# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_15 - 259 UPF0020 PF01170.13 180 3.4e-06 20.2 0.0 1 2 8.4e-05 0.0042 10.1 0.0 90 119 30 58 12 97 0.76 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_15 - 259 UPF0020 PF01170.13 180 3.4e-06 20.2 0.0 2 2 0.00033 0.016 8.2 0.0 28 51 195 218 190 252 0.75 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_3 - 188 UPF0020 PF01170.13 180 1.9e-05 17.8 0.0 1 1 2.2e-06 0.00011 15.3 0.0 19 54 41 78 39 138 0.74 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_47 - 552 UPF0020 PF01170.13 180 0.00023 14.2 0.1 1 2 0.00026 0.013 8.5 0.1 31 45 85 99 77 105 0.88 # 43004 # 44659 # -1 # ID=2_47;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 2_47 - 552 UPF0020 PF01170.13 180 0.00023 14.2 0.1 2 2 0.012 0.59 3.1 0.0 106 125 168 187 148 195 0.79 # 43004 # 44659 # -1 # ID=2_47;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 2_3 - 188 RrnaAD PF00398.15 262 3.8e-07 22.8 0.0 1 1 3.4e-09 5.1e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_23 - 402 MipZ PF09140.6 261 1.9e-06 20.6 0.0 1 2 0.0017 0.26 3.8 0.0 3 50 111 163 109 193 0.72 # 15786 # 16991 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_23 - 402 MipZ PF09140.6 261 1.9e-06 20.6 0.0 2 2 8.7e-07 0.00013 14.6 0.0 87 136 233 282 220 296 0.87 # 15786 # 16991 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_80 - 171 SSB PF00436.20 104 1.1e-42 137.7 0.3 1 1 8.7e-45 1.3e-42 137.4 0.3 1 103 6 112 6 113 0.97 # 62968 # 63480 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 2_3 - 188 Methyltransf_18 PF12847.2 112 1.5e-07 25.5 0.0 1 1 1.6e-09 2.4e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_29 - 1754 UvrD_C_2 PF13538.1 104 2.3e-07 24.5 0.3 1 1 1.8e-08 1.4e-06 21.9 0.1 3 102 1340 1443 1333 1445 0.75 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 2_59 - 327 UvrD_C_2 PF13538.1 104 0.00048 13.8 0.0 1 1 4.4e-05 0.0033 11.1 0.0 70 103 137 171 83 171 0.86 # 55637 # 56617 # 1 # ID=2_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 2_45 - 1086 DEAD_2 PF06733.10 174 0.0012 11.7 0.2 1 1 2.2e-05 0.0033 10.3 0.0 122 156 412 444 402 454 0.86 # 38433 # 41690 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_49 - 880 DUF87 PF01935.12 229 6.9e-06 19.5 0.0 1 2 0.056 8.4 -0.4 0.2 113 171 312 362 304 396 0.60 # 41902 # 44541 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_49 - 880 DUF87 PF01935.12 229 6.9e-06 19.5 0.0 2 2 3e-07 4.6e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 41902 # 44541 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_29 - 1754 AAA_22 PF13401.1 131 0.00011 15.9 0.0 1 2 0.0057 0.86 3.2 0.0 89 121 505 536 468 538 0.72 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_29 - 1754 AAA_22 PF13401.1 131 0.00011 15.9 0.0 2 2 0.00011 0.016 8.8 0.0 3 29 986 1012 983 1065 0.79 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 2_15 - 259 N6_N4_Mtase PF01555.13 231 1.3e-32 106.6 0.0 1 2 3.8e-13 5.7e-11 35.8 0.0 1 113 46 155 46 169 0.85 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_15 - 259 N6_N4_Mtase PF01555.13 231 1.3e-32 106.6 0.0 2 2 2.4e-23 3.6e-21 69.1 0.0 170 227 174 231 160 235 0.92 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 1_30 - 771 AAA_16 PF13191.1 185 4.5e-06 20.2 0.0 1 1 1.4e-07 2.1e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 24930 