# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_27 - 234 UPF0020 PF01170.13 180 5.7e-06 19.6 0.0 1 2 0.0001 0.0082 9.3 0.0 103 120 17 34 5 80 0.83 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_27 - 234 UPF0020 PF01170.13 180 5.7e-06 19.6 0.0 2 2 0.00019 0.015 8.4 0.0 28 51 170 193 165 227 0.75 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_39 - 188 UPF0020 PF01170.13 180 2e-05 17.8 0.0 1 1 1.5e-06 0.00012 15.3 0.0 19 54 41 78 39 138 0.74 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 9_3 - 181 cobW PF02492.14 178 0.0012 11.9 0.0 1 1 1.3e-05 0.0021 11.1 0.0 2 21 2 21 1 29 0.81 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_39 - 188 RrnaAD PF00398.15 262 4.1e-07 22.8 0.0 1 1 3.4e-09 5.5e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 5_1 - 193 DUF1776 PF08643.5 299 6.8e-05 15.7 0.0 1 1 5.8e-07 9.5e-05 15.2 0.0 107 196 42 125 36 129 0.85 # 278 # 856 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_20 - 209 MipZ PF09140.6 261 2.7e-21 69.3 0.5 1 2 1.2e-12 1.9e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 MipZ PF09140.6 261 2.7e-21 69.3 0.5 2 2 1.6e-12 2.6e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 YhjQ PF06564.7 244 3.8e-05 16.7 0.3 1 2 1.8e-06 0.00029 13.8 0.3 4 38 3 37 1 50 0.89 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 YhjQ PF06564.7 244 3.8e-05 16.7 0.3 2 2 0.029 4.7 0.0 0.0 108 144 69 103 44 113 0.78 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 4_1 - 181 SSB PF00436.20 104 6.7e-42 135.2 0.3 1 1 5.1e-44 8.3e-42 134.9 0.3 1 99 6 105 6 113 0.97 # 271 # 813 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_39 - 188 Methyltransf_18 PF12847.2 112 1.6e-07 25.5 0.0 1 1 1.6e-09 2.6e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_12 - 1753 UvrD_C_2 PF13538.1 104 1.2e-07 25.4 0.2 1 1 4.8e-09 7.8e-07 22.8 0.0 3 102 1339 1442 1335 1444 0.76 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_32 - 880 DUF87 PF01935.12 229 7.5e-06 19.5 0.0 1 2 0.056 9 -0.4 0.2 113 171 312 362 304 396 0.60 # 29364 # 32003 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_32 - 880 DUF87 PF01935.12 229 7.5e-06 19.5 0.0 2 2 3e-07 4.9e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 29364 # 32003 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 9_3 - 181 AAA_22 PF13401.1 131 2.5e-05 18.0 0.0 1 1 9.4e-07 7.6e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1753 AAA_22 PF13401.1 131 0.00039 14.2 0.0 1 2 0.012 0.94 3.2 0.0 89 121 504 535 469 537 0.72 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 1753 AAA_22 PF13401.1 131 0.00039 14.2 0.0 2 2 0.00079 0.064 7.0 0.0 3 28 985 1010 982 1063 0.79 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 6_2 - 478 DNA_methylase PF00145.12 335 3.6e-79 259.8 0.0 1 1 4.4e-81 7.2e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 394 # 1827 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 2_20 - 209 SRP54 PF00448.17 196 4.1e-07 23.2 0.1 1 1 1.5e-08 2.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_27 - 234 N6_N4_Mtase PF01555.13 231 1.9e-32 106.2 0.0 1 2 6.8e-13 1.1e-10 34.9 0.0 1 113 21 130 21 137 0.85 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_27 - 234 N6_N4_Mtase PF01555.13 231 1.9e-32 106.2 0.0 2 2 2e-23 3.2e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 9_3 - 181 AAA_17 PF13207.1 121 3.8e-06 21.3 0.0 1 1 1.4e-07 7.8e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_20 - 209 AAA_17 PF13207.1 121 3.5e-05 18.2 0.0 1 1 1.3e-06 6.9e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_13 - 771 AAA_17 PF13207.1 121 0.0027 12.1 0.7 1 1 0.00013 0.007 10.8 0.1 3 37 189 221 187 355 0.74 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_20 - 209 MobB PF03205.9 140 9.6e-05 15.7 0.1 1 1 1.6e-06 0.00026 14.3 0.0 10 42 11 41 1 46 0.79 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 ArsA_ATPase PF02374.10 305 5e-08 25.8 0.4 1 2 1.2e-09 1.9e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 ArsA_ATPase PF02374.10 305 5e-08 25.8 0.4 2 2 0.053 8.7 -1.2 0.0 121 135 69 85 47 86 0.75 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 9_3 - 181 Cytidylate_kin2 PF13189.1 179 0.0016 11.9 0.0 1 2 9.1e-05 0.015 8.8 0.0 1 22 2 23 2 44 0.81 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 