 1 1 2.3e-06 0.00022 13.3 0.0 8 38 9 39 2 46 0.89 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_16 PF13191.1 185 3.1e-05 16.9 0.0 1 1 1.1e-06 5.5e-05 16.1 0.0 13 52 222 263 216 369 0.84 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 383 AAA_16 PF13191.1 185 3.5e-05 16.7 0.1 1 1 2e-06 9.9e-05 15.2 0.1 25 62 158 192 148 338 0.76 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 AAA_23 PF13476.1 202 1.7e-05 18.0 0.0 1 1 6.7e-07 3.3e-05 17.1 0.0 20 46 158 185 144 219 0.81 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_11 - 503 AAA_23 PF13476.1 202 7.4e-05 16.0 0.0 1 1 2.9e-06 0.00014 15.1 0.0 20 37 230 247 225 262 0.90 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 383 AAA_18 PF13238.1 129 0.0001 15.5 0.0 1 1 3.9e-06 0.00019 14.6 0.0 2 38 161 193 161 238 0.71 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_11 - 503 AAA_18 PF13238.1 129 0.0011 12.2 0.1 1 1 5.3e-05 0.0026 11.0 0.1 1 18 232 249 232 267 0.87 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_90 - 209 CbiA PF01656.18 195 1.7e-22 72.6 0.0 1 1 3.1e-24 3e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_14 PF13173.1 128 0.0011 11.8 0.0 1 1 2.2e-05 0.0022 10.8 0.0 3 30 230 255 228 267 0.86 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_11 - 503 AAA_29 PF13555.1 62 1.6e-05 17.3 0.0 1 1 7.9e-07 3.9e-05 16.1 0.0 20 40 227 246 219 255 0.84 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 383 AAA_29 PF13555.1 62 2.2e-05 16.9 0.0 1 1 1.1e-06 5.3e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 Sigma54_activat PF00158.21 168 0.00064 12.1 0.0 1 1 1.3e-05 0.0012 11.2 0.0 26 47 161 182 145 193 0.84 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_51 - 768 TraG-D_C PF12696.2 128 4.9e-08 25.8 0.2 1 1 5e-10 4.9e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 49880 # 52183 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_90 - 209 AAA_31 PF13614.1 157 4.2e-06 19.6 0.0 1 2 2.5e-07 2.5e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 AAA_31 PF13614.1 157 4.2e-06 19.6 0.0 2 2 0.055 5.4 -0.2 0.0 109 127 68 86 62 113 0.68 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_33 PF13671.1 143 0.00067 12.4 0.0 1 1 1.6e-05 0.0016 11.2 0.0 1 19 231 249 231 333 0.71 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 228 Methyltransf_26 PF13659.1 117 8.5e-12 38.1 0.0 1 2 1.5e-07 1.5e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_85 - 228 Methyltransf_26 PF13659.1 117 8.5e-12 38.1 0.0 2 2 1.3e-07 1.3e-05 18.1 0.0 4 44 167 206 164 221 0.82 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_37 - 720 Bac_GDH PF05088.7 1528 0.00096 9.4 0.1 1 1 1.4e-05 0.0013 8.9 0.1 365 464 258 363 248 375 0.80 # 37824 # 39983 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_11 - 503 AAA_30 PF13604.1 196 6.6e-09 28.5 0.0 1 1 1.2e-10 1.2e-08 27.6 0.0 2 45 213 256 212 263 0.92 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 383 FtsK_SpoIIIE PF01580.13 205 0.00068 12.0 0.0 1 1 1.2e-05 0.0012 11.2 0.0 40 60 159 179 128 231 0.80 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_28 - 238 AAA_27 PF13514.1 1111 0.00034 11.2 2.7 1 1 4.5e-06 0.00044 10.8 2.7 316 391 97 171 94 182 0.90 # 29335 # 30048 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.591 1_21 - 383 ABC_tran PF00005.22 137 2.1e-05 17.7 0.0 1 1 8.1e-07 4e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_11 - 503 ABC_tran PF00005.22 137 0.00034 13.8 0.0 1 1 1.2e-05 0.0006 13.0 0.0 12 37 230 255 224 364 0.90 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 1 2 0.00039 0.038 6.2 0.0 112 146 18 54 9 81 0.65 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_85 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 2 2 3.9e-05 0.0039 9.5 0.0 41 62 162 183 145 219 0.78 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_11 - 503 AAA_19 PF13245.1 76 1.1e-06 21.2 0.0 1 1 5.8e-08 2.8e-06 19.9 0.0 1 36 219 255 219 272 0.76 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_90 - 209 AAA_19 PF13245.1 76 0.00028 13.5 0.1 1 2 