# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 195 GIDA PF01134.17 392 5.7e-80 257.6 0.5 1 1 1.3e-80 6.3e-80 257.5 0.5 1 186 8 193 8 195 0.99 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 Pyr_redox_2 PF07992.9 201 1.2e-10 30.3 1.1 1 1 4.3e-11 2.2e-10 29.4 1.1 1 119 8 156 8 163 0.63 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 Trp_halogenase PF04820.9 454 4.5e-05 10.8 0.3 1 1 1.4e-05 7e-05 10.1 0.3 1 26 8 33 8 47 0.83 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 NAD_binding_8 PF13450.1 68 4.1e-05 12.4 1.0 1 2 3.7e-05 0.00019 10.2 0.5 1 38 11 48 11 61 0.83 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 NAD_binding_8 PF13450.1 68 4.1e-05 12.4 1.0 2 2 0.063 0.32 -0.1 0.0 10 43 69 102 64 123 0.71 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 FAD_binding_3 PF01494.14 356 2.9e-05 11.8 2.4 1 1 1.4e-05 6.9e-05 10.6 2.4 3 36 8 41 6 151 0.63 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_2 - 331 AsnA PF03590.10 244 4e-133 430.9 0.0 1 1 1e-133 5.1e-133 430.6 0.0 2 244 4 246 3 246 0.99 # 884 # 1876 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_5 - 195 HI0933_like PF03486.9 409 7.6e-08 19.7 4.0 1 2 5e-08 2.5e-07 18.0 1.0 1 32 7 38 7 56 0.91 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 HI0933_like PF03486.9 409 7.6e-08 19.7 4.0 2 2 0.0025 0.012 2.6 0.1 115 163 108 156 92 158 0.83 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 FAD_binding_2 PF00890.19 417 4.6e-12 34.0 5.2 1 2 3.3e-09 1.7e-08 22.3 1.0 1 30 8 37 8 55 0.91 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 FAD_binding_2 PF00890.19 417 4.6e-12 34.0 5.2 2 2 9.2e-07 4.6e-06 14.2 0.2 146 202 106 158 56 168 0.77 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 Thi4 PF01946.12 230 9.4e-08 20.0 2.3 1 1 1.3e-07 6.6e-07 17.2 2.3 19 137 8 142 5 152 0.72 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 Pyr_redox_3 PF13738.1 203 5.5e-06 15.2 0.1 1 2 2.2e-05 0.00011 11.0 0.0 169 198 8 37 4 42 0.82 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 Pyr_redox_3 PF13738.1 203 5.5e-06 15.2 0.1 2 2 0.0094 0.047 2.4 0.0 86 138 101 159 71 174 0.59 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_2 - 331 tRNA-synt_2 PF00152.15 335 1.2e-08 22.7 0.0 1 2 0.00064 0.0032 4.8 0.0 28 148 15 145 3 187 0.63 # 884 # 1876 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_2 - 331 tRNA-synt_2 PF00152.15 335 1.2e-08 22.7 0.0 2 2 4e-07 2e-06 15.4 0.0 280 327 266 313 242 315 0.78 # 884 # 1876 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_5 - 195 FAD_oxidored PF12831.2 428 1.1e-12 36.3 3.9 1 1 2.8e-13 1.4e-12 36.0 3.9 1 143 8 152 8 153 0.72 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 DAO PF01266.19 358 2.4e-12 35.0 1.7 1 2 1.9e-06 9.3e-06 13.3 0.1 1 29 8 36 8 50 0.90 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 DAO PF01266.19 358 2.4e-12 35.0 1.7 2 2 6.6e-09 3.3e-08 21.4 0.2 137 203 92 159 58 165 0.77 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 NAD_binding_9 PF13454.1 156 1.7e-05 13.3 3.4 1 2 0.0092 0.046 2.2 0.2 1 19 10 28 10 44 0.81 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 NAD_binding_9 PF13454.1 156 1.7e-05 13.3 3.4 2 2 8.3e-06 4.2e-05 12.0 0.3 105 155 105 157 95 158 0.84 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 Pyr_redox PF00070.22 80 3.7e-07 19.3 0.7 1 1 2.4e-07 1.2e-06 17.6 0.3 2 36 9 45 8 77 0.80 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 195 AlaDh_PNT_C PF01262.16 168 3.4e-07 18.6 0.0 1 1 1.5e-07 7.4e-07 17.5 0.0 20 58 6 44 4 50 0.89 # 3398 # 3982 # 1 # ID=1_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9827f421-1efd-4c7a-a027-08efe418ea3b # Target file: checkm_output/bins/pm1853/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1853/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9827f421-1efd-4c7a-a027-08efe418ea3b checkm_output/bins/pm1853/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:01:05 2020 # [ok]