# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 145 Mg_chelatase PF01078.16 207 0.00032 13.0 0.0 1 1 4.2e-06 0.00048 12.4 0.0 23 42 98 117 83 124 0.89 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_29 - 188 Methyltransf_12 PF08242.7 99 2e-05 18.1 0.0 1 1 3.1e-07 3.6e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_17 - 228 UPF0020 PF01170.13 180 6.6e-06 18.9 0.0 1 2 0.00025 0.014 8.0 0.0 102 118 16 32 5 77 0.83 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 UPF0020 PF01170.13 180 6.6e-06 18.9 0.0 2 2 0.00013 0.0073 9.0 0.0 28 54 163 189 158 220 0.67 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_29 - 188 UPF0020 PF01170.13 180 0.001 11.8 0.0 1 1 5.8e-05 0.0034 10.1 0.0 18 43 40 65 32 130 0.71 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_29 - 188 RrnaAD PF00398.15 262 1.3e-08 27.3 0.0 1 1 1.4e-10 1.6e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_1 - 230 ABC_ATPase PF09818.4 448 0.0019 9.8 0.0 1 1 2.1e-05 0.0024 9.5 0.0 243 265 32 54 7 60 0.79 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_6 - 145 IstB_IS21 PF01695.12 178 1.5e-34 112.1 0.2 1 2 0.029 3.3 0.2 0.2 83 111 4 32 2 33 0.86 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 IstB_IS21 PF01695.12 178 1.5e-34 112.1 0.2 2 2 7.2e-36 8.3e-34 109.6 0.0 1 81 51 131 51 136 0.98 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 7_3 - 176 SSB PF00436.20 104 2.8e-41 132.8 0.4 1 1 3.4e-43 3.9e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 2066 # 2593 # -1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_29 - 188 Methyltransf_18 PF12847.2 112 2.2e-10 34.3 0.0 1 1 3.9e-12 4.5e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_9 - 1757 UvrD_C_2 PF13538.1 104 1.5e-07 24.7 0.7 1 2 0.013 1.5 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_9 - 1757 UvrD_C_2 PF13538.1 104 1.5e-07 24.7 0.7 2 2 5.2e-08 6e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_28 - 877 DUF87 PF01935.12 229 2.7e-07 23.7 0.0 1 1 6.9e-09 8e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 5_1 - 230 NB-ARC PF00931.17 287 0.00071 11.6 0.0 1 1 8.8e-06 0.001 11.0 0.0 18 38 32 52 20 61 0.89 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_6 - 145 AAA_22 PF13401.1 131 0.00058 13.1 0.0 1 1 2.2e-05 0.0013 12.0 0.0 5 21 98 114 94 132 0.85 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 5_1 - 230 AAA_22 PF13401.1 131 0.00091 12.5 0.0 1 1 2.2e-05 0.0013 12.1 0.0 4 51 33 82 29 122 0.79 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 5_1 - 230 ATP_bind_1 PF03029.12 238 0.00028 13.6 0.0 1 1 3.3e-06 0.00038 13.1 0.0 1 26 38 63 38 68 0.87 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_17 - 228 Methyltransf_11 PF08241.7 95 0.00056 13.5 0.0 1 3 0.061 7.1 0.4 0.0 55 65 15 25 2 28 0.73 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 Methyltransf_11 PF08241.7 95 0.00056 13.5 0.0 2 3 0.0054 0.63 3.8 0.0 79 93 54 68 45 70 0.84 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 Methyltransf_11 PF08241.7 95 0.00056 13.5 0.0 3 3 0.0018 0.2 5.3 0.0 5 53 172 219 168 226 0.82 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 5_1 - 230 SRP54 PF00448.17 196 0.00033 13.3 0.1 1 1 4e-06 0.00046 12.8 0.1 2 30 34 62 33 65 0.89 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 5_1 - 230 AAA_15 PF13175.1 415 2.1e-09 29.9 0.1 1 1 2.2e-11 2.5e-09 