# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_57 - 226 UPF0020 PF01170.13 180 2.7e-06 20.5 0.0 1 2 8.6e-05 0.013 8.5 0.0 102 123 16 37 3 89 0.71 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 226 UPF0020 PF01170.13 180 2.7e-06 20.5 0.0 2 2 2.9e-05 0.0043 10.1 0.0 27 54 162 188 158 216 0.72 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_50 - 289 MipZ PF09140.6 261 1.1e-09 31.1 0.0 1 2 3.1e-06 0.00023 13.7 0.0 2 39 11 48 10 60 0.92 # 42415 # 43281 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_50 - 289 MipZ PF09140.6 261 1.1e-09 31.1 0.0 2 2 9.7e-07 7.2e-05 15.4 0.0 61 127 95 162 86 165 0.82 # 42415 # 43281 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_8 - 185 MipZ PF09140.6 261 2.1e-05 17.2 0.1 1 1 4.1e-07 3.1e-05 16.6 0.0 75 134 21 80 7 117 0.77 # 5084 # 5638 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.423 1_68 - 185 SSB PF00436.20 104 7.1e-43 138.2 0.5 1 1 5.7e-45 8.5e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 54600 # 55154 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_106 - 1768 UvrD_C_2 PF13538.1 104 3.8e-08 26.9 0.1 1 1 1e-09 1.5e-07 25.0 0.1 3 103 1347 1452 1345 1453 0.74 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_119 - 345 Gp_dh_N PF00044.19 151 0.001 12.5 0.1 1 1 2.2e-05 0.0032 10.9 0.1 85 130 231 275 169 292 0.81 # 102196 # 103230 # 1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_92 - 864 DUF87 PF01935.12 229 3.9e-05 17.0 0.0 1 1 9.1e-07 0.00013 15.2 0.0 26 213 477 655 474 670 0.62 # 70362 # 72953 # 1 # ID=1_92;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_90 - 30 SRP54 PF00448.17 196 0.00073 12.5 0.7 1 1 4.9e-06 0.00073 12.5 0.7 3 18 7 22 5 25 0.88 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_57 - 226 N6_N4_Mtase PF01555.13 231 6.1e-37 120.7 0.0 1 1 1.7e-36 2.4e-34 112.2 0.0 1 228 21 200 21 203 0.90 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_119 - 345 ADH_zinc_N_2 PF13602.1 127 3.6e-08 27.8 0.0 1 1 4.2e-10 6.3e-08 27.1 0.0 8 119 219 332 206 334 0.80 # 102196 # 103230 # 1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_105 - 764 MobB PF03205.9 140 0.00017 14.7 0.1 1 1 6.4e-06 0.00047 13.3 0.1 6 34 210 238 206 243 0.87 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_90 - 30 MobB PF03205.9 140 0.001 12.3 0.6 1 1 1.4e-05 0.0011 12.2 0.6 3 17 8 22 6 24 0.89 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_119 - 345 ADH_zinc_N PF00107.21 130 1.3e-20 66.8 0.0 1 1 1.3e-22 1.9e-20 66.2 0.0 2 129 177 303 176 304 0.96 # 102196 # 103230 # 1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_90 - 30 T2SE PF00437.15 272 4.3e-05 15.9 0.5 1 1 3e-07 4.5e-05 15.9 0.5 127 147 4 24 2 26 0.86 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_90 - 30 Zeta_toxin PF06414.7 201 0.0024 10.4 0.6 1 1 1.8e-05 0.0026 10.3 0.6 16 34 4 23 2 25 0.75 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_9 - 48 VirC1 PF07015.6 231 0.00042 12.9 0.0 1 1 2.9e-06 0.00042 12.9 0.0 1 29 1 29 1 39 0.85 # 5580 # 5723 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_105 - 764 Arch_ATPase PF01637.13 234 0.00024 14.3 0.0 1 1 3.1e-06 0.00047 13.3 0.0 27 82 211 260 201 333 0.83 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_105 - 764 AAA_16 PF13191.1 185 1.9e-05 18.2 0.0 1 1 8.5e-07 6.3e-05 16.5 0.0 22 120 202 298 198 341 0.65 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_92 - 864 AAA_16 PF13191.1 185 0.00022 14.7 0.0 1 1 1.4e-05 0.001 12.5 0.0 26 56 476 507 461 590 0.87 # 70362 # 72953 # 1 # ID=1_92;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_90 - 30 