# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 343 Mg_chelatase PF01078.16 207 6.5e-06 17.4 0.1 1 2 4.7e-07 2.5e-05 15.5 0.0 13 56 158 201 147 252 0.83 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 Mg_chelatase PF01078.16 207 6.5e-06 17.4 0.1 2 2 0.057 3.1 -1.1 0.0 169 200 290 321 278 325 0.80 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 2_4 - 220 cobW PF02492.14 178 0.0001 13.8 0.0 1 1 6.5e-06 0.00035 12.1 0.0 53 102 24 99 4 171 0.74 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 IstB_IS21 PF01695.12 178 0.00061 11.3 0.0 1 1 1.7e-05 0.0009 10.7 0.0 52 84 7 40 2 60 0.85 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 MipZ PF09140.6 261 5.5e-13 40.6 0.1 1 1 5.2e-12 2.8e-10 31.7 0.1 2 129 4 111 3 187 0.84 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 YhjQ PF06564.7 244 0.00013 13.4 0.0 1 2 0.0018 0.096 4.0 0.1 3 26 4 27 2 39 0.82 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 YhjQ PF06564.7 244 0.00013 13.4 0.0 2 2 0.00017 0.0093 7.3 0.0 108 154 73 117 50 127 0.82 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_21 - 916 AAA_22 PF13401.1 131 3.2e-05 16.1 0.0 1 2 1.6e-05 0.00085 11.5 0.0 8 37 538 578 535 699 0.66 # 10631 # 13378 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_21 - 916 AAA_22 PF13401.1 131 3.2e-05 16.1 0.0 2 2 0.018 1 1.6 0.0 75 109 740 778 737 794 0.72 # 10631 # 13378 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_28 - 343 ATP_bind_1 PF03029.12 238 3.2e-05 15.6 0.0 1 1 1.1e-06 5.7e-05 14.7 0.0 2 25 173 196 172 205 0.87 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 AAA_17 PF13207.1 121 0.00021 14.2 0.3 1 1 1.7e-05 0.00094 12.1 0.1 2 19 170 187 169 220 0.80 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 MobB PF03205.9 140 6e-05 14.8 0.1 1 2 1.6e-05 0.00042 12.1 0.0 2 24 169 191 168 205 0.83 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 MobB PF03205.9 140 6e-05 14.8 0.1 2 2 0.078 2.1 0.1 0.0 79 102 299 324 252 341 0.61 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 2_4 - 220 MobB PF03205.9 140 0.00017 13.4 0.3 1 1 9e-06 0.00024 12.8 0.3 1 44 3 45 3 86 0.91 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 ArsA_ATPase PF02374.10 305 4.2e-07 21.2 0.3 1 1 1.3e-08 7.2e-07 20.5 0.1 2 52 3 54 2 66 0.88 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_28 - 343 T2SE PF00437.15 272 3.5e-63 205.0 0.0 1 1 7.5e-65 4e-63 204.8 0.0 3 270 20 322 18 324 0.96 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 Zeta_toxin PF06414.7 201 0.00023 12.3 0.0 1 1 7.4e-06 0.0004 11.5 0.0 17 60 168 214 157 244 0.82 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 2_4 - 220 VirC1 PF07015.6 231 1.8e-08 25.7 0.0 1 1 5.9e-10 3.2e-08 24.9 0.0 2 96 3 93 2 111 0.77 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_28 - 343 AAA_16 PF13191.1 185 0.00023 13.2 0.0 1 2 5.9e-05 0.0032 9.5 0.0 21 51 166 194 150 239 0.83 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 AAA_16 PF13191.1 185 0.00023 13.2 0.0 2 2 0.018 0.96 1.4 0.0 33 80 265 315 264 334 0.78 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 2_4 - 220 CbiA PF01656.18 195 2.8e-20 64.5 0.0 1 1 7e-22 3.8e-20 64.1 0.0 1 184 5 172 5 186 0.81 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_28 - 343 AAA_14 PF13173.1 128 0.00036 12.5 0.0 1 1 1.3e-05 0.00073 11.5 0.0 2 47 167 210 166 261 0.81 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 AAA_29 PF13555.1 62 8.1e-05 14.2 0.1 1 1 3.9e-06 0.00021 12.9 0.1 22 41 166 185 158 191 0.84 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_29 - 606 TraG-D_C PF12696.2 128 3.8e-25 80.3 0.0 1 1 1.2e-26 6.5e-25 79.5 0.0 2 127 407 526 406 527 0.91 # 19491 # 21308 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 2_4 - 220 AAA_31 PF13614.1 157 7.3e-08 24.5 0.0 1 2 1.8e-05 0.001 11.1 0.0 1 61 3 63 3 70 0.86 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 AAA_31 PF13614.1 157 7.3e-08 24.5 0.0 2 2 1.4e-05 0.00075 11.5 0.0 112 151 75 113 67 