0.00019 0.0095 8.6 0.0 20 48 11 35 9 44 0.84 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_90 - 209 AAA_19 PF13245.1 76 0.00028 13.5 0.1 2 2 0.021 1 2.1 0.0 42 63 135 158 118 184 0.76 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_33 - 1015 AAA_10 PF12846.2 304 1.8e-31 102.5 0.0 1 1 2.6e-32 5e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 32356 # 35400 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.579 1_51 - 768 AAA_10 PF12846.2 304 8.6e-07 21.5 0.2 1 1 8.8e-08 1.7e-06 20.5 0.2 2 292 137 506 136 516 0.68 # 49880 # 52183 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_21 - 383 AAA_10 PF12846.2 304 2e-05 17.0 0.2 1 2 1.7e-05 0.00034 12.9 0.1 3 22 159 178 157 187 0.85 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 AAA_10 PF12846.2 304 2e-05 17.0 0.2 2 2 0.017 0.34 3.1 0.0 178 247 256 347 173 352 0.54 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_90 - 209 AAA_10 PF12846.2 304 0.00015 14.1 0.0 1 1 1.3e-05 0.00025 13.4 0.0 11 39 11 39 3 66 0.90 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_10 PF12846.2 304 0.00054 12.3 0.0 1 1 4.2e-05 0.00082 11.7 0.0 4 28 232 256 229 362 0.77 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_11 - 503 DEAD PF00270.24 169 0.0011 11.4 0.0 1 1 1.6e-05 0.0016 10.8 0.0 3 39 216 254 214 340 0.82 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_64 - 283 Methyltransf_27 PF13708.1 194 4.4e-67 218.2 0.0 1 1 6.4e-69 6.3e-67 217.7 0.0 2 194 85 278 84 278 0.96 # 65586 # 66434 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_51 - 768 TrwB_AAD_bind PF10412.4 386 5.3e-07 21.4 0.2 1 2 0.00021 0.02 6.3 0.0 11 32 132 153 126 164 0.80 # 49880 # 52183 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_51 - 768 TrwB_AAD_bind PF10412.4 386 5.3e-07 21.4 0.2 2 2 2.5e-06 0.00024 12.6 0.1 260 332 452 525 435 578 0.75 # 49880 # 52183 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_11 - 503 AAA_11 PF13086.1 236 0.0005 12.5 0.0 1 1 6.7e-06 0.00066 12.1 0.0 2 41 213 253 212 353 0.86 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.6 0.0 1 2 0.015 1.5 1.0 0.0 175 188 18 31 8 92 0.82 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_85 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.6 0.0 2 2 4e-05 0.0039 9.5 0.0 20 46 163 189 148 197 0.78 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_21 - 383 RNA_helicase PF00910.17 107 5.3e-05 16.3 0.0 1 1 1e-06 0.0001 15.4 0.0 2 33 161 190 160 201 0.82 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_1 - 214 TIGR00922 TIGR00922 172 0.00021 13.7 0.0 1 1 2.6e-06 0.00025 13.5 0.0 54 104 105 155 56 176 0.87 # 565 # 1206 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_21 - 383 NACHT PF05729.7 166 0.00063 12.3 0.0 1 1 1.4e-05 0.0014 11.2 0.0 4 30 161 187 159 193 0.82 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 383 AAA_25 PF13481.1 194 8.4e-06 18.2 0.0 1 1 4.2e-07 1.4e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 20378 # 21526 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_90 - 209 AAA_25 PF13481.1 194 0.00011 14.4 0.1 1 1 9.3e-06 0.0003 13.1 0.0 42 87 10 44 3 90 0.78 # 84464 # 85090 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_11 - 503 AAA_25 PF13481.1 194 0.00013 14.2 0.0 1 1 1.1e-05 0.00036 12.8 0.0 19 64 214 260 202 276 0.79 # 10648 # 12156 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 228 Methyltransf_15 PF09445.5 164 0.00081 11.8 0.0 1 2 0.042 4.1 -0.2 0.0 53 79 4 29 2 33 0.90 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_85 - 228 Methyltransf_15 PF09445.5 164 0.00081 11.8 0.0 2 2 4.7e-05 0.0046 9.4 0.0 3 31 166 194 164 206 0.87 # 79919 # 80602 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1a4b2a74-6c6c-4279-9ecf-9c9ff2f37c80 # Target file: checkm_output/bins/pm1881/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1881/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1a4b2a74-6c6c-4279-9ecf-9c9ff2f37c80 checkm_output/bins/pm1881/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:27 2020 # [ok]