# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 254 UPF0020 PF01170.13 180 2.4e-05 12.9 0.0 1 2 2.8e-05 0.00017 10.1 0.0 78 123 74 119 70 141 0.86 # 178 # 939 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_1 - 254 UPF0020 PF01170.13 180 2.4e-05 12.9 0.0 2 2 0.034 0.21 0.1 0.0 124 154 153 183 149 195 0.85 # 178 # 939 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_1 - 254 N6_N4_Mtase PF01555.13 231 1.4e-10 30.0 0.1 1 1 3.8e-11 2.3e-10 29.2 0.1 3 114 105 246 103 253 0.78 # 178 # 939 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_1 - 254 Methyltransf_26 PF13659.1 117 2.2e-07 19.9 0.4 1 1 9.1e-08 5.5e-07 18.6 0.2 58 113 92 178 76 182 0.77 # 178 # 939 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e92da9c8-bd3b-4f4b-9cba-85196f2c8ab9 # Target file: checkm_output/bins/pm1769/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1769/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e92da9c8-bd3b-4f4b-9cba-85196f2c8ab9 checkm_output/bins/pm1769/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:17 2020 # [ok]