# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_81 - 215 cobW PF02492.14 178 0.00043 12.5 0.8 1 1 1.2e-05 0.0011 11.2 0.8 3 46 3 48 1 130 0.69 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 Thymidylate_kin PF02223.12 186 0.0004 12.5 0.3 1 2 2.2e-05 0.002 10.2 0.0 6 29 11 34 9 47 0.91 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 Thymidylate_kin PF02223.12 186 0.0004 12.5 0.3 2 2 0.03 2.8 0.0 0.0 115 165 128 186 108 210 0.52 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 MipZ PF09140.6 261 1.7e-15 49.5 3.1 1 3 1.9e-11 1.7e-09 29.8 0.2 2 53 2 52 1 61 0.88 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 MipZ PF09140.6 261 1.7e-15 49.5 3.1 2 3 3.3e-08 3e-06 19.2 0.2 84 145 64 125 59 134 0.90 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 MipZ PF09140.6 261 1.7e-15 49.5 3.1 3 3 0.059 5.3 -1.3 0.0 219 254 182 207 172 210 0.56 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 YhjQ PF06564.7 244 0.0005 12.2 0.8 1 2 3.3e-05 0.003 9.7 0.2 6 36 5 35 1 39 0.87 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 YhjQ PF06564.7 244 0.0005 12.2 0.8 2 2 0.015 1.4 0.9 0.0 99 160 62 124 49 131 0.63 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 AAA_22 PF13401.1 131 2e-06 20.8 0.3 1 1 8.7e-08 7.9e-06 18.8 0.3 3 123 26 191 23 198 0.72 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 SRP54 PF00448.17 196 2.4e-11 36.2 0.3 1 1 5e-13 4.5e-11 35.3 0.3 6 98 4 93 1 98 0.79 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 AAA_15 PF13175.1 415 1.8e-09 29.8 9.2 1 2 3.4e-07 3.1e-05 15.9 7.8 6 90 11 95 6 136 0.70 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_15 PF13175.1 415 1.8e-09 29.8 9.2 2 2 1.9e-06 0.00017 13.4 0.0 366 414 152 196 143 197 0.86 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_17 PF13207.1 121 0.00027 14.6 0.6 1 1 1.7e-05 0.00077 13.1 0.5 3 18 31 46 31 50 0.89 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 AAA_17 PF13207.1 121 0.00035 14.2 0.1 1 1 1.1e-05 0.00048 13.8 0.1 9 76 11 85 2 183 0.69 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 AAA_21 PF13304.1 303 5.7e-19 61.9 6.0 1 2 1.9e-08 1.7e-06 20.9 3.5 1 62 29 88 29 109 0.69 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_21 PF13304.1 303 5.7e-19 61.9 6.0 2 2 4.5e-15 4.1e-13 42.6 1.0 183 303 74 198 57 198 0.65 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 MobB PF03205.9 140 0.00014 14.4 0.2 1 1 3e-06 0.00028 13.4 0.2 5 39 4 39 1 88 0.70 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_26 - 121 CTP_transf_2 PF01467.21 157 0.00094 12.0 0.0 1 1 1.2e-05 0.0011 11.8 0.0 32 64 7 38 2 93 0.70 # 16615 # 16977 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.499 1_81 - 215 ArsA_ATPase PF02374.10 305 1e-08 27.3 3.9 1 3 1.6e-08 1.5e-06 20.2 0.8 6 38 5 38 1 39 0.85 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 ArsA_ATPase PF02374.10 305 1e-08 27.3 3.9 2 3 0.0001 0.0093 7.7 0.0 96 135 46 87 35 89 0.83 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 ArsA_ATPase PF02374.10 305 1e-08 27.3 3.9 3 3 0.095 8.7 -2.0 0.0 73 108 133 167 111 187 0.54 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 SKI PF01202.17 158 0.00061 12.4 0.4 1 2 0.0009 0.082 5.5 0.2 2 16 11 25 10 31 0.89 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 SKI PF01202.17 158 0.00061 12.4 0.4 2 2 0.0013 0.12 5.0 0.0 87 150 31 95 24 109 0.72 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 Zeta_toxin PF06414.7 201 0.00011 14.1 0.0 1 1 2e-06 0.00018 13.4 0.0 20 109 4 94 1 103 0.79 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 SMC_N PF02463.14 220 5.4e-10 31.6 3.6 1 2 1.8e-05 0.0016 10.4 0.2 16 44 19 47 9 54 0.80 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 SMC_N PF02463.14 220 5.4e-10 31.6 3.6 2 2 3.4e-09 3.1e-07 22.6 0.3 123 210 121 205 60 209 0.70 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 VirC1 PF07015.6 231 2e-08 26.3 0.1 1 1 2.6e-10 2.4e-08 26.1 0.1 8 201 7 200 1 210 0.72 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 Fer4_NifH PF00142.13 273 7.5e-05 14.7 1.0 1 2 2.2e-06 0.0002 13.4 0.3 8 37 9 38 1 52 0.86 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 Fer4_NifH PF00142.13 273 7.5e-05 14.7 1.0 2 2 0.031 2.8 -0.3 0.0 189 210 67 88 42 149 0.59 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 