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 2_23 - 402 CbiA PF01656.18 195 5.8e-19 61.7 0.0 1 1 7.1e-21 1.1e-18 60.8 0.0 1 142 111 292 111 327 0.76 # 15786 # 16991 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_47 - 552 N6_Mtase PF02384.11 311 1.3e-52 172.2 0.0 1 1 3.7e-54 1.9e-52 171.7 0.0 5 275 31 336 28 348 0.84 # 43004 # 44659 # -1 # ID=2_47;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_67 - 278 N6_Mtase PF02384.11 311 5.3e-12 38.9 0.0 1 1 1.7e-13 8.4e-12 38.2 0.0 25 117 139 237 130 250 0.85 # 55428 # 56261 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 2_3 - 188 N6_Mtase PF02384.11 311 0.00015 14.4 0.0 1 2 7.9e-05 0.004 9.7 0.0 28 71 32 75 21 93 0.82 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_3 - 188 N6_Mtase PF02384.11 311 0.00015 14.4 0.0 2 2 0.017 0.85 2.0 0.0 124 138 111 125 95 133 0.81 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_30 - 771 TraG-D_C PF12696.2 128 1.4e-19 63.7 0.0 1 1 2.2e-21 3.3e-19 62.5 0.0 1 127 419 541 419 542 0.88 # 24930 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 2_23 - 402 AAA_31 PF13614.1 157 0.0001 15.8 0.0 1 2 0.055 8.3 -0.2 0.0 7 58 115 171 109 206 0.64 # 15786 # 16991 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_23 - 402 AAA_31 PF13614.1 157 0.0001 15.8 0.0 2 2 5.5e-06 0.00082 12.8 0.0 108 147 235 273 230 279 0.86 # 15786 # 16991 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_3 - 188 Methyltransf_26 PF13659.1 117 2.8e-13 43.5 0.1 1 1 1.2e-14 4.4e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_15 - 259 Methyltransf_26 PF13659.1 117 3.3e-11 36.8 0.2 1 2 9e-07 3.4e-05 17.4 0.0 54 113 29 95 5 100 0.73 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_15 - 259 Methyltransf_26 PF13659.1 117 3.3e-11 36.8 0.2 2 2 9.3e-07 3.5e-05 17.3 0.1 4 44 199 238 196 253 0.80 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_47 - 552 Methyltransf_26 PF13659.1 117 1.4e-08 28.3 0.0 1 1 7.9e-10 3e-08 27.2 0.0 4 88 86 186 84 267 0.75 # 43004 # 44659 # -1 # ID=2_47;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_67 - 278 Methyltransf_26 PF13659.1 117 0.00013 15.5 0.1 1 1 7.2e-06 0.00027 14.5 0.1 3 66 171 239 170 271 0.81 # 55428 # 56261 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 1_29 - 1754 AAA_30 PF13604.1 196 3.3e-45 147.6 7.6 1 2 4.7e-07 7.1e-05 15.9 1.0 9 126 424 536 422 561 0.86 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_29 - 1754 AAA_30 PF13604.1 196 3.3e-45 147.6 7.6 2 2 4.9e-43 7.4e-41 133.3 0.8 2 186 971 1158 970 1162 0.94 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_49 - 880 FtsK_SpoIIIE PF01580.13 205 0.00017 14.6 0.0 1 1 2.7e-06 0.00041 13.3 0.0 39 63 480 506 466 508 0.85 # 41902 # 44541 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 2_3 - 188 MTS PF05175.9 170 1.6e-09 30.8 0.0 1 1 1.5e-11 2.3e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_15 - 259 Cons_hypoth95 PF03602.10 183 5.9e-06 19.2 0.0 1 2 0.00014 0.021 7.7 0.0 113 170 44 103 32 111 0.74 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_15 - 259 Cons_hypoth95 PF03602.10 183 5.9e-06 19.2 0.0 2 2 3.7e-05 0.0056 9.5 0.0 20 60 174 213 167 250 0.73 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 1_29 - 1754 AAA_19 PF13245.1 76 6.1e-07 22.7 0.8 1 1 4e-09 6.1e-07 22.7 0.8 8 74 984 1047 976 1050 0.71 