29.7 0.1 2 56 12 84 11 109 0.66 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_17 - 228 N6_N4_Mtase PF01555.13 231 1.3e-35 116.0 0.0 1 2 1.8e-14 2.1e-12 40.1 0.0 1 114 21 124 21 141 0.85 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 N6_N4_Mtase PF01555.13 231 1.3e-35 116.0 0.0 2 2 5.4e-25 6.3e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_6 - 145 AAA_17 PF13207.1 121 2e-05 18.5 0.1 1 2 0.077 4.4 1.3 0.0 22 52 10 45 5 91 0.60 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_17 PF13207.1 121 2e-05 18.5 0.1 2 2 3.2e-06 0.00019 15.4 0.0 2 25 100 119 99 141 0.77 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 745 AAA_17 PF13207.1 121 0.00038 14.4 0.0 1 1 1.8e-05 0.001 13.0 0.0 3 28 189 218 187 303 0.70 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 5_1 - 230 AAA_21 PF13304.1 303 1.2e-08 28.3 0.1 1 1 1.4e-10 1.7e-08 27.8 0.1 1 62 35 90 35 114 0.70 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 5_1 - 230 Miro PF08477.8 119 0.00011 15.9 0.0 1 1 1.4e-06 0.00017 15.3 0.0 3 32 37 66 35 93 0.81 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_28 - 877 MobB PF03205.9 140 0.00085 12.2 0.1 1 1 5.4e-05 0.0031 10.3 0.0 4 37 484 516 482 524 0.79 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_10 - 745 MobB PF03205.9 140 0.0012 11.7 0.0 1 1 5.3e-05 0.0031 10.3 0.0 7 34 192 219 188 225 0.89 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 4_7 - 124 ADH_zinc_N PF00107.21 130 9.1e-07 21.6 0.0 1 1 8.9e-09 1e-06 21.4 0.0 9 93 2 85 1 106 0.85 # 2845 # 3216 # 1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 2_6 - 145 ArsA_ATPase PF02374.10 305 0.0011 11.1 0.0 1 1 1.6e-05 0.0019 10.3 0.0 6 34 102 130 98 134 0.87 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 PhoH PF02562.11 205 8.6e-07 21.5 0.0 1 1 1.1e-08 1.3e-06 20.8 0.0 15 48 93 126 80 140 0.85 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 5_1 - 230 SMC_N PF02463.14 220 1.2e-10 34.1 0.0 1 1 1.2e-12 1.3e-10 33.9 0.0 3 83 12 91 10 121 0.78 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_6 - 145 AAA_16 PF13191.1 185 1.8e-06 21.1 0.2 1 2 0.011 0.41 3.7 0.0 125 173 23 88 3 94 0.61 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_16 PF13191.1 185 1.8e-06 21.1 0.2 2 2 1.8e-06 7e-05 16.0 0.1 23 59 96 133 88 142 0.75 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 745 AAA_16 PF13191.1 185 4.9e-06 19.7 0.0 1 1 6.1e-07 2.4e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_34 - 123 AAA_16 PF13191.1 185 0.0016 11.6 0.1 1 1 6.8e-05 0.0026 10.8 0.1 22 48 86 112 80 119 0.88 # 32815 # 33183 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 5_1 - 230 AAA_23 PF13476.1 202 8.4e-12 38.9 0.0 1 1 1.6e-13 9.4e-12 38.8 0.0 2 54 14 78 13 137 0.72 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 13_1 - 122 AAA_23 PF13476.1 202 0.031 7.7 6.8 1 1 0.00066 0.039 7.4 6.8 149 199 28 93 3 95 0.58 # 3 # 368 # -1 # ID=13_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.571 2_6 - 145 AAA_18 PF13238.1 129 0.00028 14.3 0.1 1 1 6.1e-06 0.00071 13.0 0.0 1 19 100 118 100 140 0.82 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 5_1 - 230 AAA_13 PF13166.1 712 1.1e-05 17.2 0.3 1 1 1.1e-07 1.3e-05 16.9 0.3 11 54 28 73 18 109 0.65 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_6 - 145 CbiA PF01656.18 195 0.00024 13.6 0.0 1 1 4e-06 