# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 344 IstB_IS21 PF01695.12 178 0.00032 12.1 0.0 1 1 1.3e-05 0.00066 11.0 0.0 45 66 161 182 140 186 0.92 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_33 - 221 MipZ PF09140.6 261 3.7e-10 31.2 1.8 1 1 2.5e-09 1.2e-07 22.9 1.3 2 130 4 111 3 132 0.75 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 AAA_22 PF13401.1 131 0.00034 12.7 0.0 1 1 1.2e-05 0.0006 11.9 0.0 5 29 164 188 160 237 0.71 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 ATP_bind_1 PF03029.12 238 0.00023 12.7 0.0 1 1 1.4e-05 0.00034 12.1 0.0 2 23 169 190 168 206 0.87 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_33 - 221 ATP_bind_1 PF03029.12 238 0.00041 11.8 0.2 1 1 0.0003 0.0074 7.7 0.2 6 40 13 47 10 115 0.83 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 SRP54 PF00448.17 196 0.00025 12.4 0.1 1 1 1.1e-05 0.00053 11.4 0.1 10 98 12 94 3 134 0.78 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 AAA_17 PF13207.1 121 2.2e-05 17.2 0.0 1 1 9.3e-07 4.7e-05 16.2 0.0 2 44 166 208 165 248 0.80 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_33 - 221 MobB PF03205.9 140 5.2e-06 18.1 0.7 1 2 2e-05 0.00051 11.7 0.3 2 37 4 40 3 52 0.86 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 MobB PF03205.9 140 5.2e-06 18.1 0.7 2 2 0.0032 0.079 4.6 0.0 44 75 85 119 72 133 0.81 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 MobB PF03205.9 140 6.6e-05 14.6 0.0 1 1 4.7e-06 0.00012 13.8 0.0 2 40 165 202 164 223 0.87 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_33 - 221 ArsA_ATPase PF02374.10 305 3.4e-09 28.0 0.1 1 1 1.2e-10 6.1e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 T2SE PF00437.15 272 7.5e-53 171.0 0.0 1 1 1.9e-54 9.5e-53 170.7 0.0 11 266 24 311 15 316 0.88 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 Zeta_toxin PF06414.7 201 1.1e-05 16.5 0.0 1 1 3.5e-07 1.8e-05 15.8 0.0 10 59 156 208 148 231 0.83 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_33 - 221 VirC1 PF07015.6 231 7.2e-09 26.9 0.0 1 1 2.6e-10 1.3e-08 26.1 0.0 3 55 4 56 2 61 0.92 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 Fer4_NifH PF00142.13 273 7.6e-07 20.4 0.2 1 1 3.7e-08 1.9e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 AAA_16 PF13191.1 185 0.0006 11.7 0.0 1 1 1.7e-05 0.00085 11.3 0.0 22 54 161 194 148 290 0.78 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 AAA_23 PF13476.1 202 0.00017 13.9 0.1 1 1 6.3e-06 0.00031 13.0 0.1 21 38 165 182 152 185 0.88 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_33 - 221 CbiA PF01656.18 195 2e-15 48.6 0.6 1 1 1.1e-16 5.4e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 KaiC PF06745.8 227 0.00049 11.1 0.1 1 1 1.7e-05 0.00087 10.3 0.1 8 37 152 181 147 187 0.88 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 AAA_29 PF13555.1 62 5e-05 14.8 0.0 1 1 2.1e-06 0.00011 13.7 0.0 20 43 160 183 134 186 0.82 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 DUF258 PF03193.11 161 0.00012 13.2 0.0 1 1 3.8e-06 0.00019 12.6 0.0 31 59 158 187 143 221 0.82 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_12 - 612 TraG-D_C PF12696.2 128 1.7e-27 87.7 0.0 1 1 5.9e-29 2.9e-27 87.0 0.0 2 127 416 534 415 535 0.87 # 10966 # 12801 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_33 - 221 AAA_31 PF13614.1 157 3.9e-07 22.0 0.0 1 2 8.5e-07 4.3e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 AAA_31 PF13614.1 157 3.9e-07 22.0 0.0 2 2 0.0021 0.11 4.4 0.0 111 151 73 112 63 115 0.83 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 AAA_33 PF13671.1 143 8.1e-06 17.7 0.0 1 2 0.064 3.2 -0.4 0.0 7 39 96 127 93 163 0.79 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 AAA_33 PF13671.1 143 8.1e-06 17.7 0.0 2 2 7.8e-07 3.9e-05 15.5 0.0 2 24 166 188 165 257 0.70 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 ABC_tran PF00005.22 137 2.7e-05 16.4 0.0 1 1 1.5e-06 7.7e-05 15.0 0.0 7 32 159 184 155 223 0.85 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_4 - 918 AAA_10 PF12846.2 304 9.9e-36 115.5 0.0 1 1 3.4e-37 1.7e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 1943 # 4696 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 344 DEAD PF00270.24 169 0.00011 13.6 0.0 1 1 3.8e-06 0.00019 12.9 0.0 6 33 154 182 151 246 0.77 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_12 - 612 TrwB_AAD_bind PF10412.4 386 3.7e-21 67.0 0.0 1 1 1.2e-22 5.9e-21 66.3 0.0 165 380 331 548 306 552 0.85 # 10966 # 12801 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_12 - 612 T4SS-DNA_transf PF02534.9 469 3.5e-145 476.0 0.0 1 1 8.7e-147 4.3e-145 475.7 0.0 2 461 102 571 101 578 0.98 # 10966 # 12801 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_33 - 221 ArgK PF03308.11 267 0.00027 11.6 0.1 1 2 1.6e-05 0.0008 10.1 0.1 37 66 11 40 3 45 0.88 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ArgK PF03308.11 267 0.00027 11.6 0.1 2 2 0.071 3.5 -1.8 0.0 154 174 88 107 63 144 0.54 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 GTP_EFTU PF00009.22 188 1.2e-07 23.3 0.1 1 1 2.6e-09 1.3e-07 23.1 0.1 15 139 15 153 6 211 0.72 # 28971 # 29633 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 344 UPF0079 PF02367.12 123 0.00023 12.8 0.0 1 1 8.9e-06 0.00045 11.8 0.0 8 38 156 186 151 195 0.83 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_11 - 344 AAA_25 PF13481.1 194 0.00015 13.1 0.0 1 1 4.3e-06 0.00021 12.6 0.0 22 51 152 181 137 244 0.89 # 9932 # 10963 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4c4eca6f-ad5e-4c61-ac02-9b4cf4732982 # Target file: checkm_output/bins/pm1861/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1861/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4c4eca6f-ad5e-4c61-ac02-9b4cf4732982 checkm_output/bins/pm1861/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:13 2020 # [ok]