# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_43 - 221 MipZ PF09140.6 261 6.6e-11 33.6 2.3 1 1 4.6e-10 2.3e-08 25.3 1.7 2 130 4 111 3 132 0.76 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 ATP_bind_1 PF03029.12 238 0.00021 12.8 0.2 1 1 0.00012 0.006 8.0 0.2 6 40 13 47 9 113 0.76 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 SRP54 PF00448.17 196 5e-05 14.7 0.1 1 1 2.1e-06 0.00011 13.6 0.1 10 98 12 94 3 136 0.80 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_17 - 252 Adenylsucc_synt PF00709.16 421 0.00074 10.1 4.2 1 2 2e-05 0.001 9.6 0.2 159 229 51 122 29 126 0.76 # 11413 # 12168 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_17 - 252 Adenylsucc_synt PF00709.16 421 0.00074 10.1 4.2 2 2 0.005 0.25 1.8 0.6 142 180 194 233 148 247 0.66 # 11413 # 12168 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_43 - 221 MobB PF03205.9 140 4.4e-06 18.4 0.9 1 2 1.1e-05 0.00053 11.6 0.3 2 37 4 40 3 51 0.86 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 MobB PF03205.9 140 4.4e-06 18.4 0.9 2 2 0.0011 0.056 5.1 0.0 44 75 85 119 69 133 0.79 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 ArsA_ATPase PF02374.10 305 3.7e-09 27.9 0.4 1 1 1.5e-10 7.4e-09 26.9 0.3 4 43 6 45 3 60 0.91 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_24 - 345 T2SE PF00437.15 272 2.3e-46 149.8 0.0 1 1 5.5e-48 2.8e-46 149.5 0.0 12 246 26 286 15 317 0.88 # 16823 # 17857 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_24 - 345 Zeta_toxin PF06414.7 201 0.0002 12.4 0.0 1 1 8.3e-06 0.00041 11.4 0.0 17 59 166 209 154 235 0.76 # 16823 # 17857 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_43 - 221 VirC1 PF07015.6 231 7.3e-09 26.9 0.0 1 1 2.6e-10 1.3e-08 26.1 0.0 3 55 4 56 2 61 0.92 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 Fer4_NifH PF00142.13 273 8.4e-07 20.3 0.2 1 1 3.7e-08 1.9e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_17 - 252 AAA_13 PF13166.1 712 4.5e-05 13.9 8.3 1 2 1.1e-06 5.4e-05 13.6 0.0 315 409 28 122 6 136 0.90 # 11413 # 12168 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_17 - 252 AAA_13 PF13166.1 712 4.5e-05 13.9 8.3 2 2 0.01 0.51 0.5 6.2 87 176 161 233 149 248 0.31 # 11413 # 12168 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_43 - 221 CbiA PF01656.18 195 5.2e-16 50.5 0.6 1 1 2.8e-17 1.4e-15 49.1 0.6 2 167 6 155 5 180 0.73 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_2 - 172 B5 PF03484.10 70 6.1e-05 14.8 0.0 1 2 0.032 1.6 0.6 0.0 12 38 7 35 1 50 0.76 # 1715 # 2230 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_2 - 172 B5 PF03484.10 70 6.1e-05 14.8 0.0 2 2 1.1e-05 0.00056 11.7 0.0 16 59 94 144 77 155 0.67 # 1715 # 2230 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_25 - 612 TraG-D_C PF12696.2 128 5e-29 92.7 0.0 1 1 1.7e-30 8.5e-29 92.0 0.0 2 127 416 534 415 535 0.86 # 17860 # 19695 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.431 1_22 - 404 DLIC PF05783.6 472 0.0047 7.5 5.5 1 1 0.00018 0.0088 6.6 5.5 353 458 89 200 76 207 0.69 # 15416 # 16627 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_43 - 221 AAA_31 PF13614.1 157 1.4e-07 23.5 0.0 1 2 8.5e-07 4.3e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 AAA_31 PF13614.1 157 1.4e-07 23.5 0.0 2 2 0.00075 0.038 5.9 0.0 111 151 73 112 63 115 0.83 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_42 - 217 RuvB_N PF05496.7 234 0.00018 12.5 0.2 1 1 6.8e-06 0.00034 11.6 0.0 78 119 46 86 35 101 0.90 # 29781 # 30431 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_16 - 918 AAA_10 PF12846.2 304 1.8e-33 108.1 0.0 1 1 6.7e-35 3.4e-33 107.2 0.0 3 297 539 828 538 834 0.93 # 8650 # 11403 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.457 1_24 - 345 DEAD PF00270.24 169 0.00027 12.4 0.0 1 1 1e-05 0.00052 11.4 0.0 8 39 157 188 153 241 0.78 # 16823 # 17857 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_25 - 612 TrwB_AAD_bind PF10412.4 386 6.2e-23 72.8 0.0 1 1 1.9e-24 9.7e-23 72.2 0.0 165 380 331 548 297 552 0.86 # 17860 # 19695 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.431 1_25 - 612 T4SS-DNA_transf PF02534.9 469 2.6e-148 486.3 0.0 1 1 6.4e-150 3.2e-148 486.0 0.0 2 462 102 572 101 580 0.98 # 17860 # 19695 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.431 1_43 - 221 ArgK PF03308.11 267 0.00022 11.9 0.2 1 2 1.5e-05 0.00077 10.2 0.1 37 66 11 40 3 46 0.88 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 ArgK PF03308.11 267 0.00022 11.9 0.2 2 2 0.041 2.1 -1.1 0.0 123 148 81 107 57 142 0.60 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_43 - 221 GTP_EFTU PF00009.22 188 1.7e-07 22.8 0.1 1 1 3.7e-09 1.9e-07 22.6 0.1 15 139 15 153 6 211 0.71 # 30812 # 31474 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_29 - 157 Nup35_RRM PF05172.8 101 0.00052 11.7 0.0 1 1 1.6e-05 0.00078 11.2 0.0 28 73 87 130 77 137 0.86 # 20895 # 21365 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_12 - 170 TIGR00922 TIGR00922 172 2.9e-08 25.3 0.0 1 1 1.3e-09 6.4e-08 24.2 0.0 55 110 51 106 28 144 0.84 # 6974 # 7483 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_24 - 345 AAA_25 PF13481.1 194 6.8e-05 14.2 0.0 1 1 2e-06 0.0001 13.7 0.0 15 52 146 183 132 226 0.84 # 16823 # 17857 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1f44cec0-6eb0-4713-aa76-269eb8f2c197 # Target file: checkm_output/bins/pm1858/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1858/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1f44cec0-6eb0-4713-aa76-269eb8f2c197 checkm_output/bins/pm1858/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:09 2020 # [ok]