0.00046 12.7 0.0 9 31 107 129 100 136 0.93 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_29 - 188 Methyltransf_25 PF13649.1 101 0.00014 15.3 0.0 1 1 1.8e-06 0.00021 14.8 0.0 1 101 54 142 54 142 0.81 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_1 - 230 AAA_14 PF13173.1 128 0.00043 13.3 0.0 1 1 5.1e-06 0.00059 12.9 0.0 2 42 33 78 32 105 0.73 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 5_1 - 230 AAA_29 PF13555.1 62 6.7e-09 28.3 0.0 1 1 1e-10 1.2e-08 27.5 0.0 16 52 26 62 14 70 0.82 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_6 - 145 AAA PF00004.24 132 9e-06 19.1 0.1 1 2 0.092 11 -0.6 0.0 23 54 31 62 16 67 0.69 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA PF00004.24 132 9e-06 19.1 0.1 2 2 3e-07 3.5e-05 17.1 0.1 1 22 100 121 100 142 0.74 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 Bac_DnaA PF00308.13 219 0.00094 11.9 0.0 1 1 1.5e-05 0.0017 11.1 0.0 35 69 98 130 70 134 0.74 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_1 - 139 Ribosomal_S8 PF00410.14 129 0.0015 11.5 1.8 1 2 0.0059 0.68 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_1 - 139 Ribosomal_S8 PF00410.14 129 0.0015 11.5 1.8 2 2 0.00012 0.014 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 5_1 - 230 MMR_HSR1 PF01926.18 116 0.00085 12.4 0.0 1 1 1e-05 0.0012 12.0 0.0 3 28 37 64 35 100 0.81 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 5_1 - 230 DUF258 PF03193.11 161 0.0001 14.6 0.0 1 1 1.2e-06 0.00014 14.2 0.0 28 60 26 58 2 72 0.72 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_10 - 745 TraG-D_C PF12696.2 128 9.1e-21 67.2 0.0 1 1 1.4e-22 1.6e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_6 - 145 AAA_33 PF13671.1 143 0.00054 13.0 0.2 1 2 0.098 11 -1.0 0.0 49 49 44 44 5 77 0.51 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_33 PF13671.1 143 0.00054 13.0 0.2 2 2 1.3e-05 0.0016 11.5 0.1 2 19 100 117 100 128 0.88 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_34 - 123 KTI12 PF08433.5 270 0.00098 11.4 0.1 1 1 1.4e-05 0.0017 10.7 0.1 5 30 92 117 91 120 0.87 # 32815 # 33183 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_29 - 188 Methyltransf_26 PF13659.1 117 5.4e-14 45.4 0.0 1 1 1.6e-15 9.2e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_17 - 228 Methyltransf_26 PF13659.1 117 2e-12 40.3 0.1 1 2 8.4e-08 4.9e-06 19.7 0.0 54 114 4 71 2 86 0.76 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 Methyltransf_26 PF13659.1 117 2e-12 40.3 0.1 2 2 1.8e-07 1e-05 18.7 0.0 4 45 167 207 164 225 0.82 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_9 - 1757 AAA_30 PF13604.1 196 2e-44 144.6 15.6 1 3 0.04 2.3 0.8 0.0 41 86 223 269 218 282 0.84 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_9 - 1757 AAA_30 PF13604.1 196 2e-44 144.6 15.6 2 3 1.9e-05 0.0011 11.6 3.9 7 146 420 551 416 561 0.81 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_9 - 1757 AAA_30 PF13604.1 196 2e-44 144.6 15.6 3 3 9.9e-44 5.7e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_10 - 745 AAA_30 PF13604.1 196 0.00072 12.3 0.0 1 1 2.6e-05 0.0015 11.2 0.0 21 57 188 224 180 230 0.85 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 1.7e-05 17.5 0.1 1 2 4.1e-06 0.00024 13.7 0.0 39 63 477 505 464 508 0.84 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 1.7e-05 17.5 0.1 2 2 0.03 1.8 1.1 0.0 75 166 531 