# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 260 IstB_IS21 PF01695.12 178 1.4e-61 197.6 0.0 1 1 1e-62 2e-61 197.1 0.0 5 177 59 233 36 234 0.95 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_22 PF13401.1 131 2.9e-07 21.4 0.0 1 2 5.8e-06 0.00012 12.9 0.1 4 27 101 124 98 143 0.77 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_22 PF13401.1 131 2.9e-07 21.4 0.0 2 2 0.00085 0.017 5.9 0.0 77 101 151 178 124 201 0.64 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_17 PF13207.1 121 8.3e-05 14.1 0.0 1 1 9.4e-06 0.00019 12.9 0.0 2 21 104 123 103 206 0.78 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 PhoH PF02562.11 205 1.2e-07 21.7 0.1 1 1 1e-08 2.1e-07 21.0 0.1 14 56 96 138 84 163 0.80 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AFG1_ATPase PF03969.11 362 0.0001 11.8 0.0 1 1 1e-05 0.0002 10.8 0.0 64 214 103 251 84 258 0.78 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_16 PF13191.1 185 2.3e-06 18.3 0.6 1 3 2.5e-06 4.9e-05 14.0 0.1 23 41 100 118 87 135 0.84 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_16 PF13191.1 185 2.3e-06 18.3 0.6 2 3 0.034 0.69 0.5 0.0 124 162 143 175 124 193 0.74 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_16 PF13191.1 185 2.3e-06 18.3 0.6 3 3 0.072 1.4 -0.6 0.0 38 62 217 242 207 252 0.75 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_14 PF13173.1 128 5.5e-08 23.5 0.0 1 2 1.4e-08 2.8e-07 21.2 0.0 3 97 102 203 100 220 0.64 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_14 PF13173.1 128 5.5e-08 23.5 0.0 2 2 0.048 0.96 0.0 0.0 14 46 215 247 212 257 0.80 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA PF00004.24 132 6.4e-09 26.8 0.0 1 1 5.8e-10 1.2e-08 25.9 0.0 1 70 104 175 104 207 0.82 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 Bac_DnaA PF00308.13 219 1.3e-09 28.6 0.0 1 1 1e-10 2e-09 28.0 0.0 36 136 103 201 92 209 0.84 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 DUF258 PF03193.11 161 2.4e-05 14.2 0.0 1 1 1.9e-06 3.9e-05 13.5 0.0 23 59 89 125 70 153 0.79 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 NTPase_1 PF03266.10 168 6.1e-05 13.4 0.2 1 2 0.0021 0.041 4.2 0.2 2 30 104 132 103 143 0.81 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 NTPase_1 PF03266.10 168 6.1e-05 13.4 0.2 2 2 0.0003 0.006 6.9 0.0 87 108 155 176 141 202 0.77 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 ABC_tran PF00005.22 137 9.7e-05 13.3 0.2 1 1 1.8e-05 0.00036 11.5 0.1 8 31 98 121 95 133 0.85 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_10 PF12846.2 304 4e-05 13.7 0.5 1 1 5.4e-06 0.00011 12.3 0.1 3 35 103 135 101 172 0.84 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 Sigma54_activ_2 PF14532.1 138 5.8e-05 13.8 0.0 1 1 4.6e-06 9.2e-05 13.2 0.0 9 65 87 145 84 229 0.70 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_24 PF13479.1 213 0.00021 11.5 0.2 1 1 2.3e-05 0.00047 10.4 0.1 5 23 103 121 99 130 0.84 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 NACHT PF05729.7 166 5.4e-05 13.5 0.0 1 1 4.5e-06 9e-05 12.8 0.0 3 49 104 151 102 200 0.80 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_25 PF13481.1 194 3.5e-06 17.1 1.6 1 1 2.2e-07 4.4e-06 16.8 0.2 29 60 97 128 71 203 0.76 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_28 PF13521.1 163 4.7e-05 14.0 0.1 1 1 5.9e-06 0.00012 12.7 0.0 1 49 103 156 103 171 0.73 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_10 - 260 AAA_5 PF07728.9 139 1.5e-06 18.6 0.0 1 1 1.7e-07 3.5e-06 17.5 0.0 1 74 103 172 103 177 0.81 # 8713 # 9492 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7aa73bda-5537-44f7-b8bc-5a5729be7830 # Target file: checkm_output/bins/pm1813/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1813/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7aa73bda-5537-44f7-b8bc-5a5729be7830 checkm_output/bins/pm1813/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:43 2020 # [ok]