# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 188 Methyltransf_12 PF08242.7 99 1e-05 18.9 0.0 1 1 1.7e-07 1.8e-05 18.2 0.0 1 99 55 144 55 144 0.86 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_9 - 228 UPF0020 PF01170.13 180 2.5e-05 16.8 0.0 1 2 0.00052 0.053 6.0 0.0 103 117 17 31 6 78 0.84 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_9 - 228 UPF0020 PF01170.13 180 2.5e-05 16.8 0.0 2 2 6.6e-05 0.0067 8.9 0.0 28 54 163 188 158 220 0.67 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 5_3 - 181 cobW PF02492.14 178 0.00076 11.9 0.0 1 1 1.3e-05 0.0013 11.1 0.0 2 21 2 21 1 29 0.81 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 188 RrnaAD PF00398.15 262 5.4e-09 28.3 0.0 1 1 6.9e-11 6.9e-09 28.0 0.0 9 113 29 128 24 148 0.89 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_21 - 180 SSB PF00436.20 104 6.3e-41 131.5 0.5 1 1 7.8e-43 7.9e-41 131.1 0.5 1 101 6 109 6 112 0.96 # 19846 # 20385 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.589 1_19 - 188 Methyltransf_18 PF12847.2 112 5.6e-11 36.0 0.0 1 1 1.2e-12 1.2e-10 34.9 0.0 4 109 53 146 50 148 0.89 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_61 - 1757 UvrD_C_2 PF13538.1 104 4.1e-08 26.3 0.8 1 2 0.013 1.3 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_61 - 1757 UvrD_C_2 PF13538.1 104 4.1e-08 26.3 0.8 2 2 1.2e-08 1.3e-06 21.5 0.2 3 102 1341 1444 1339 1446 0.78 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_44 - 877 DUF87 PF01935.12 229 1.1e-07 24.8 0.0 1 1 6.5e-09 3.3e-07 23.2 0.0 26 222 483 670 469 677 0.77 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_39 - 107 DUF87 PF01935.12 229 0.00048 12.9 0.0 1 1 1.4e-05 0.00072 12.3 0.0 25 50 74 99 72 103 0.91 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_3 - 181 AAA_22 PF13401.1 131 1.6e-05 18.0 0.0 1 1 9.4e-07 4.7e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_39 - 107 AAA_22 PF13401.1 131 0.00095 12.3 0.0 1 1 3.3e-05 0.0017 11.5 0.0 3 27 71 95 66 103 0.86 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_9 - 228 N6_N4_Mtase PF01555.13 231 9.3e-36 116.3 0.0 1 2 1.7e-14 1.7e-12 40.2 0.0 1 114 21 124 21 137 0.87 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_9 - 228 N6_N4_Mtase PF01555.13 231 9.3e-36 116.3 0.0 2 2 5.7e-25 5.7e-23 74.5 0.0 169 228 141 200 127 203 0.90 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 5_3 - 181 AAA_17 PF13207.1 121 2.4e-06 21.3 0.0 1 1 9.6e-08 4.9e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_60 - 742 AAA_17 PF13207.1 121 0.00033 14.4 0.0 1 1 2.4e-05 0.0012 12.6 0.0 3 27 189 217 187 262 0.68 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 892 AAA_21 PF13304.1 303 3.4e-07 23.3 0.0 1 2 2.4e-05 0.0024 10.7 0.0 2 72 286 347 285 362 0.75 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 892 AAA_21 PF13304.1 303 3.4e-07 23.3 0.0 2 2 2.9e-05 0.0029 10.4 0.0 146 300 667 835 656 838 0.74 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_44 - 877 MobB PF03205.9 140 0.00026 13.6 0.2 1 2 5.4e-05 0.0027 10.3 0.0 4 37 484 516 482 524 0.79 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_44 - 877 MobB PF03205.9 140 0.00026 13.6 0.2 2 2 0.069 3.5 0.3 0.0 25 64 696 733 691 745 0.86 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_4 - 892 MobB PF03205.9 140 0.00064 12.4 0.0 1 1 2.9e-05 0.0014 11.2 0.0 4 20 287 303 284 316 0.83 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 120 CTP_transf_2 PF01467.21 157 0.0008 12.4 0.0 1 1 8.5e-06 0.00086 