626 530 669 0.82 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 5_1 - 230 FtsK_SpoIIIE PF01580.13 205 0.00014 14.5 0.0 1 1 3.6e-06 0.00021 13.9 0.0 41 60 36 55 5 62 0.82 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_29 - 188 MTS PF05175.9 170 1e-09 31.1 0.0 1 1 1.2e-11 1.4e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_1 - 230 DUF2813 PF11398.3 373 1.2e-05 17.7 0.0 1 1 1.2e-07 1.4e-05 17.4 0.0 4 70 12 83 10 123 0.84 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 5_1 - 230 MukB PF04310.7 227 0.00077 11.9 0.0 1 1 8.7e-06 0.001 11.5 0.0 21 53 27 59 13 96 0.85 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_29 - 188 Methyltrans_SAM PF10672.4 286 0.00084 11.3 0.0 1 1 9.9e-06 0.0011 10.9 0.0 196 261 113 173 93 180 0.78 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_29 - 188 Met_10 PF02475.11 200 0.001 11.8 0.0 1 1 1.1e-05 0.0013 11.4 0.0 98 189 47 132 29 145 0.78 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_1 - 230 ABC_tran PF00005.22 137 5.3e-08 26.4 0.0 1 1 5.3e-10 6.2e-08 26.2 0.0 11 42 33 64 22 134 0.79 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 2_17 - 228 Cons_hypoth95 PF03602.10 183 1.4e-05 17.6 0.0 1 2 0.00037 0.043 6.3 0.0 112 128 18 34 5 81 0.69 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 Cons_hypoth95 PF03602.10 183 1.4e-05 17.6 0.0 2 2 4e-05 0.0047 9.4 0.0 41 62 162 183 145 218 0.78 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_6 - 145 RuvB_N PF05496.7 234 0.00012 14.3 0.0 1 1 1.2e-06 0.00014 14.0 0.0 48 70 95 117 68 140 0.85 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_19 PF13245.1 76 8.9e-08 25.0 0.1 1 1 1.2e-08 3.4e-07 23.1 0.1 13 48 100 131 87 141 0.83 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_9 - 1757 AAA_19 PF13245.1 76 2.1e-07 23.8 2.0 1 1 2.2e-08 6.5e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 5_1 - 230 AAA_19 PF13245.1 76 0.00012 15.0 0.0 1 1 7.5e-06 0.00022 14.1 0.0 10 39 33 61 27 71 0.83 # 94 # 783 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_34 - 123 AAA_19 PF13245.1 76 0.00078 12.3 0.0 1 1 4.3e-05 0.0013 11.7 0.0 13 37 91 115 82 122 0.78 # 32815 # 33183 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 877 AAA_10 PF12846.2 304 4.8e-49 160.5 0.0 1 1 2.2e-50 8.5e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_10 - 745 AAA_10 PF12846.2 304 1.7e-10 33.9 0.0 1 1 9.4e-11 3.6e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_6 - 145 AAA_10 PF12846.2 304 0.00017 14.1 0.0 1 1 7.2e-06 0.00028 13.5 0.0 2 33 98 129 97 135 0.92 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_29 - 188 Methyltransf_31 PF13847.1 152 3.9e-07 22.9 0.0 1 1 4.2e-09 4.8e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_9 - 1757 Viral_helicase1 PF01443.13 234 0.00044 12.9 0.0 1 2 0.00014 0.016 7.8 0.0 1 118 988 1121 988 1212 0.52 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_9 - 1757 Viral_helicase1 PF01443.13 234 0.00044 12.9 0.0 2 2 0.0066 0.76 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_10 - 745 TrwB_AAD_bind PF10412.4 386 4.3e-150 492.6 0.0 1 1 9.2e-152 5.4e-150 492.3 0.0 2 386 172 561 171 561 0.99 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_28 - 877 TrwB_AAD_bind PF10412.4 386 6.3e-07 21.4 0.2 1 2 4.8e-08 2.8e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 TrwB_AAD_bind PF10412.4 386 