# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_3 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 1 2 1.8e-05 0.00079 10.6 0.0 10 38 12 41 3 47 0.86 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 2 2 0.019 0.84 0.7 0.1 114 146 115 147 71 170 0.78 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 MipZ PF09140.6 261 7.7e-15 46.3 0.9 1 2 1.3e-11 5.7e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 MipZ PF09140.6 261 7.7e-15 46.3 0.9 2 2 8.2e-07 3.5e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 DUF1611 PF07755.6 301 1.6e-06 18.6 0.3 1 1 5.8e-08 2.5e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 ATP_bind_1 PF03029.12 238 2e-05 15.9 0.0 1 1 8.4e-07 3.6e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 SRP54 PF00448.17 196 4.5e-05 14.6 0.4 1 1 3.6e-06 0.00015 12.9 0.3 11 54 12 50 2 142 0.73 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_17 PF13207.1 121 3.7e-05 16.3 0.0 1 1 1.1e-06 4.9e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 MobB PF03205.9 140 1.1e-06 20.1 0.4 1 1 1.4e-07 5.8e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 LpxK PF02606.9 326 2.3e-05 15.1 0.1 1 1 8.4e-07 3.6e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 ArsA_ATPase PF02374.10 305 1.2e-08 26.0 0.2 1 1 4.8e-10 2.1e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 VirC1 PF07015.6 231 3.2e-15 47.5 0.2 1 1 1.5e-16 6.4e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 Fer4_NifH PF00142.13 273 6.8e-07 20.4 0.0 1 1 2.8e-08 1.2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 CbiA PF01656.18 195 4.5e-29 92.9 1.6 1 1 2.7e-30 1.1e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_31 PF13614.1 157 7.5e-09 27.4 0.3 1 2 9.4e-09 4e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_31 PF13614.1 157 7.5e-09 27.4 0.3 2 2 0.0047 0.2 3.3 0.0 115 152 74 109 58 114 0.83 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 NTPase_1 PF03266.10 168 0.00016 13.1 0.1 1 1 1.1e-05 0.00049 11.5 0.0 7 58 10 66 5 94 0.80 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_30 PF13604.1 196 0.00015 13.1 0.4 1 1 7.4e-06 0.00032 12.0 0.1 26 106 10 88 2 97 0.75 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_2 - 396 AAA_10 PF12846.2 304 1.2e-36 118.3 0.0 1 1 8.3e-38 1.8e-36 117.8 0.0 3 294 17 303 16 310 0.93 # 274 # 1461 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 3_3 - 207 AAA_10 PF12846.2 304 5.6e-06 17.6 0.0 1 1 4.7e-07 1e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 ArgK PF03308.11 267 4.7e-05 13.9 0.0 1 1 2.5e-06 0.00011 12.7 0.0 39 72 12 45 5 53 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_24 PF13479.1 213 0.00027 12.3 0.6 1 2 1.7e-05 0.00072 10.9 0.1 12 88 11 95 3 99 0.81 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_24 PF13479.1 213 0.00027 12.3 0.6 2 2 0.078 3.3 -1.1 0.0 168 206 118 156 115 164 0.79 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5b7f2df2-0b0c-4312-95a0-117c984dab3d # Target file: checkm_output/bins/pm1802/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1802/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5b7f2df2-0b0c-4312-95a0-117c984dab3d checkm_output/bins/pm1802/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:37 2020 # [ok]