Cytidylate_kin2 PF13189.1 179 0.0016 11.9 0.0 2 2 0.026 4.3 0.8 0.0 110 135 96 122 94 136 0.74 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 Zeta_toxin PF06414.7 201 0.00013 14.7 0.0 1 2 2.1e-05 0.0034 10.1 0.0 19 50 3 32 1 39 0.78 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 Zeta_toxin PF06414.7 201 0.00013 14.7 0.0 2 2 0.0045 0.73 2.4 0.0 94 123 73 102 57 160 0.77 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_20 - 209 VirC1 PF07015.6 231 4.5e-09 29.3 0.0 1 1 5.9e-11 9.6e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 Fer4_NifH PF00142.13 273 0.00012 14.9 0.0 1 1 2.3e-06 0.00037 13.3 0.0 8 38 9 39 2 46 0.89 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_13 - 771 AAA_16 PF13191.1 185 4.5e-06 20.3 0.0 1 1 1.4e-07 2.3e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 9_3 - 181 AAA_18 PF13238.1 129 3.2e-09 30.8 0.0 1 1 3.9e-11 6.3e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_1 - 193 adh_short PF00106.20 167 5.2e-21 68.8 0.0 1 1 4e-23 6.5e-21 68.5 0.0 57 166 3 115 1 116 0.97 # 278 # 856 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_20 - 209 CbiA PF01656.18 195 3.9e-22 72.2 0.0 1 1 4.7e-24 7.7e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_39 - 188 N6_Mtase PF02384.11 311 0.00016 14.4 0.0 1 2 2.6e-05 0.0043 9.7 0.0 28 71 32 75 21 93 0.82 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_39 - 188 N6_Mtase PF02384.11 311 0.00016 14.4 0.0 2 2 0.0056 0.91 2.0 0.0 124 138 111 125 95 133 0.81 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_13 - 771 TraG-D_C PF12696.2 128 1.5e-19 63.7 0.0 1 1 2.2e-21 3.5e-19 62.5 0.0 1 127 419 541 419 542 0.88 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_20 - 209 AAA_31 PF13614.1 157 6.9e-06 19.7 0.0 1 2 2.5e-07 4.1e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 AAA_31 PF13614.1 157 6.9e-06 19.7 0.0 2 2 0.055 8.9 -0.2 0.0 109 127 68 86 62 113 0.68 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 9_3 - 181 AAA_33 PF13671.1 143 4.9e-10 33.0 0.0 1 1 4.3e-12 6.9e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_39 - 188 Methyltransf_26 PF13659.1 117 3e-13 43.5 0.1 1 1 5.9e-15 4.8e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_27 - 234 Methyltransf_26 PF13659.1 117 4.3e-11 36.5 0.2 1 2 6.4e-07 5.2e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_27 - 234 Methyltransf_26 PF13659.1 117 4.3e-11 36.5 0.2 2 2 3.9e-07 3.2e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_12 - 1753 AAA_30 PF13604.1 196 1.1e-44 145.9 5.7 1 2 9.8e-07 0.00016 14.9 0.7 9 126 423 535 421 561 0.84 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 1753 AAA_30 PF13604.1 196 1.1e-44 145.9 5.7 2 2 1.4e-42 2.2e-40 131.9 0.4 2 186 970 1157 969 1161 0.94 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_32 - 880 FtsK_SpoIIIE PF01580.13 205 0.00018 14.6 0.0 1 1 2.7e-06 0.00044 13.3 0.0 39 63 480 506 466 508 0.85 # 29364 # 32003 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_39 - 188 MTS PF05175.9 170 1.8e-09 30.8 0.0 1 1 1.5e-11 2.4e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 2_27 - 234 Cons_hypoth95 PF03602.10 183 6.5e-06 19.2 0.0 1 2 0.00016 0.026 7.4 0.0 113 169 19 77 12 86 0.70 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_27 - 234 Cons_hypoth95 PF03602.10 183 6.5e-06 19.2 0.0 2 2 3.1e-05 0.0051 9.8 0.0 20 60 149 188 142 225 0.73 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_12 - 1753 AAA_19 PF13245.1 76 3.7e-06 20.3 0.5 1 1 6.8e-08 3.7e-06 20.3 0.5 8 74 983 1046 975 1049 0.71 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 9_3 - 181 AAA_19 PF13245.1 76 0.00069 13.0 0.0 1 1 5.3e-05 0.0028 11.0 0.0 15 33 5 22 2 36 0.85 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_20 - 209 AAA_19 PF13245.1 76 0.00091 12.6 0.1 1 2 0.00029 0.016 8.6 0.0 20 48 11 35 9 44 0.84 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_20 - 209 AAA_19 PF13245.1 76 0.00091 12.6 0.1 2 2 0.067 3.6 1.1 0.0 42 62 135 155 118 180 0.75 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_39 - 188 Methyltransf_2 PF00891.13 242 0.0019 11.0 0.0 1 1 1.7e-05 0.0028 10.4 0.0 111 159 60 110 40 119 0.83 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_32 - 880 AAA_10 PF12846.2 