12.3 0.0 31 64 6 38 1 93 0.70 # 29331 # 29690 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_39 - 107 T2SE PF00437.15 272 0.0008 11.2 0.0 1 1 1.4e-05 0.0014 10.4 0.0 109 154 56 98 45 103 0.79 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_3 - 181 Cytidylate_kin2 PF13189.1 179 0.001 11.9 0.0 1 2 9.1e-05 0.0092 8.8 0.0 1 22 2 23 2 44 0.81 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_3 - 181 Cytidylate_kin2 PF13189.1 179 0.001 11.9 0.0 2 2 0.026 2.7 0.8 0.0 110 135 96 122 94 136 0.74 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_3 - 181 Zeta_toxin PF06414.7 201 8.1e-05 14.7 0.0 1 2 4.2e-05 0.0021 10.1 0.0 19 50 3 32 1 39 0.78 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_3 - 181 Zeta_toxin PF06414.7 201 8.1e-05 14.7 0.0 2 2 0.009 0.45 2.4 0.0 94 123 73 102 57 160 0.77 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_39 - 107 Zeta_toxin PF06414.7 201 0.0013 10.7 0.1 1 1 3.4e-05 0.0017 10.4 0.1 14 39 70 95 59 102 0.80 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 892 SMC_N PF02463.14 220 7.9e-11 34.5 0.0 1 1 5e-12 5e-10 31.8 0.0 16 217 275 851 267 853 0.91 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_60 - 742 AAA_16 PF13191.1 185 4.4e-06 19.7 0.0 1 1 6.1e-07 2.1e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_39 - 107 AAA_16 PF13191.1 185 0.00028 13.8 0.0 1 1 1.4e-05 0.00046 13.1 0.0 22 51 70 99 64 104 0.90 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 892 AAA_16 PF13191.1 185 0.0032 10.3 0.0 1 1 9.6e-05 0.0032 10.3 0.0 29 51 288 310 282 323 0.83 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 892 AAA_23 PF13476.1 202 1.2e-08 28.5 0.0 1 1 2e-10 2e-08 27.7 0.0 12 150 276 473 263 597 0.63 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 5_3 - 181 AAA_18 PF13238.1 129 2e-09 30.8 0.0 1 1 3.9e-11 3.9e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_4 - 892 AAA_29 PF13555.1 62 3.4e-05 16.3 0.1 1 1 8.4e-07 8.4e-05 15.0 0.1 26 47 286 307 274 319 0.79 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 188 N6_Mtase PF02384.11 311 0.00024 13.1 0.0 1 2 3.4e-05 0.0034 9.3 0.0 28 62 32 66 21 75 0.89 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_19 - 188 N6_Mtase PF02384.11 311 0.00024 13.1 0.0 2 2 0.014 1.4 0.7 0.0 127 137 114 124 103 134 0.82 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_60 - 742 TraG-D_C PF12696.2 128 7.9e-21 67.2 0.0 1 1 1.4e-22 1.4e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 181 AAA_33 PF13671.1 143 3.1e-10 33.0 0.0 1 1 4.3e-12 4.3e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 188 Methyltransf_26 PF13659.1 117 4.2e-14 45.5 0.1 1 1 1.5e-15 7.6e-14 44.7 0.1 2 114 52 147 51 150 0.90 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_9 - 228 Methyltransf_26 PF13659.1 117 7.9e-12 38.2 0.1 1 2 3e-07 1.5e-05 17.9 0.0 54 114 4 71 2 86 0.74 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_9 - 228 Methyltransf_26 PF13659.1 117 7.9e-12 38.2 0.1 2 2 2.4e-07 1.2e-05 18.3 0.0 4 44 167 206 164 221 0.83 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_61 - 1757 AAA_30 PF13604.1 196 2.3e-44 144.2 13.5 1 3 0.083 4.2 -0.2 0.0 41 86 223 269 219 281 0.81 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_61 - 1757 AAA_30 PF13604.1 196 2.3e-44 144.2 13.5 2 3 1.3e-05 0.00066 12.2 3.5 7 147 420 552 416 562 0.84 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_61 - 1757 AAA_30 PF13604.1 196 2.3e-44 144.2 13.5 3 3 1.9e-43 9.6e-42 135.7 1.1 1 186 968 