# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_58 - 260 IstB_IS21 PF01695.12 178 7.1e-66 213.6 0.0 1 1 2.2e-67 1.8e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 145 SSB PF00436.20 104 6.1e-32 102.3 0.2 1 1 8.4e-34 7e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 2071 # 2505 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_79 - 388 DUF87 PF01935.12 229 7.8e-05 15.2 0.0 1 1 1.8e-06 0.00015 14.2 0.0 28 45 157 174 155 188 0.89 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_22 PF13401.1 131 1e-06 21.6 0.0 1 2 1.2e-05 0.00034 13.4 0.1 4 28 101 125 98 148 0.75 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_22 PF13401.1 131 1e-06 21.6 0.0 2 2 0.0025 0.068 6.0 0.0 77 101 151 178 124 201 0.64 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_22 PF13401.1 131 3.5e-06 19.9 0.0 1 1 2.9e-07 8e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 1017 AAA_22 PF13401.1 131 0.00032 13.5 0.0 1 1 3.5e-05 0.00098 11.9 0.0 8 69 492 557 486 594 0.67 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_79 - 388 ATP_bind_1 PF03029.12 238 0.00068 11.8 0.0 1 1 1.3e-05 0.0011 11.2 0.0 1 25 157 181 157 191 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 1017 AAA_17 PF13207.1 121 3.8e-05 17.2 0.0 1 1 5.8e-06 0.00024 14.6 0.0 3 28 492 523 492 587 0.67 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 260 AAA_17 PF13207.1 121 0.00032 14.2 0.0 1 1 1.3e-05 0.00054 13.4 0.0 2 26 104 131 103 216 0.74 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 Miro PF08477.8 119 0.00078 12.6 0.0 1 1 2.1e-05 0.0018 11.5 0.0 4 28 157 186 156 220 0.72 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 MobB PF03205.9 140 0.00044 12.6 0.0 1 1 1e-05 0.00086 11.7 0.0 4 25 156 177 154 190 0.85 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 PhoH PF02562.11 205 2.6e-07 22.7 0.1 1 1 5e-09 4.1e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AFG1_ATPase PF03969.11 362 0.00025 12.5 0.0 1 1 5.8e-06 0.00048 11.6 0.0 64 214 103 251 81 258 0.78 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 T2SE PF00437.15 272 1.8e-23 75.4 0.0 1 1 3.4e-25 2.8e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 SMC_N PF02463.14 220 0.00084 11.2 0.0 1 1 1.8e-05 0.0015 10.4 0.0 25 50 153 178 146 195 0.81 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_16 PF13191.1 185 1.2e-05 18.0 2.4 1 2 2.4e-06 9.9e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_16 PF13191.1 185 1.2e-05 18.0 2.4 2 2 0.071 2.9 0.4 0.0 124 162 143 175 125 192 0.74 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_16 PF13191.1 185 0.00053 12.6 0.0 1 1 2.5e-05 0.001 11.7 0.0 25 50 153 178 141 211 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 AAA_23 PF13476.1 202 2e-06 20.9 0.8 1 1 3.9e-08 3.2e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 1017 AAA_18 PF13238.1 129 4.1e-05 16.5 0.1 1 1 4.2e-06 0.00035 13.6 0.0 2 19 492 509 492 562 0.79 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 260 CbiA PF01656.18 195 0.0008 11.5 0.0 1 1 1.3e-05 0.001 11.1 0.0 3 42 105 145 104 254 0.75 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 KaiC PF06745.8 227 0.00064 11.5 0.0 1 1 1.4e-05 0.0011 10.7 0.0 11 59 144 191 137 201 0.76 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_14 PF13173.1 128 2.9e-07 23.1 0.0 1 2 1.7e-08 1.4e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_14 PF13173.1 128 2.9e-07 23.1 0.0 2 2 0.048 4 0.0 0.0 14 46 215 247 212 257 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_29 PF13555.1 62 7e-06 18.2 0.1 1 1 2e-07 1.7e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA PF00004.24 132 1.8e-08 27.3 0.0 1 1 4.1e-10 3.4e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 Bac_DnaA PF00308.13 219 4.3e-09 28.9 0.0 1 1 7.8e-11 6.4e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 DUF258 PF03193.11 161 0.00018 13.4 0.0 1 1 3.7e-06 0.0003 12.6 0.0 26 59 92 125 80 153 0.82 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 Ribosomal_S5 PF00333.15 67 2.6e-05 16.6 0.1 1 2 0.00093 0.077 5.5 0.0 26 45 84 103 77 114 0.83 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 Ribosomal_S5 PF00333.15 67 2.6e-05 16.6 0.1 2 2 0.00012 0.0097 8.4 0.0 21 54 242 274 230 278 0.91 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_50 - 