# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_12 - 207 cobW PF02492.14 178 0.00018 13.4 0.2 1 2 1.8e-05 0.0014 10.6 0.0 10 38 12 41 3 47 0.86 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 cobW PF02492.14 178 0.00018 13.4 0.2 2 2 0.019 1.4 0.7 0.1 114 146 115 147 71 170 0.78 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 MipZ PF09140.6 261 1.3e-14 46.3 0.9 1 2 1.3e-11 9.7e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 MipZ PF09140.6 261 1.3e-14 46.3 0.9 2 2 8.2e-07 6.1e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_6 - 755 UvrD_C_2 PF13538.1 104 1.2e-06 21.2 0.0 1 1 6.4e-08 4.7e-06 19.2 0.0 66 104 672 724 631 724 0.88 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 755 AAA_22 PF13401.1 131 2e-05 17.3 0.6 1 2 0.00018 0.014 8.1 0.2 8 97 243 352 236 394 0.61 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 755 AAA_22 PF13401.1 131 2e-05 17.3 0.6 2 2 0.00035 0.026 7.2 0.0 50 121 418 502 371 508 0.74 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 4_12 - 207 DUF1611 PF07755.6 301 2.8e-06 18.6 0.3 1 1 5.8e-08 4.3e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 ATP_bind_1 PF03029.12 238 3.5e-05 15.9 0.0 1 1 8.4e-07 6.2e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 SRP54 PF00448.17 196 7.8e-05 14.6 0.4 1 1 3.6e-06 0.00027 12.9 0.3 11 54 12 50 2 142 0.73 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 AAA_17 PF13207.1 121 6.3e-05 16.3 0.0 1 1 1.1e-06 8.5e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 MobB PF03205.9 140 1.9e-06 20.1 0.4 1 1 1.4e-07 1e-05 17.8 0.1 10 104 12 88 2 104 0.68 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 LpxK PF02606.9 326 3.9e-05 15.1 0.1 1 1 8.4e-07 6.2e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 ArsA_ATPase PF02374.10 305 2.1e-08 26.0 0.2 1 1 4.8e-10 3.6e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 VirC1 PF07015.6 231 5.5e-15 47.5 0.2 1 1 1.5e-16 1.1e-14 46.5 0.2 1 131 1 123 1 174 0.79 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 Fer4_NifH PF00142.13 273 1.2e-06 20.4 0.0 1 1 2.8e-08 2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_10 - 513 AAA_13 PF13166.1 712 0.00025 12.0 1.1 1 2 1.3e-05 0.00095 10.1 0.2 361 441 5 85 2 102 0.89 # 5214 # 6752 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 3_10 - 513 AAA_13 PF13166.1 712 0.00025 12.0 1.1 2 2 0.012 0.87 0.3 0.1 427 469 374 416 348 423 0.77 # 5214 # 6752 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 4_12 - 207 CbiA PF01656.18 195 7.8e-29 92.9 1.6 1 1 2.7e-30 2e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_6 - 755 UvrD_C PF13361.1 351 1.6e-09 30.1 5.4 1 3 0.0088 0.65 1.8 0.4 174 273 137 231 7 238 0.67 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 755 UvrD_C PF13361.1 351 1.6e-09 30.1 5.4 2 3 0.04 2.9 -0.4 0.0 7 24 538 563 533 647 0.66 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 755 UvrD_C PF13361.1 351 1.6e-09 30.1 5.4 3 3 6.8e-11 5e-09 28.4 0.0 298 348 672 725 671 728 0.86 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 4_12 - 207 AAA_31 PF13614.1 157 1.3e-08 27.4 0.3 1 2 9.4e-09 6.9e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 AAA_31 PF13614.1 157 1.3e-08 27.4 0.3 2 2 0.0047 0.35 3.3 0.0 115 152 74 109 58 114 0.83 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 NTPase_1 PF03266.10 168 0.00027 13.1 0.1 1 1 1.1e-05 0.00084 11.5 0.0 7 58 10 66 5 94 0.80 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 AAA_30 PF13604.1 196 0.00026 13.1 0.4 1 1 1.5e-05 0.00055 12.0 0.1 26 106 10 88 2 97 0.75 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_6 - 755 AAA_30 PF13604.1 196 0.00057 12.0 0.0 1 2 0.00011 0.0041 9.2 0.0 19 102 240 351 225 352 0.53 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 755 AAA_30 PF13604.1 196 0.00057 12.0 0.0 2 2 0.085 3.2 -0.3 0.0 95 176 471 555 447 563 0.81 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 4_13 - 124 RuvB_N PF05496.7 234 0.00058 11.4 0.0 1 1 1.1e-05 0.00082 10.9 0.0 78 117 46 84 40 90 0.87 # 7117 # 7488 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 4_12 - 207 AAA_10 PF12846.2 304 9.7e-06 17.6 0.0 1 1 2.3e-07 1.7e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_10 - 513 DUF3584 PF12128.3 1201 0.01 5.6 7.4 1 2 2.5e-05 0.0019 8.0 2.5 305 377 13 86 4 100 0.86 # 5214 # 6752 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 3_10 - 513 DUF3584 PF12128.3 1201 0.01 5.6 7.4 2 2 0.0071 0.52 -0.1 0.2 738 765 373 400 333 422 0.56 # 5214 # 6752 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 1_6 - 755 DUF2075 PF09848.4 352 6.1e-07 21.1 0.1 1 2 1.3e-05 0.00099 10.6 0.1 6 92 244 351 243 352 0.75 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 755 DUF2075 PF09848.4 352 6.1e-07 21.1 0.1 2 2 8.1e-05 0.006 8.0 0.0 75 178 454 551 393 561 0.74 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 4_12 - 207 ArgK PF03308.11 267 8.1e-05 13.9 0.0 1 1 2.5e-06 0.00019 12.7 0.0 39 72 12 45 5 53 0.90 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 AAA_24 PF13479.1 213 0.00046 12.3 0.6 1 2 1.7e-05 0.0012 10.9 0.1 12 88 11 95 3 99 0.81 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_12 - 207 AAA_24 PF13479.1 213 0.00046 12.3 0.6 2 2 0.078 5.7 -1.1 0.0 168 206 118 156 115 164 0.79 # 6211 # 6831 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_6 - 755 UvrD-helicase PF00580.16 315 4.6e-08 25.1 2.7 1 1 6.2e-10 4.6e-08 25.1 2.7 2 288 227 502 226 509 0.76 # 2534 # 4798 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1c54fb9b-1fc2-4d4a-9022-7049b4686408 # Target file: checkm_output/bins/pm1803/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1803/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1c54fb9b-1fc2-4d4a-9022-7049b4686408 checkm_output/bins/pm1803/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:40 2020 # [ok]