# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 565 3HCDH_N PF02737.13 180 0.001 10.0 6.4 1 2 0.0047 0.15 2.9 2.4 1 30 99 128 99 134 0.93 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 3HCDH_N PF02737.13 180 0.001 10.0 6.4 2 2 9e-05 0.0029 8.6 0.1 2 39 272 309 271 348 0.73 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 8.2e-09 26.0 6.6 1 3 3.5e-10 1.1e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 8.2e-09 26.0 6.6 2 3 0.038 1.2 -0.9 0.0 3 31 273 301 271 315 0.84 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 8.2e-09 26.0 6.6 3 3 0.018 0.59 0.1 0.1 349 385 393 429 387 433 0.77 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_2 PF07992.9 201 2.5e-44 142.8 0.0 1 1 3.2e-45 1e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DFP PF04127.10 185 0.00025 12.0 2.4 1 2 0.00039 0.013 6.4 0.4 28 51 105 128 99 156 0.83 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DFP PF04127.10 185 0.00025 12.0 2.4 2 2 0.0014 0.044 4.7 0.1 32 53 281 302 276 336 0.77 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_7 PF13241.1 103 1.1e-07 23.4 1.2 1 2 5.4e-05 0.0017 9.9 0.2 9 38 99 128 96 184 0.89 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_7 PF13241.1 103 1.1e-07 23.4 1.2 2 2 1.4e-05 0.00045 11.8 0.1 8 41 270 306 264 380 0.74 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_8 PF13450.1 68 1.1e-05 16.7 1.2 1 2 3.5e-07 1.1e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_8 PF13450.1 68 1.1e-05 16.7 1.2 2 2 0.041 1.3 0.5 0.2 1 25 274 298 274 303 0.81 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 F420_oxidored PF03807.12 96 0.0023 9.7 4.1 1 2 0.0023 0.075 4.9 1.2 2 31 100 126 99 131 0.87 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 F420_oxidored PF03807.12 96 0.0023 9.7 4.1 2 2 0.0075 0.24 3.3 0.1 1 34 271 300 271 323 0.87 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 HI0933_like PF03486.9 409 7.1e-09 25.8 3.7 1 2 1.2e-06 3.8e-05 13.5 2.5 2 33 99 130 98 138 0.91 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 HI0933_like PF03486.9 409 7.1e-09 25.8 3.7 2 2 7.2e-06 0.00023 10.9 0.0 82 164 284 366 276 385 0.83 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 1.4e-06 18.6 4.7 1 3 4.3e-08 1.4e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 1.4e-06 18.6 4.7 2 3 0.034 1.1 -0.8 0.1 143 204 311 369 297 388 0.72 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 1.4e-06 18.6 4.7 3 3 0.074 2.4 -1.9 0.0 376 402 388 408 377 424 0.82 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_3 PF13738.1 203 4.1e-18 57.4 0.1 1 2 4.4e-14 1.4e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_3 PF13738.1 203 4.1e-18 57.4 0.1 2 2 9e-07 2.9e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 1.8e-06 18.3 0.0 1 3 0.0039 0.13 2.4 0.0 187 220 94 125 59 130 0.79 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 1.8e-06 18.3 0.0 2 3 3.3e-06 0.00011 12.5 0.0 132 231 218 308 202 332 0.82 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 1.8e-06 18.3 0.0 3 3 0.057 1.8 -1.4 0.0 132 160 346 369 314 377 0.67 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_oxidored PF12831.2 428 9.3e-07 19.4 3.6 1 1 2.9e-08 9.3e-07 19.4 3.6 2 41 100 138 99 167 0.83 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 1.4e-09 28.6 11.7 1 3 1.4e-08 4.4e-07 20.3 0.7 1 38 99 134 99 190 0.84 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 1.4e-09 28.6 11.7 2 3 0.032 1 -0.6 0.1 3 31 273 301 271 307 0.75 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 1.4e-09 28.6 11.7 3 3 9.4e-07 3e-05 14.3 0.5 152 208 314 372 307 433 0.74 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 9.1e-06 16.8 2.8 1 3 0.0081 0.26 2.3 0.1 1 41 101 135 101 162 0.81 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 9.1e-06 16.8 2.8 2 3 0.034 1.1 0.3 0.0 134 155 218 241 202 242 0.72 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 9.1e-06 16.8 2.8 3 3 6.6e-06 0.00021 12.4 0.1 112 155 321 366 311 367 0.85 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox PF00070.22 80 1.2e-20 65.1 6.0 1 2 1.4e-06 4.6e-05 15.2 1.5 1 31 99 129 99 131 0.96 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox PF00070.22 80 1.2e-20 65.1 6.0 2 2 6.2e-18 2e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 AlaDh_PNT_C PF01262.16 168 7.6e-06 16.9 3.1 1 2 0.00051 0.016 6.0 0.8 15 50 92 127 89 130 0.90 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 AlaDh_PNT_C PF01262.16 168 7.6e-06 16.9 3.1 2 2 2.1e-05 0.00068 10.5 0.1 16 58 265 307 257 339 0.84 # 2765 # 4459 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_1 - 236 AAA_25 PF13481.1 194 1.7e-25 80.8 0.0 1 1 7.1e-27 2.3e-25 80.4 0.0 48 193 1 140 1 141 0.86 # 137 # 844 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5e02eaef-c2a1-4991-8df3-93d13db82f22 # Target file: checkm_output/bins/pm1819/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1819/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5e02eaef-c2a1-4991-8df3-93d13db82f22 checkm_output/bins/pm1819/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:48 2020 # [ok]