# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 332 cobW PF02492.14 178 1.2e-06 20.1 0.0 1 1 4.1e-08 2.2e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 Parvo_NS1 PF01057.12 272 0.00046 11.1 0.0 1 1 1.4e-05 0.00077 10.4 0.0 104 138 148 182 140 188 0.90 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 Torsin PF06309.6 127 1.1e-05 17.3 0.0 1 1 6.1e-07 3.3e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 IstB_IS21 PF01695.12 178 1.5e-05 16.5 0.0 1 1 4.5e-07 2.4e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 UvrD_C_2 PF13538.1 104 1.4e-16 52.6 0.1 1 1 1e-17 5.6e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 AAA_2 PF07724.9 171 3.1e-06 19.2 0.0 1 1 1e-07 5.5e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 DUF87 PF01935.12 229 6e-08 24.8 0.0 1 1 3.4e-09 9.2e-08 24.2 0.0 10 68 116 170 109 262 0.85 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 DUF87 PF01935.12 229 1.4e-06 20.3 0.0 1 1 9.7e-08 2.6e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_22 PF13401.1 131 1.5e-07 23.7 0.0 1 1 1.8e-08 3.3e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 867 AAA_22 PF13401.1 131 5.8e-05 15.3 0.0 1 1 7.5e-05 0.0014 10.9 0.0 5 28 492 515 489 549 0.85 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_20 - 1077 AAA_22 PF13401.1 131 0.00035 12.8 0.2 1 1 0.00022 0.004 9.4 0.2 4 125 494 598 490 603 0.81 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_50 - 478 DNA_methylase PF00145.12 335 1.2e-79 259.8 0.0 1 1 4.4e-81 2.4e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 38713 # 40146 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 1_32 - 332 AAA_17 PF13207.1 121 0.00022 14.1 0.1 1 1 2.8e-05 0.00051 12.9 0.1 2 40 161 195 160 229 0.75 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 AAA_17 PF13207.1 121 0.0003 13.7 0.1 1 1 6.7e-05 0.0012 11.7 0.0 4 42 131 191 129 260 0.58 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_39 - 867 AAA_17 PF13207.1 121 0.00051 12.9 4.9 1 1 0.00023 0.0041 10.0 0.0 3 21 495 513 494 565 0.80 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_32 - 332 MobB PF03205.9 140 4.8e-06 18.4 1.9 1 1 1.5e-07 8.1e-06 17.6 0.3 2 39 160 196 159 201 0.83 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 PhoH PF02562.11 205 1.8e-09 29.2 4.8 1 2 9.6e-07 2.6e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 PhoH PF02562.11 205 1.8e-09 29.2 4.8 2 2 3e-06 8.2e-05 13.9 0.1 120 162 562 605 553 635 0.82 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 PhoH PF02562.11 205 0.00017 12.9 0.0 1 1 1.1e-05 0.0003 12.1 0.0 14 45 153 184 143 210 0.79 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_7 PF12775.2 272 5.3e-05 14.4 0.0 1 1 2.3e-06 0.00013 13.2 0.0 25 64 150 189 139 209 0.86 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 T2SE PF00437.15 272 1.7e-52 170.0 0.1 1 1 7.4e-54 2e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 T2SE PF00437.15 272 0.00047 11.1 0.1 1 1 3.1e-05 0.00083 10.3 0.1 130 149 128 147 103 160 0.84 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 Zeta_toxin PF06414.7 201 8.4e-07 20.3 0.0 1 1 2.7e-08 1.4e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 Arch_ATPase PF01637.13 234 4.7e-06 18.4 0.0 1 1 1.6e-07 8.7e-06 17.6 0.0 15 68 155 205 149 226 0.87 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_16 PF13191.1 185 3.6e-07 22.3 0.0 1 1 3.4e-08 9.3e-07 21.0 0.0 24 61 158 195 149 274 0.82 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 867 AAA_16 PF13191.1 185 0.00053 12.0 0.0 1 1 0.00018 0.0049 8.9 0.0 25 47 492 514 481 574 0.85 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_32 - 332 AAA_23 PF13476.1 202 0.00024 13.5 0.0 1 1 1.4e-05 0.00039 12.8 0.0 19 39 158 178 105 184 0.91 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 867 AAA_23 PF13476.1 202 0.0026 10.1 0.0 1 1 9.5e-05 0.0026 10.1 0.0 22 39 494 511 464 521 0.84 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_32 - 332 AAA_18 PF13238.1 129 2.5e-06 19.9 0.0 1 1 2e-07 5.3e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 AAA_18 PF13238.1 129 6.9e-05 15.2 0.0 1 1 5.2e-06 0.00014 14.2 0.0 3 21 131 149 130 238 0.78 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_16 - 239 CbiA PF01656.18 195 1.5e-06 19.8 0.7 1 2 0.00041 0.022 6.1 0.1 1 19 3 21 3 24 0.89 # 10095 # 10811 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_16 - 239 CbiA PF01656.18 195 1.5e-06 19.8 0.7 2 2 6.6e-06 0.00035 12.0 0.0 110 165 89 142 33 168 0.77 # 10095 # 10811 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_32 - 332 KaiC PF06745.8 227 9.2e-05 13.6 0.0 1 1 3e-06 0.00016 12.8 0.0 16 53 155 190 148 240 0.77 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 AAA_14 PF13173.1 128 6.7e-06 18.1 0.0 1 2 4.3e-06 0.00012 14.1 0.0 6 89 130 213 125 234 0.76 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_19 - 510 AAA_14 PF13173.1 128 6.7e-06 18.1 0.0 2 2 0.043 1.2 1.1 0.0 53 81 340 372 300 391 0.57 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 AAA_14 PF13173.1 128 0.00015 13.7 0.1 1 2 0.0044 0.12 4.3 0.0 64 96 135 165 98 166 0.69 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_14 PF13173.1 128 0.00015 13.7 0.1 2 2 6.3e-05 0.0017 10.3 0.0 2 35 158 191 157 213 0.80 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 GvpD PF07088.6 484 1.4e-06 18.9 0.0 1 1 3.9e-08 2.1e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_29 PF13555.1 62 0.00054 11.6 0.0 1 1 2.3e-05 0.0013 10.4 0.0 19 43 157 178 145 188 0.75 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 AAA PF00004.24 132 1.8e-06 20.3 0.9 1 1 1.3e-07 6.9e-06 18.3 0.1 4 111 500 600 497 612 0.73 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 Sigma54_activat PF00158.21 168 4.6e-06 18.2 0.0 1 1 3.1e-07 8.4e-06 17.4 0.0 14 54 150 190 138 213 0.82 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 Sigma54_activat PF00158.21 168 9.1e-05 14.0 0.4 1 1 9.4e-06 0.00025 12.6 0.4 8 130 480 600 473 606 0.79 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 MMR_HSR1 PF01926.18 116 0.00024 13.2 0.0 1 1 7.1e-06 0.00038 12.5 0.0 2 41 161 205 160 310 0.84 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 DUF258 PF03193.11 161 6e-05 14.3 0.0 1 1 2e-06 0.00011 13.5 0.0 29 61 151 184 129 224 0.81 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 TraG-D_C PF12696.2 128 7.3e-22 69.7 0.0 1 1 2.2e-23 1.2e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 AAA_33 PF13671.1 143 0.0002 13.3 0.0 1 1 5.9e-06 0.00032 12.6 0.0 2 26 161 188 160 256 0.81 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 AAA_30 PF13604.1 196 1.1e-53 173.7 7.6 1 1 1.5e-54 4.1e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 AAA_30 PF13604.1 196 8.2e-05 14.3 0.1 1 2 4.7e-05 0.0013 10.4 0.1 11 51 151 190 145 197 0.80 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_30 PF13604.1 196 8.2e-05 14.3 0.1 2 2 0.024 0.64 1.6 0.0 121 178 204 258 191 272 0.77 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 FtsK_SpoIIIE PF01580.13 205 4.7e-07 21.5 0.0 1 1 5.1e-08 9.2e-07 20.5 0.0 38 64 158 184 139 191 0.81 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 867 FtsK_SpoIIIE PF01580.13 205 6.3e-06 17.8 0.0 1 1 8.1e-07 1.5e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 510 FtsK_SpoIIIE PF01580.13 205 0.00035 12.1 0.0 1 1 3.4e-05 0.00061 11.3 0.0 39 59 124 147 95 153 0.78 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 ABC_tran PF00005.22 137 8.4e-07 21.4 0.0 1 1 5e-08 1.3e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 867 ABC_tran PF00005.22 137 0.00037 12.9 0.0 1 1 4.6e-05 0.0012 11.2 0.0 14 38 494 518 481 550 0.83 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_32 - 332 ATP-synt_ab PF00006.20 215 0.00029 12.4 0.0 1 1 8.8e-06 0.00047 11.7 0.0 16 62 159 205 151 247 0.86 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 AAA_19 PF13245.1 76 0.00034 12.4 0.1 1 1 2.8e-05 0.00075 11.3 0.1 5 48 153 191 149 224 0.78 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 AAA_19 PF13245.1 76 0.0013 10.6 3.7 1 2 0.00056 0.015 7.2 0.2 2 75 485 551 484 552 0.75 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 AAA_19 PF13245.1 76 0.0013 10.6 3.7 2 2 0.027 0.74 1.8 0.0 17 32 706 721 705 731 0.82 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 Helicase_RecD PF05127.9 177 1.1e-05 17.2 4.9 1 2 0.00059 0.032 5.9 0.1 122 146 498 522 481 539 0.76 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 