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 2_3 - 188 Methyltransf_2 PF00891.13 242 0.0018 11.0 0.0 1 1 1.7e-05 0.0026 10.4 0.0 111 159 60 110 40 119 0.83 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_49 - 880 AAA_10 PF12846.2 304 1.2e-45 149.7 0.0 1 1 2.5e-47 1.9e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 41902 # 44541 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_30 - 771 AAA_10 PF12846.2 304 2.4e-09 30.5 0.0 1 1 9.1e-09 6.9e-07 22.4 0.0 3 296 187 494 186 499 0.63 # 24930 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 2_45 - 1086 ResIII PF04851.10 184 2.1e-14 47.3 1.7 1 2 4.8e-16 7.3e-14 45.5 0.1 3 183 295 498 293 499 0.78 # 38433 # 41690 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_45 - 1086 ResIII PF04851.10 184 2.1e-14 47.3 1.7 2 2 0.034 5.1 0.3 0.1 138 161 655 678 587 708 0.71 # 38433 # 41690 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_30 - 771 TrwB_AAD_bind PF10412.4 386 1.6e-148 487.9 0.0 1 1 2.6e-150 2e-148 487.5 0.0 2 386 172 561 171 561 0.99 # 24930 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_49 - 880 TrwB_AAD_bind PF10412.4 386 2.3e-05 16.6 0.2 1 1 8e-07 6.1e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 41902 # 44541 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_29 - 1754 AAA_11 PF13086.1 236 2.3e-05 17.5 2.7 1 2 3.8e-07 5.7e-05 16.2 0.0 2 72 971 1038 970 1065 0.83 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_29 - 1754 AAA_11 PF13086.1 236 2.3e-05 17.5 2.7 2 2 0.033 5 0.0 0.0 3 35 1182 1213 1180 1339 0.70 # 19669 # 24930 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_30 - 771 T4SS-DNA_transf PF02534.9 469 2.9e-08 26.1 0.0 1 2 0.08 12 -2.3 0.0 130 199 262 330 253 360 0.69 # 24930 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_30 - 771 T4SS-DNA_transf PF02534.9 469 2.9e-08 26.1 0.0 2 2 4.6e-10 6.9e-08 24.9 0.0 274 392 392 506 361 559 0.74 # 24930 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 2_3 - 188 TIGR00755 TIGR00755 256 9.6e-08 24.7 0.0 1 1 9e-10 1.4e-07 24.2 0.0 8 105 29 123 26 128 0.90 # 343 # 906 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_49 - 880 Pox_A32 PF04665.7 241 0.00011 15.0 0.0 1 1 1.5e-06 0.00023 14.0 0.0 6 40 474 508 470 523 0.82 # 41902 # 44541 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 2_45 - 1086 UvrD-helicase PF00580.16 315 7.4e-05 15.6 1.3 1 1 1.2e-06 0.00019 14.3 0.2 20 271 324 782 308 794 0.68 # 38433 # 41690 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_15 - 259 Methyltransf_15 PF09445.5 164 0.00074 12.6 0.0 1 2 0.011 1.7 1.6 0.0 50 80 26 55 19 64 0.86 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_15 - 259 Methyltransf_15 PF09445.5 164 0.00074 12.6 0.0 2 2 8.1e-05 0.012 8.6 0.0 3 30 198 225 196 238 0.90 # 7808 # 8584 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.606 2_45 - 1086 SNF2_N PF00176.18 299 0.00036 12.9 0.2 1 1 5.3e-06 0.00081 11.7 0.2 1 159 299 459 299 469 0.71 # 38433 # 41690 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3bfe3b5a-e8c2-4c40-aff5-e83fa80fc3d6 # Target file: checkm_output/bins/pm186/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm186/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3bfe3b5a-e8c2-4c40-aff5-e83fa80fc3d6 checkm_output/bins/pm186/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:12 2020 # [ok]