6.3e-07 21.4 0.2 2 2 0.054 3.1 -0.7 0.1 261 317 714 770 706 773 0.92 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_9 - 1757 AAA_11 PF13086.1 236 0.00024 13.8 0.0 1 1 2.1e-06 0.00024 13.8 0.0 2 75 969 1039 968 1059 0.81 # 5898 # 11168 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_10 - 745 T4SS-DNA_transf PF02534.9 469 8.6e-10 30.8 0.0 1 1 3.8e-11 2.2e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 11168 # 13402 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_28 - 877 T4SS-DNA_transf PF02534.9 469 0.00038 12.2 0.0 1 2 0.0047 0.27 2.8 0.0 105 182 534 605 471 624 0.82 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 T4SS-DNA_transf PF02534.9 469 0.00038 12.2 0.0 2 2 0.00023 0.013 7.1 0.0 319 378 712 770 663 772 0.91 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_29 - 188 TIGR00755 TIGR00755 256 4.2e-09 28.8 0.0 1 1 4.9e-11 5.7e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 17535 # 18098 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_17 - 228 MethyltransfD12 PF02086.10 260 0.00051 12.6 0.0 1 2 0.021 2.5 0.6 0.0 175 188 18 31 10 39 0.85 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 MethyltransfD12 PF02086.10 260 0.00051 12.6 0.0 2 2 4e-05 0.0046 9.5 0.0 20 46 163 189 148 197 0.78 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_6 - 145 ArgK PF03308.11 267 0.00012 14.0 0.0 1 1 1.6e-06 0.00019 13.4 0.0 27 60 95 128 80 136 0.86 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_28 - 877 Pox_A32 PF04665.7 241 0.00085 11.7 0.1 1 1 2.3e-05 0.0027 10.1 0.0 7 38 474 505 470 520 0.85 # 27646 # 30276 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 145 AAA_24 PF13479.1 213 0.00055 12.6 0.0 1 1 7.2e-06 0.00084 12.1 0.0 5 23 99 117 95 129 0.84 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 NACHT PF05729.7 166 0.00016 14.5 0.0 1 1 3.1e-06 0.00036 13.3 0.0 3 43 100 135 98 143 0.74 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_25 PF13481.1 194 5.4e-07 22.3 0.0 1 1 6.1e-09 7.1e-07 21.9 0.0 19 66 78 133 58 143 0.74 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_17 - 228 Methyltransf_15 PF09445.5 164 0.00021 14.0 0.0 1 2 0.0074 0.86 2.2 0.0 53 80 4 30 2 37 0.93 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_17 - 228 Methyltransf_15 PF09445.5 164 0.00021 14.0 0.0 2 2 4.2e-05 0.0049 9.5 0.0 3 31 166 194 164 209 0.86 # 11132 # 11815 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_6 - 145 AAA_28 PF13521.1 163 0.00035 13.7 0.2 1 2 0.052 6 -0.1 0.0 98 125 22 49 7 76 0.55 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_28 PF13521.1 163 0.00035 13.7 0.2 2 2 1.3e-05 0.0016 11.6 0.0 2 20 100 118 99 132 0.80 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_5 PF07728.9 139 3.1e-05 16.8 0.4 1 2 0.048 5.6 -0.2 0.0 92 126 14 49 4 61 0.52 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_6 - 145 AAA_5 PF07728.9 139 3.1e-05 16.8 0.4 2 2 1e-06 0.00012 14.9 0.1 1 17 99 115 99 135 0.88 # 3026 # 3460 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cc31b51a-35dd-4af0-b0ae-3b8a9933e7c1 # Target file: checkm_output/bins/pm1878/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1878/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cc31b51a-35dd-4af0-b0ae-3b8a9933e7c1 checkm_output/bins/pm1878/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:24 2020 # [ok]