304 1.3e-45 149.7 0.0 1 1 5e-47 2e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 29364 # 32003 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_13 - 771 AAA_10 PF12846.2 304 2.5e-09 30.5 0.0 1 1 1.8e-08 7.4e-07 22.4 0.0 3 296 187 494 186 499 0.63 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_20 - 209 AAA_10 PF12846.2 304 0.00025 14.1 0.0 1 1 1e-05 0.00041 13.4 0.0 11 39 11 39 3 67 0.90 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_14 - 134 AAA_10 PF12846.2 304 0.0011 12.0 0.0 1 2 0.00022 0.0089 9.0 0.0 240 264 13 37 6 47 0.89 # 6952 # 7353 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 2_14 - 134 AAA_10 PF12846.2 304 0.0011 12.0 0.0 2 2 0.055 2.2 1.1 0.0 209 235 106 130 70 132 0.72 # 6952 # 7353 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 5_1 - 193 adh_short_C2 PF13561.1 241 5.7e-22 72.2 0.0 1 1 3.9e-24 6.3e-22 72.1 0.0 49 239 3 188 1 190 0.95 # 278 # 856 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_14 - 134 Zot PF05707.7 193 0.00066 12.7 0.0 1 1 7.9e-06 0.0013 11.8 0.0 103 127 12 37 2 48 0.78 # 6952 # 7353 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_13 - 771 TrwB_AAD_bind PF10412.4 386 1.7e-148 487.9 0.0 1 1 2.6e-150 2.1e-148 487.5 0.0 2 386 172 561 171 561 0.99 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_32 - 880 TrwB_AAD_bind PF10412.4 386 2.5e-05 16.6 0.2 1 1 8e-07 6.5e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 29364 # 32003 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1753 AAA_11 PF13086.1 236 4.1e-06 20.1 0.1 1 3 9.3e-07 0.00015 15.0 0.0 2 72 970 1037 969 1064 0.82 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 1753 AAA_11 PF13086.1 236 4.1e-06 20.1 0.1 2 3 0.044 7.2 -0.4 0.0 206 232 1083 1107 1043 1109 0.73 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 1753 AAA_11 PF13086.1 236 4.1e-06 20.1 0.1 3 3 0.033 5.4 0.1 0.0 3 34 1181 1211 1179 1330 0.69 # 7073 # 12331 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_13 - 771 T4SS-DNA_transf PF02534.9 469 3.1e-08 26.1 0.0 1 2 0.08 13 -2.3 0.0 130 199 262 330 253 360 0.69 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_13 - 771 T4SS-DNA_transf PF02534.9 469 3.1e-08 26.1 0.0 2 2 4.6e-10 7.4e-08 24.9 0.0 274 392 392 506 361 559 0.74 # 12331 # 14643 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_39 - 188 TIGR00755 TIGR00755 256 1e-07 24.7 0.0 1 1 9e-10 1.5e-07 24.2 0.0 8 105 29 123 26 128 0.90 # 24839 # 25402 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_32 - 880 Pox_A32 PF04665.7 241 0.00012 15.0 0.0 1 1 1.5e-06 0.00025 14.0 0.0 6 40 474 508 470 523 0.82 # 29364 # 32003 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 9_3 - 181 AAA_24 PF13479.1 213 0.00016 14.9 0.0 1 1 1.2e-06 0.0002 14.5 0.0 6 33 3 34 1 99 0.87 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 NACHT PF05729.7 166 0.00013 15.2 0.1 1 1 2.1e-06 0.00034 13.9 0.0 2 21 2 21 1 29 0.91 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_20 - 209 AAA_25 PF13481.1 194 0.00021 14.3 0.1 1 1 3.1e-06 0.0005 13.1 0.0 42 87 10 44 3 90 0.78 # 10447 # 11073 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_27 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 1 2 0.023 3.7 0.6 0.0 53 80 4 30 2 38 0.91 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_27 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 2 2 7e-05 0.011 8.8 0.0 3 30 173 200 171 213 0.90 # 17296 # 17997 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 9_3 - 181 AAA_28 PF13521.1 163 0.00025 14.6 0.0 1 1 4.7e-06 0.00076 13.0 0.0 2 29 3 33 2 58 0.77 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 APS_kinase PF01583.15 157 2.1e-05 17.8 0.0 1 2 1e-05 0.0017 11.6 0.0 4 24 2 22 1 30 0.89 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 APS_kinase PF01583.15 157 2.1e-05 17.8 0.0 2 2 0.0021 0.34 4.1 0.1 34 72 107 147 91 157 0.86 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ffdceb33-649a-4fc5-9cb4-259442352e2a # Target file: checkm_output/bins/pm1770/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1770/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ffdceb33-649a-4fc5-9cb4-259442352e2a checkm_output/bins/pm1770/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:19 2020 # [ok]