Helicase_RecD PF05127.9 177 1.1e-05 17.2 4.9 2 2 7.1e-06 0.00038 12.1 0.1 73 114 546 585 521 653 0.70 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_39 - 867 AAA_10 PF12846.2 304 1.3e-35 115.3 0.1 1 1 2.4e-36 4.3e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 510 AAA_10 PF12846.2 304 2.9e-07 22.2 0.1 1 2 2.1e-05 0.00037 12.0 0.1 3 41 128 166 126 177 0.92 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_19 - 510 AAA_10 PF12846.2 304 2.9e-07 22.2 0.1 2 2 0.00034 0.0061 8.0 0.0 214 286 339 414 307 431 0.75 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 AAA_10 PF12846.2 304 0.00014 13.3 0.0 1 1 1.2e-05 0.00022 12.7 0.0 3 29 160 185 158 233 0.81 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 ResIII PF04851.10 184 3.3e-06 19.0 0.0 1 1 9.8e-08 5.3e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 Viral_helicase1 PF01443.13 234 3.7e-15 48.1 5.4 1 2 2.3e-08 1.2e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 Viral_helicase1 PF01443.13 234 3.7e-15 48.1 5.4 2 2 3e-11 1.6e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 DUF2075 PF09848.4 352 4.9e-05 14.4 0.0 1 1 1.3e-06 7e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 DEAD PF00270.24 169 1.6e-06 19.7 0.0 1 1 5.7e-08 3.1e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 TrwB_AAD_bind PF10412.4 386 5.7e-119 389.1 0.0 1 1 3.7e-120 6.7e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_39 - 867 TrwB_AAD_bind PF10412.4 386 5e-07 20.6 1.6 1 2 1.5e-06 2.7e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_39 - 867 TrwB_AAD_bind PF10412.4 386 5e-07 20.6 1.6 2 2 0.0042 0.076 3.5 0.0 102 168 741 806 720 812 0.79 # 31704 # 34304 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_32 - 332 TrwB_AAD_bind PF10412.4 386 7.4e-06 16.8 0.1 1 1 6.4e-07 1.1e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 Sigma54_activ_2 PF14532.1 138 1.3e-06 20.6 0.0 1 1 5e-08 2.7e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 510 T4SS-DNA_transf PF02534.9 469 2.9e-12 37.8 0.0 1 1 7.9e-14 4.3e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 12180 # 13709 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 332 Pox_A32 PF04665.7 241 5.4e-05 14.6 0.0 1 1 1.7e-06 9.2e-05 13.8 0.0 12 46 157 191 150 210 0.85 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 PIF1 PF05970.9 364 1.1e-06 19.8 0.1 1 2 1.3e-07 7.2e-06 17.1 0.0 2 65 478 537 477 588 0.85 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 PIF1 PF05970.9 364 1.1e-06 19.8 0.1 2 2 0.089 4.8 -2.1 0.0 334 363 795 823 783 824 0.84 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 332 GTP_EFTU PF00009.22 188 0.00012 13.6 0.2 1 1 3.5e-06 0.00019 12.9 0.2 2 32 157 187 156 205 0.83 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 RNA_helicase PF00910.17 107 1.1e-05 17.7 0.1 1 2 3.5e-06 0.00019 13.7 0.0 1 25 161 185 161 242 0.75 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 RNA_helicase PF00910.17 107 1.1e-05 17.7 0.1 2 2 0.027 1.5 1.2 0.1 69 100 290 322 281 328 0.78 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 UPF0079 PF02367.12 123 3.3e-06 18.8 0.0 1 1 1.2e-07 6.6e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 Myosin_head PF00063.16 689 8.5e-05 12.7 0.0 1 1 2.2e-06 0.00012 12.2 0.0 84 110 157 183 147 209 0.90 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 332 NACHT PF05729.7 166 4.8e-05 15.1 0.0 1 1 1.9e-06 0.0001 14.0 0.0 1 27 159 185 159 188 0.90 # 25673 # 26668 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_20 - 1077 Herpes_Helicase PF02689.9 819 1.2e-05 15.3 0.0 1 2 0.0014 0.074 2.7 0.0 173 208 539 574 515 584 0.81 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 1077 Herpes_Helicase PF02689.9 819 1.2e-05 15.3 0.0 2 2 9.2e-06 0.0005 9.9 0.0 739 782 850 894 831 914 0.80 # 13709 # 16939 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a682ca64-6b62-4e7d-b3d1-d9688f89de4c # Target file: checkm_output/bins/pm1857/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1857/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a682ca64-6b62-4e7d-b3d1-d9688f89de4c checkm_output/bins/pm1857/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:08 2020 # [ok]