AAA_23 PF13476.1 202 0.003 11.3 1.1 1 1 2.3e-05 0.0034 11.1 1.1 25 36 11 22 11 24 0.89 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_144 - 187 AAA_13 PF13166.1 712 0.00012 14.1 0.1 1 1 9.8e-07 0.00014 13.8 0.1 362 441 6 85 1 101 0.89 # 125483 # 126043 # -1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.592 1_50 - 289 CbiA PF01656.18 195 7.7e-18 58.0 0.0 1 1 1.4e-19 1e-17 57.6 0.0 1 160 12 203 12 229 0.80 # 42415 # 43281 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_9 - 48 CbiA PF01656.18 195 2.2e-06 20.6 0.1 1 1 3.2e-08 2.4e-06 20.5 0.1 1 36 4 34 4 39 0.81 # 5580 # 5723 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_90 - 30 AAA_29 PF13555.1 62 0.00013 14.9 0.2 1 1 9.1e-07 0.00013 14.9 0.2 24 42 6 24 1 26 0.81 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_106 - 1768 AAA PF00004.24 132 2.4e-05 18.0 0.4 1 3 0.042 6.2 0.5 0.0 53 90 102 141 86 165 0.70 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_106 - 1768 AAA PF00004.24 132 2.4e-05 18.0 0.4 2 3 0.00034 0.051 7.3 0.0 3 74 992 1080 990 1091 0.56 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_106 - 1768 AAA PF00004.24 132 2.4e-05 18.0 0.4 3 3 0.0018 0.27 4.9 0.1 29 99 1625 1695 1586 1728 0.74 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_126 - 234 PAPS_reduct PF01507.14 174 1.2e-09 31.6 0.3 1 2 0.0021 0.31 4.3 0.1 26 51 6 31 1 54 0.88 # 110182 # 110883 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_126 - 234 PAPS_reduct PF01507.14 174 1.2e-09 31.6 0.3 2 2 5.8e-10 8.5e-08 25.6 0.0 99 164 107 184 69 185 0.83 # 110182 # 110883 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507 1_78 - 278 N6_Mtase PF02384.11 311 1.7e-10 33.9 0.0 1 1 1.8e-12 2.7e-10 33.2 0.0 25 117 139 237 130 247 0.86 # 61333 # 62166 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_105 - 764 TraG-D_C PF12696.2 128 1.1e-20 67.3 0.0 1 1 1.4e-22 2e-20 66.4 0.0 1 127 439 561 439 562 0.85 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_50 - 289 AAA_31 PF13614.1 157 1.4e-06 21.8 0.0 1 1 3.9e-08 5.8e-06 19.8 0.0 1 135 10 151 10 171 0.82 # 42415 # 43281 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_57 - 226 Methyltransf_26 PF13659.1 117 5e-12 39.4 0.1 1 2 3.9e-07 2.9e-05 17.6 0.0 53 111 3 68 2 85 0.74 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 226 Methyltransf_26 PF13659.1 117 5e-12 39.4 0.1 2 2 8.1e-08 6e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_78 - 278 Methyltransf_26 PF13659.1 117 0.00069 13.1 0.0 1 1 5.3e-05 0.0039 10.7 0.0 3 62 171 237 169 263 0.81 # 61333 # 62166 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_106 - 1768 AAA_30 PF13604.1 196 4.3e-43 140.6 16.0 1 2 0.00011 0.016 8.2 1.2 9 127 434 546 432 564 0.77 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_106 - 1768 AAA_30 PF13604.1 196 4.3e-43 140.6 16.0 2 2 7.5e-45 1.1e-42 139.3 3.5 2 186 971 1158 970 1162 0.91 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_90 - 30 FtsK_SpoIIIE PF01580.13 205 0.0007 12.5 1.0 1 1 4.9e-06 0.00073 12.5 1.0 38 55 5 22 2 24 0.86 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_92 - 864 ABC_tran PF00005.22 137 0.0012 12.6 0.0 1 1 2e-05 0.003 11.3 0.0 13 96 476 599 472 615 0.61 # 70362 # 72953 # 1 # ID=1_92;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_57 - 226 Cons_hypoth95 PF03602.10 183 9.9e-06 18.5 0.0 1 2 0.00016 0.024 7.5 0.0 112 168 18 76 2 83 0.69 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 226 Cons_hypoth95 PF03602.10 183 9.9e-06 18.5 0.0 2 2 5e-05 0.0073 9.1 0.0 41 62 162 183 145 213 0.80 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_106 - 1768 AAA_19 PF13245.1 76 8.4e-08 25.4 1.4 1 2 0.045 6.7 0.1 0.0 20 60 450 490 434 501 0.75 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_106 - 1768 AAA_19 PF13245.1 76 8.4e-08 25.4 1.4 2 2 9.9e-09 1.5e-06 21.4 0.3 8 76 984 1049 977 1049 0.78 # 87398 # 92701 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_92 - 864 AAA_10 PF12846.2 304 1.1e-44 146.5 0.0 1 1 4.7e-46 2.3e-44 145.4 0.0 1 291 474 760 474 767 0.89 # 70362 # 72953 # 1 # ID=1_92;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_105 - 764 AAA_10 PF12846.2 304 1.1e-15 51.3 0.0 1 1 5.4e-16 2.7e-14 46.7 0.0 3 302 206 520 205 522 0.77 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_90 - 30 AAA_10 PF12846.2 304 0.0011 11.9 0.4 1 1 2.2e-05 0.0011 11.9 0.4 2 18 6 22 5 25 0.91 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_144 - 187 DUF3584 PF12128.3 1201 0.00018 12.4 3.1 1 1 1.6e-06 0.00024 11.9 3.1 304 377 12 86 5 100 0.86 # 125483 # 126043 # -1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.592 1_115 - 292 FMO-like PF00743.14 532 1.7e-10 33.1 0.0 1 1 1.4e-12 2e-10 32.9 0.0 276 426 40 187 2 201 0.78 # 99679 # 100554 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_90 - 30 DEAD PF00270.24 169 0.00031 13.7 0.2 1 1 2.1e-06 0.00031 13.7 0.2 14 30 5 21 1 27 0.86 # 69630 # 69719 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_105 - 764 TrwB_AAD_bind PF10412.4 386 1e-147 485.2 0.0 1 1 1.7e-149 1.3e-147 484.9 0.0 2 385 191 580 190 581 0.99 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_92 - 864 TrwB_AAD_bind PF10412.4 386 5.5e-05 15.3 0.0 1 1 1.5e-06 0.00011 14.4 0.0 16 71 475 536 470 545 0.79 # 70362 # 72953 # 1 # ID=1_92;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_74 - 383 TIGR00344 TIGR00344 847 3.1e-05 15.5 0.5 1 1 6.3e-07 4.6e-05 14.9 0.5 682 777 163 255 154 269 0.76 # 58221 # 59369 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_67 - 402 TIGR00344 TIGR00344 847 5.4e-05 14.7 0.9 1 1 1.1e-06 7.8e-05 14.1 0.9 683 778 189 281 178 301 0.77 # 52744 # 53949 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_105 - 764 T4SS-DNA_transf PF02534.9 469 4.6e-13 41.9 0.0 1 1 8.4e-14 1.2e-11 37.2 0.0 141 390 291 524 245 575 0.76 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_57 - 226 MethyltransfD12 PF02086.10 260 0.00037 13.4 0.0 1 2 0.013 1.9 1.3 0.0 176 188 19 31 12 92 0.81 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 226 MethyltransfD12 PF02086.10 260 0.00037 13.4 0.0 2 2 2.8e-05 0.0041 10.0 0.0 20 46 163 189 148 197 0.79 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_105 - 764 GTP_EFTU PF00009.22 188 6.2e-05 15.9 0.0 1 2 2.7e-05 0.004 10.0 0.0 2 28 203 229 202 251 0.90 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_105 - 764 GTP_EFTU PF00009.22 188 6.2e-05 15.9 0.0 2 2 0.0028 0.42 3.4 0.0 51 85 354 386 331 394 0.89 # 85107 # 87398 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_57 - 226 Methyltransf_15 PF09445.5 164 0.0016 11.5 0.0 1 2 0.035 5.1 0.1 0.0 53 79 4 29 2 33 0.90 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 226 Methyltransf_15 PF09445.5 164 0.0016 11.5 0.0 2 2 7.1e-05 0.01 8.8 0.0 3 31 166 194 164 207 0.86 # 48015 # 48692 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/35f4e36c-702a-4a9b-aff4-9b9e99d4d7f7 # Target file: checkm_output/bins/pm1778/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1778/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/35f4e36c-702a-4a9b-aff4-9b9e99d4d7f7 checkm_output/bins/pm1778/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:24 2020 # [ok]