115 0.87 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_28 - 343 AAA_30 PF13604.1 196 0.0006 11.4 0.4 1 1 3e-05 0.0016 10.1 0.1 10 41 159 190 152 200 0.76 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 FtsK_SpoIIIE PF01580.13 205 2.3e-06 19.2 0.0 1 1 3.4e-07 9.2e-06 17.3 0.0 7 59 135 188 130 194 0.77 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_21 - 916 FtsK_SpoIIIE PF01580.13 205 7.1e-06 17.6 0.0 1 1 4.8e-07 1.3e-05 16.8 0.0 36 70 532 566 521 568 0.89 # 10631 # 13378 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_28 - 343 ABC_tran PF00005.22 137 4.8e-06 19.0 0.0 1 1 1.8e-07 9.8e-06 18.0 0.0 5 45 161 201 158 223 0.83 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_21 - 916 AAA_10 PF12846.2 304 1.3e-32 105.5 0.0 1 1 7.7e-34 2.1e-32 104.7 0.0 3 303 536 834 535 835 0.88 # 10631 # 13378 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_28 - 343 AAA_10 PF12846.2 304 0.00023 12.6 0.0 1 2 0.057 1.5 0.1 0.0 119 154 119 153 58 166 0.72 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 AAA_10 PF12846.2 304 0.00023 12.6 0.0 2 2 5.3e-05 0.0014 10.1 0.0 4 23 170 189 167 204 0.85 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 ResIII PF04851.10 184 0.00028 12.7 0.0 1 1 8.7e-06 0.00047 12.0 0.0 24 46 166 188 128 217 0.77 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 Viral_helicase1 PF01443.13 234 0.00036 12.1 0.0 1 1 1.4e-05 0.00076 11.0 0.0 1 25 170 193 170 223 0.78 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_29 - 606 TrwB_AAD_bind PF10412.4 386 1.3e-17 55.4 0.0 1 1 8.5e-19 2.3e-17 54.6 0.0 165 380 322 540 305 542 0.81 # 19491 # 21308 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_28 - 343 TrwB_AAD_bind PF10412.4 386 8.7e-05 13.2 0.0 1 1 5.3e-06 0.00014 12.5 0.0 16 40 168 192 160 214 0.85 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_29 - 606 T4SS-DNA_transf PF02534.9 469 5.5e-96 313.9 0.0 1 1 1.4e-97 7.4e-96 313.5 0.0 45 452 132 553 86 574 0.87 # 19491 # 21308 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 2_4 - 220 ArgK PF03308.11 267 0.00047 11.0 0.0 1 2 0.00035 0.019 5.7 0.2 31 66 4 40 2 46 0.80 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_4 - 220 ArgK PF03308.11 267 0.00047 11.0 0.0 2 2 0.0022 0.12 3.1 0.0 119 168 78 128 71 172 0.85 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_28 - 343 Pox_A32 PF04665.7 241 3.6e-05 15.2 0.0 1 1 1e-06 5.5e-05 14.6 0.0 16 67 170 218 161 247 0.73 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 UPF0079 PF02367.12 123 0.00012 13.8 0.1 1 1 3.8e-06 0.00021 13.0 0.1 10 37 162 189 153 199 0.82 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 343 NACHT PF05729.7 166 0.00024 12.8 0.0 1 1 2.2e-05 0.0006 11.5 0.0 2 22 169 189 168 195 0.91 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_21 - 916 NACHT PF05729.7 166 0.00025 12.8 0.0 1 1 2.3e-05 0.00062 11.5 0.0 5 29 539 563 537 568 0.85 # 10631 # 13378 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_16 - 89 Ub-RnfH PF03658.9 84 0.00032 12.6 0.1 1 2 0.0001 0.0056 8.6 0.0 26 47 3 24 1 33 0.87 # 8792 # 9058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.408 1_16 - 89 Ub-RnfH PF03658.9 84 0.00032 12.6 0.1 2 2 0.0066 0.36 2.9 0.0 22 50 34 64 23 67 0.71 # 8792 # 9058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_4 - 220 AAA_25 PF13481.1 194 0.00017 13.0 0.0 1 1 9.9e-06 0.00027 12.4 0.0 34 62 3 33 1 61 0.77 # 2508 # 3167 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_28 - 343 AAA_25 PF13481.1 194 0.0002 12.8 0.1 1 1 1.6e-05 0.00043 11.7 0.1 31 54 165 188 158 199 0.90 # 18431 # 19459 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f3603f21-82e3-4b3b-82e9-4fb916a6b383 # Target file: checkm_output/bins/pm184/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm184/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f3603f21-82e3-4b3b-82e9-4fb916a6b383 checkm_output/bins/pm184/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:59 2020 # [ok]