1156 968 1160 0.94 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_60 - 742 AAA_30 PF13604.1 196 0.0006 12.3 0.0 1 1 2.6e-05 0.0013 11.2 0.0 21 57 188 224 180 230 0.85 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_39 - 107 FtsK_SpoIIIE PF01580.13 205 2.9e-06 19.8 0.0 1 1 7e-08 3.6e-06 19.5 0.0 26 66 58 100 37 103 0.82 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_44 - 877 FtsK_SpoIIIE PF01580.13 205 4.2e-06 19.3 0.2 1 2 4.1e-06 0.00021 13.7 0.0 39 63 477 505 464 508 0.84 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_44 - 877 FtsK_SpoIIIE PF01580.13 205 4.2e-06 19.3 0.2 2 2 0.0077 0.39 3.0 0.1 75 167 531 627 530 633 0.85 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_19 - 188 MTS PF05175.9 170 3.9e-09 29.0 0.0 1 1 5.5e-11 5.5e-09 28.5 0.0 24 141 45 149 41 166 0.84 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_19 - 188 Methyltrans_SAM PF10672.4 286 0.00088 11.0 0.0 1 1 1.2e-05 0.0012 10.6 0.0 196 261 113 173 99 180 0.79 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_19 - 188 Met_10 PF02475.11 200 0.00027 13.5 0.0 1 1 3.6e-06 0.00037 13.0 0.0 94 189 43 132 29 145 0.80 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_4 - 892 ABC_tran PF00005.22 137 1.2e-05 18.5 0.0 1 1 2.9e-07 2.9e-05 17.3 0.0 15 68 287 342 277 455 0.83 # 3108 # 5783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_9 - 228 Cons_hypoth95 PF03602.10 183 1.7e-05 17.2 0.0 1 2 0.00051 0.052 5.8 0.0 112 127 18 33 4 81 0.70 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_9 - 228 Cons_hypoth95 PF03602.10 183 1.7e-05 17.2 0.0 2 2 3.8e-05 0.0039 9.5 0.0 41 62 162 183 145 219 0.77 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_61 - 1757 AAA_19 PF13245.1 76 2.2e-07 23.5 2.4 1 1 8.9e-09 4.5e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 5_3 - 181 AAA_19 PF13245.1 76 0.00043 13.0 0.0 1 1 3.5e-05 0.0018 11.0 0.0 15 33 5 22 2 36 0.85 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_44 - 877 AAA_10 PF12846.2 304 4e-49 160.5 0.0 1 1 2e-50 6.7e-49 159.8 0.0 1 294 480 769 480 775 0.88 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_60 - 742 AAA_10 PF12846.2 304 1.4e-10 33.9 0.0 1 1 7.6e-11 2.6e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_39 - 107 AAA_10 PF12846.2 304 5.6e-05 15.6 0.0 1 2 0.024 0.81 1.9 0.0 264 289 21 41 11 54 0.84 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_39 - 107 AAA_10 PF12846.2 304 5.6e-05 15.6 0.0 2 2 2.3e-05 0.00077 11.8 0.0 2 24 73 95 72 100 0.87 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_19 - 188 Methyltransf_31 PF13847.1 152 5.2e-07 22.3 0.0 1 1 6.4e-09 6.4e-07 22.0 0.0 5 119 52 162 48 183 0.83 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_60 - 742 TrwB_AAD_bind PF10412.4 386 2.7e-150 493.1 0.0 1 1 9.8e-152 3.3e-150 492.8 0.0 2 386 172 561 171 561 0.99 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_44 - 877 TrwB_AAD_bind PF10412.4 386 4.1e-07 21.8 0.1 1 2 7.2e-08 2.4e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_44 - 877 TrwB_AAD_bind PF10412.4 386 4.1e-07 21.8 0.1 2 2 0.061 2.1 -0.3 0.0 261 317 714 770 686 773 0.92 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_39 - 107 TrwB_AAD_bind PF10412.4 386 0.00017 13.2 0.0 1 2 0.086 2.9 -0.8 0.0 295 331 25 61 17 68 0.69 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_39 - 107 TrwB_AAD_bind PF10412.4 386 0.00017 13.2 0.0 2 2 1.1e-05 0.00038 12.0 0.0 6 42 63 99 59 103 0.88 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_61 - 1757 AAA_11 PF13086.1 236 8.8e-05 15.1 1.5 1 1 3.2e-06 0.00033 13.2 0.0 2 72 969 1036 968 1063 0.82 # 53641 # 58911 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_60 - 742 T4SS-DNA_transf PF02534.9 469 4.7e-10 31.4 0.0 1 1 2.1e-11 1.1e-09 30.3 0.0 250 361 362 476 198 500 0.76 # 51416 # 53641 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_44 - 877 T4SS-DNA_transf PF02534.9 469 0.00021 12.8 0.0 1 2 0.0031 0.16 3.3 0.0 105 184 534 607 471 626 0.82 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_44 - 877 T4SS-DNA_transf PF02534.9 469 0.00021 12.8 0.0 2 2 0.00021 0.011 7.2 0.0 319 378 712 770 663 772 0.90 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_19 - 188 TIGR00755 TIGR00755 256 6.1e-09 28.1 0.0 1 1 8.1e-11 8.2e-09 27.7 0.0 8 105 29 123 25 134 0.90 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_9 - 228 MethyltransfD12 PF02086.10 260 0.00059 12.2 0.0 1 2 0.033 3.3 -0.1 0.0 176 188 19 31 8 38 0.81 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_9 - 228 MethyltransfD12 PF02086.10 260 0.00059 12.2 0.0 2 2 3.7e-05 0.0037 9.6 0.0 20 46 163 189 148 206 0.80 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_39 - 107 Pox_A32 PF04665.7 241 0.00012 14.3 0.0 1 2 0.078 3.9 -0.5 0.0 4 28 43 66 41 70 0.70 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_39 - 107 Pox_A32 PF04665.7 241 0.00012 14.3 0.0 2 2 5.6e-06 0.00028 13.1 0.0 7 42 66 101 60 104 0.89 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_44 - 877 Pox_A32 PF04665.7 241 0.00086 11.5 0.0 1 1 4.6e-05 0.0023 10.1 0.0 7 38 474 505 470 520 0.85 # 36024 # 38654 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_19 - 188 Methyltransf_23 PF13489.1 161 9.7e-05 15.1 0.0 1 1 1.1e-06 0.00011 14.8 0.0 11 120 40 153 10 174 0.79 # 18393 # 18956 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_39 - 107 RNA_helicase PF00910.17 107 0.00016 14.8 0.0 1 1 2.7e-06 0.00028 14.0 0.0 1 29 75 103 75 106 0.91 # 33313 # 33633 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_3 - 181 AAA_24 PF13479.1 213 0.0001 14.9 0.0 1 1 1.2e-06 0.00013 14.5 0.0 6 33 3 34 1 99 0.87 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_3 - 181 NACHT PF05729.7 166 8.3e-05 15.2 0.1 1 1 2.1e-06 0.00021 13.9 0.0 2 21 2 21 1 29 0.91 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_9 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.7 0.0 1 2 0.0096 0.97 1.9 0.0 53 79 4 29 2 33 0.93 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_9 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.7 0.0 2 2 4.2e-05 0.0043 9.5 0.0 3 31 166 194 164 209 0.86 # 9715 # 10398 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 5_3 - 181 AAA_28 PF13521.1 163 0.00016 14.6 0.0 1 1 4.7e-06 0.00048 13.0 0.0 2 29 3 33 2 58 0.77 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_3 - 181 APS_kinase PF01583.15 157 1.3e-05 17.8 0.0 1 2 1e-05 0.001 11.6 0.0 4 24 2 22 1 30 0.89 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_3 - 181 APS_kinase PF01583.15 157 1.3e-05 17.8 0.0 2 2 0.0021 0.21 4.1 0.1 34 72 107 147 91 157 0.86 # 1044 # 1586 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8ab1baf0-253d-4334-9662-d02c5837fad6 # Target file: checkm_output/bins/pm1833/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1833/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8ab1baf0-253d-4334-9662-d02c5837fad6 checkm_output/bins/pm1833/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:59 2020 # [ok]