# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 213 MipZ PF09140.6 261 1.2e-14 44.3 1.4 1 3 8e-11 1.3e-09 27.8 0.1 2 40 3 41 2 54 0.90 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 MipZ PF09140.6 261 1.2e-14 44.3 1.4 2 3 1.1e-05 0.00017 11.0 0.1 96 135 73 112 60 148 0.81 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 MipZ PF09140.6 261 1.2e-14 44.3 1.4 3 3 0.0024 0.038 3.3 0.0 212 254 168 208 158 211 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 YhjQ PF06564.7 244 2.5e-07 20.6 1.1 1 3 7.3e-08 1.2e-06 18.4 0.1 1 41 1 41 1 45 0.94 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 YhjQ PF06564.7 244 2.5e-07 20.6 1.1 2 3 0.075 1.2 -1.3 0.0 112 149 70 107 63 110 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 YhjQ PF06564.7 244 2.5e-07 20.6 1.1 3 3 0.059 0.95 -1.0 0.0 219 233 188 202 182 205 0.86 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 SRP54 PF00448.17 196 1.3e-05 15.0 0.2 1 1 1.4e-06 2.3e-05 14.2 0.2 10 39 11 40 2 89 0.88 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_17 PF13207.1 121 1.7e-07 22.4 0.0 1 1 2e-08 3.2e-07 21.5 0.0 9 78 12 89 11 144 0.63 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 MobB PF03205.9 140 1.4e-05 15.1 0.0 1 1 2.1e-06 3.4e-05 13.9 0.0 10 113 12 96 3 108 0.77 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 LpxK PF02606.9 326 2.2e-05 13.8 0.1 1 1 2.3e-06 3.7e-05 13.0 0.1 37 96 3 60 1 103 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 ArsA_ATPase PF02374.10 305 5.2e-08 22.5 0.0 1 2 1.5e-08 2.4e-07 20.3 0.0 6 45 7 46 1 60 0.89 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 ArsA_ATPase PF02374.10 305 5.2e-08 22.5 0.0 2 2 0.032 0.51 -0.5 0.0 126 141 75 90 66 98 0.81 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 SKI PF01202.17 158 4e-05 13.8 0.1 1 1 4.7e-06 7.5e-05 13.0 0.1 2 22 12 32 11 38 0.91 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 Methyltransf_24 PF13578.1 106 4.1e-05 14.8 0.1 1 1 1.1e-05 0.00017 12.8 0.1 8 84 14 90 11 105 0.74 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 VirC1 PF07015.6 231 2.8e-07 20.1 0.0 1 1 2.8e-08 4.4e-07 19.4 0.0 1 144 1 136 1 209 0.70 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 Fer4_NifH PF00142.13 273 3.4e-06 16.7 0.0 1 2 9.1e-06 0.00015 11.3 0.0 6 39 8 41 2 49 0.88 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 Fer4_NifH PF00142.13 273 3.4e-06 16.7 0.0 2 2 0.0022 0.036 3.5 0.0 149 246 105 205 88 211 0.64 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_16 PF13191.1 185 1e-05 15.9 0.1 1 1 8e-06 0.00013 12.3 0.1 34 70 12 49 10 211 0.88 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 CbiA PF01656.18 195 1.5e-32 102.9 0.3 1 1 2.2e-33 3.5e-32 101.7 0.3 1 174 4 157 4 176 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_31 PF13614.1 157 5.4e-12 36.2 0.1 1 2 1.8e-10 2.8e-09 27.4 0.0 2 41 3 42 2 46 0.93 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_31 PF13614.1 157 5.4e-12 36.2 0.1 2 2 0.00039 0.0063 6.8 0.0 117 154 75 111 65 114 0.79 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 KTI12 PF08433.5 270 0.00013 11.5 0.0 1 1 1.3e-05 0.0002 10.9 0.0 12 45 13 46 6 84 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_19 PF13245.1 76 3.6e-05 13.9 0.7 1 1 1.5e-05 0.00024 11.2 0.0 20 51 12 41 4 57 0.78 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_10 PF12846.2 304 7.4e-05 12.5 0.0 1 1 7.5e-06 0.00012 11.8 0.0 11 47 12 50 10 83 0.91 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 adh_short_C2 PF13561.1 241 4.6e-05 13.5 0.0 1 1 4.4e-06 7.1e-05 12.9 0.0 2 64 12 75 11 133 0.85 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_24 PF13479.1 213 4.7e-06 16.6 0.0 1 1 5.9e-07 9.5e-06 15.6 0.0 11 89 10 96 2 100 0.64 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_25 PF13481.1 194 0.00017 11.3 2.7 1 1 0.00013 0.0021 7.8 1.4 41 154 10 87 2 104 0.54 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 APS_kinase PF01583.15 157 3.6e-05 13.8 0.0 1 1 4.4e-06 7e-05 12.9 0.0 10 39 10 39 2 52 0.90 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b1152f9c-aa9a-4e17-9231-dc02ed53bad3 # Target file: checkm_output/bins/pm1788/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1788/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b1152f9c-aa9a-4e17-9231-dc02ed53bad3 checkm_output/bins/pm1788/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:29 2020 # [ok]