696 TraG-D_C PF12696.2 128 0.00011 14.7 0.1 1 1 2.4e-06 0.0002 13.9 0.1 3 94 437 524 435 556 0.78 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_58 - 260 NTPase_1 PF03266.10 168 0.00019 13.8 0.1 1 2 0.0015 0.13 4.6 0.1 2 30 104 132 103 143 0.82 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 NTPase_1 PF03266.10 168 0.00019 13.8 0.1 2 2 0.0003 0.025 6.9 0.0 87 108 155 176 141 202 0.77 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 FtsK_SpoIIIE PF01580.13 205 8.7e-05 14.7 0.0 1 1 2.1e-06 0.00017 13.7 0.0 41 59 155 173 135 184 0.85 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 ABC_tran PF00005.22 137 9.6e-05 15.4 0.0 1 1 4.4e-06 0.00018 14.5 0.0 15 33 156 174 147 217 0.82 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 ABC_tran PF00005.22 137 0.00043 13.2 0.2 1 1 4.1e-05 0.0017 11.3 0.1 8 31 98 121 95 132 0.86 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_66 - 1017 AAA_19 PF13245.1 76 0.00031 13.2 0.0 1 1 2.3e-05 0.00097 11.6 0.0 14 32 492 509 481 523 0.86 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 260 AAA_19 PF13245.1 76 0.00056 12.3 0.2 1 1 5.3e-05 0.0022 10.5 0.0 11 35 103 126 95 157 0.81 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_66 - 1017 AAA_10 PF12846.2 304 6e-42 136.7 0.0 1 1 6e-43 1.2e-41 135.7 0.0 5 297 492 884 489 889 0.94 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_50 - 696 AAA_10 PF12846.2 304 5.2e-10 31.8 0.0 1 1 3.7e-11 7.8e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_79 - 388 AAA_10 PF12846.2 304 1e-06 21.0 0.0 1 1 2.8e-07 5.8e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_10 PF12846.2 304 3.1e-05 16.1 0.2 1 2 0.058 1.2 1.1 0.0 106 155 28 69 4 89 0.61 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_10 PF12846.2 304 3.1e-05 16.1 0.2 2 2 1.8e-05 0.00036 12.6 0.1 3 35 103 135 101 172 0.84 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_66 - 1017 DUF2075 PF09848.4 352 0.00031 12.4 0.0 1 1 1e-05 0.00087 10.9 0.0 5 22 492 509 489 526 0.84 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_50 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 1 3 1.7e-05 0.0014 9.8 0.0 16 36 134 154 125 158 0.88 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_50 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 2 3 9.3e-05 0.0077 7.4 0.1 93 140 235 281 229 303 0.80 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_50 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 3 3 0.083 6.9 -2.3 0.0 293 323 482 512 405 546 0.58 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_58 - 260 Sigma54_activ_2 PF14532.1 138 0.00033 13.4 0.0 1 1 6.3e-06 0.00052 12.7 0.0 9 64 87 144 84 229 0.70 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 GTP_EFTU PF00009.22 188 0.0009 11.3 0.0 1 1 2e-05 0.0016 10.5 0.0 8 34 157 183 155 195 0.87 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 RNA_helicase PF00910.17 107 0.00091 12.1 0.0 1 1 2.5e-05 0.0021 10.9 0.0 3 26 157 180 156 197 0.81 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_24 PF13479.1 213 0.0011 11.2 0.1 1 1 3e-05 0.0025 10.0 0.1 5 23 103 121 99 127 0.85 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 NACHT PF05729.7 166 0.00011 14.6 0.0 1 1 4.1e-06 0.00017 13.9 0.0 3 49 104 151 102 200 0.81 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 NACHT PF05729.7 166 0.00028 13.2 0.0 1 1 1.3e-05 0.00055 12.3 0.0 4 29 156 181 154 188 0.83 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_25 PF13481.1 194 6e-07 21.7 0.1 1 1 4.4e-08 1.8e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_25 PF13481.1 194 4.7e-06 18.8 0.0 1 1 2.3e-07 9.4e-06 17.8 0.0 25 53 144 172 122 178 0.89 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_28 PF13521.1 163 0.00021 13.9 0.0 1 1 5e-06 0.00041 13.0 0.0 1 49 103 156 103 171 0.73 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_5 PF07728.9 139 1.5e-05 17.4 0.0 1 1 4.6e-07 3.8e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2c0f1885-f778-4635-a833-2a8948cb4529 # Target file: checkm_output/bins/pm1801/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1801/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2c0f1885-f778-4635-a833-2a8948cb4529 checkm_output/bins/pm1801/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:39 2020 # [ok]