# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 221 MipZ PF09140.6 261 5.7e-13 40.3 1.1 1 1 5.1e-12 2.3e-10 31.7 1.1 3 127 5 108 3 132 0.78 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 YhjQ PF06564.7 244 8.7e-05 13.7 0.1 1 2 0.00016 0.007 7.5 0.1 10 39 11 40 3 52 0.85 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 YhjQ PF06564.7 244 8.7e-05 13.7 0.1 2 2 0.0013 0.058 4.4 0.0 102 150 66 112 44 149 0.84 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 ATP_bind_1 PF03029.12 238 0.00024 12.4 0.3 1 1 0.00012 0.0056 8.0 0.3 6 42 13 49 11 117 0.75 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 SRP54 PF00448.17 196 9.7e-07 20.1 1.3 1 1 4.6e-08 2.1e-06 19.1 0.3 11 98 13 94 3 134 0.78 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 AAA_17 PF13207.1 121 0.00029 13.5 0.0 1 1 1.2e-05 0.00053 12.6 0.0 9 98 13 110 12 215 0.77 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_18 - 246 Adenylsucc_synt PF00709.16 421 0.0024 8.3 5.4 1 2 3.9e-05 0.0018 8.7 0.1 165 229 49 114 22 117 0.78 # 14133 # 14870 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_18 - 246 Adenylsucc_synt PF00709.16 421 0.0024 8.3 5.4 2 2 0.0072 0.33 1.2 1.5 143 180 187 225 143 241 0.57 # 14133 # 14870 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_38 - 221 MobB PF03205.9 140 1.3e-06 19.9 0.4 1 2 8.1e-06 0.00036 12.0 0.1 10 38 13 41 5 51 0.87 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 MobB PF03205.9 140 1.3e-06 19.9 0.4 2 2 0.0006 0.027 6.0 0.0 44 76 85 120 70 133 0.80 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 ArsA_ATPase PF02374.10 305 1e-07 23.0 0.1 1 1 3.1e-09 1.4e-07 22.6 0.1 4 39 6 41 3 86 0.89 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_12 - 346 T2SE PF00437.15 272 1.3e-49 160.3 0.0 1 1 3.5e-51 1.6e-49 160.0 0.0 7 242 21 283 16 317 0.89 # 8683 # 9720 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.386 1_38 - 221 AAA_26 PF13500.1 199 0.00048 11.5 1.7 1 2 0.00012 0.0056 8.0 0.4 2 36 4 38 3 45 0.90 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 AAA_26 PF13500.1 199 0.00048 11.5 1.7 2 2 0.0094 0.43 1.9 0.0 128 128 108 108 49 178 0.60 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 VirC1 PF07015.6 231 3.5e-08 24.5 0.3 1 2 2e-09 9e-08 23.2 0.1 6 55 7 56 3 61 0.92 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 VirC1 PF07015.6 231 3.5e-08 24.5 0.3 2 2 0.087 3.9 -1.8 0.0 121 154 117 150 80 165 0.66 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 Fer4_NifH PF00142.13 273 2.3e-07 22.0 0.6 1 1 7.6e-09 3.4e-07 21.4 0.5 8 43 11 46 6 92 0.87 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 AAA_18 PF13238.1 129 8.3e-06 17.9 0.0 1 1 3e-07 1.3e-05 17.3 0.0 8 94 13 103 12 113 0.80 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 CbiA PF01656.18 195 2.2e-19 61.4 0.2 1 1 9.1e-21 4.1e-19 60.5 0.2 3 168 7 156 5 177 0.76 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_11 - 612 TraG-D_C PF12696.2 128 2.9e-29 93.3 0.1 1 1 1.5e-30 6.6e-29 92.2 0.0 2 127 416 534 415 535 0.87 # 6843 # 8678 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_38 - 221 AAA_31 PF13614.1 157 1e-05 17.3 0.2 1 2 1.2e-05 0.00054 11.7 0.1 3 41 5 43 4 57 0.87 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 AAA_31 PF13614.1 157 1e-05 17.3 0.2 2 2 0.0041 0.18 3.5 0.0 111 151 73 112 63 114 0.85 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_12 - 346 AAA_33 PF13671.1 143 0.00051 11.7 0.0 1 2 0.0034 0.15 3.7 0.0 7 77 98 172 95 174 0.72 # 8683 # 9720 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.386 1_12 - 346 AAA_33 PF13671.1 143 0.00051 11.7 0.0 2 2 0.00032 0.014 7.0 0.0 3 21 169 187 168 227 0.82 # 8683 # 9720 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.386 1_19 - 920 AAA_10 PF12846.2 304 1.4e-33 108.3 0.0 1 1 6.1e-35 2.8e-33 107.4 0.0 3 297 539 828 538 834 0.86 # 14872 # 17631 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_12 - 346 DEAD PF00270.24 169 7e-05 14.1 0.1 1 1 4.8e-06 0.00022 12.5 0.1 6 32 156 183 152 230 0.78 # 8683 # 9720 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.386 1_11 - 612 TrwB_AAD_bind PF10412.4 386 5e-23 73.0 0.0 1 1 1.6e-24 7.2e-23 72.5 0.0 128 380 294 548 281 552 0.83 # 6843 # 8678 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_11 - 612 T4SS-DNA_transf PF02534.9 469 3e-161 528.8 0.0 1 1 7.8e-163 3.5e-161 528.6 0.0 2 468 102 581 101 582 0.98 # 6843 # 8678 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_38 - 221 ArgK PF03308.11 267 0.00023 11.7 0.1 1 2 4.7e-05 0.0021 8.6 0.1 38 66 12 40 4 46 0.89 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 ArgK PF03308.11 267 0.00023 11.7 0.1 2 2 0.012 0.53 0.7 0.0 133 199 67 133 61 151 0.56 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_38 - 221 GTP_EFTU PF00009.22 188 5.5e-09 27.5 0.1 1 1 1.5e-10 6.5e-09 27.2 0.1 15 115 15 123 12 209 0.73 # 27897 # 28559 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_23 - 164 TIGR00922 TIGR00922 172 1.8e-08 25.9 0.0 1 1 1.5e-09 6.6e-08 24.0 0.0 55 104 51 100 3 114 0.88 # 18798 # 19289 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b8fbbb90-b56b-49a4-8b35-eb3776fd57ee # Target file: checkm_output/bins/pm1867/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1867/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b8fbbb90-b56b-49a4-8b35-eb3776fd57ee checkm_output/bins/pm1867/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:15 2020 # [ok]