Arch_ATPase PF01637.13 234 4.1e-05 16.1 0.9 1 1 8.5e-07 7.8e-05 15.2 0.9 18 71 25 85 19 191 0.57 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_16 PF13191.1 185 3.4e-06 19.9 0.1 1 1 1.3e-07 1.2e-05 18.1 0.1 20 163 23 198 14 208 0.53 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_23 PF13476.1 202 2.9e-05 17.2 7.7 1 1 5.6e-07 5.1e-05 16.4 7.7 10 78 17 79 11 201 0.56 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_18 PF13238.1 129 1.2e-06 21.7 0.5 1 1 1.5e-06 7e-05 15.9 0.5 2 68 31 109 31 206 0.55 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 AAA_18 PF13238.1 129 0.00041 13.5 0.2 1 1 1.9e-05 0.00089 12.4 0.1 8 42 11 45 9 135 0.74 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 CbiA PF01656.18 195 4.3e-18 58.2 0.0 1 1 6.5e-20 5.9e-18 57.7 0.0 2 148 4 138 3 182 0.72 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 SRPRB PF09439.5 181 0.00044 12.3 0.9 1 1 2.9e-05 0.0026 9.7 0.7 7 129 31 148 25 156 0.72 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_29 PF13555.1 62 9.6e-06 17.9 0.1 1 1 2.6e-07 2.4e-05 16.6 0.1 13 40 18 44 12 50 0.84 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA PF00004.24 132 0.00013 14.9 1.9 1 1 3.7e-05 0.0033 10.4 1.9 2 119 31 201 30 208 0.53 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 MMR_HSR1 PF01926.18 116 0.00045 13.0 1.0 1 1 1.2e-05 0.0011 11.7 1.0 3 39 31 67 30 202 0.76 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 DUF258 PF03193.11 161 9.7e-07 20.9 0.0 1 1 2e-08 1.9e-06 20.0 0.0 33 58 24 50 3 64 0.77 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 AAA_31 PF13614.1 157 1.1e-09 31.2 0.2 1 2 1e-09 9.5e-08 24.9 0.1 2 42 2 42 1 70 0.86 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 AAA_31 PF13614.1 157 1.1e-09 31.2 0.2 2 2 0.0022 0.2 4.3 0.0 106 134 67 95 60 109 0.82 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 AAA_33 PF13671.1 143 0.00012 14.7 0.1 1 2 8.2e-06 0.00074 12.2 0.1 9 85 11 94 4 175 0.73 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 AAA_33 PF13671.1 143 0.00012 14.7 0.1 2 2 0.028 2.5 0.7 0.0 75 96 145 166 129 207 0.77 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 KTI12 PF08433.5 270 0.00014 13.9 0.1 1 2 3.3e-06 0.0003 12.8 0.0 11 49 11 49 1 64 0.86 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 KTI12 PF08433.5 270 0.00014 13.9 0.1 2 2 0.079 7.2 -1.6 0.0 222 222 113 113 58 163 0.50 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 ABC_tran PF00005.22 137 2.6e-27 88.6 0.2 1 1 7.2e-29 6.5e-27 87.3 0.0 1 137 17 163 17 163 0.93 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 AAA_19 PF13245.1 76 0.00018 14.0 0.5 1 1 1.1e-05 0.00049 12.7 0.4 20 56 11 45 3 64 0.81 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 AAA_19 PF13245.1 76 0.00097 11.7 0.0 1 1 5.5e-05 0.0025 10.4 0.0 10 32 27 48 20 52 0.83 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_10 PF12846.2 304 3e-05 16.3 2.4 1 2 6.2e-05 0.0056 8.8 0.3 5 21 31 47 28 54 0.87 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 AAA_10 PF12846.2 304 3e-05 16.3 2.4 2 2 0.00015 0.014 7.5 0.1 150 277 66 205 53 209 0.81 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_51 - 210 SbcCD_C PF13558.1 90 0.00029 13.6 0.0 1 1 1.9e-05 0.0017 11.1 0.0 27 89 129 178 121 179 0.83 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 DUF2075 PF09848.4 352 7.4e-06 17.8 0.1 1 1 9.3e-08 8.4e-06 17.7 0.1 5 95 4 90 1 137 0.75 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_81 - 215 AAA_25 PF13481.1 194 3e-05 16.3 0.6 1 1 1.7e-06 7.8e-05 14.9 0.3 41 149 9 85 2 109 0.65 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_51 - 210 AAA_25 PF13481.1 194 0.00021 13.5 0.0 1 1 1e-05 0.00046 12.4 0.0 30 50 24 44 6 61 0.85 # 38346 # 38975 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_81 - 215 APS_kinase PF01583.15 157 2.5e-06 20.0 0.1 1 1 5.8e-08 5.3e-06 18.9 0.1 11 43 10 42 2 53 0.88 # 66101 # 66745 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/89195fdf-cf48-4f9c-8824-e36c49eaf2d4 # Target file: checkm_output/bins/pm1877/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1877/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/89195fdf-cf48-4f9c-8824-e36c49eaf2d4 checkm_output/bins/pm1877/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:23 2020 # [ok]