# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 170 Limkain-b1 PF11608.3 91 0.00051 12.8 0.1 1 1 8.7e-06 0.00094 12.0 0.1 16 70 90 144 80 151 0.89 # 5368 # 5877 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 2_11 - 181 cobW PF02492.14 178 0.00091 11.7 0.0 1 1 1.3e-05 0.0014 11.1 0.0 2 22 2 22 1 30 0.79 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_46 - 145 SSB PF00436.20 104 3.6e-32 103.4 0.2 1 1 3.8e-34 4.1e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 26050 # 26484 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_55 - 388 DUF87 PF01935.12 229 9.9e-05 15.2 0.0 1 1 1.8e-06 0.0002 14.2 0.0 28 45 157 174 155 188 0.89 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 AAA_22 PF13401.1 131 3.1e-06 20.4 0.0 1 1 2.1e-07 7.7e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 AAA_22 PF13401.1 131 1.8e-05 17.9 0.0 1 1 9.9e-07 3.6e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_68 - 1017 AAA_22 PF13401.1 131 0.00021 14.4 0.0 1 1 2e-05 0.00072 12.7 0.0 8 73 492 561 486 594 0.70 # 43531 # 46581 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_55 - 388 ATP_bind_1 PF03029.12 238 0.00088 11.8 0.0 1 1 1.3e-05 0.0014 11.2 0.0 1 25 157 181 157 191 0.84 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 AAA_17 PF13207.1 121 6.6e-07 23.2 0.1 1 1 2.3e-08 1.3e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_68 - 1017 AAA_17 PF13207.1 121 5.4e-05 17.0 0.1 1 1 8.5e-06 0.00046 14.0 0.0 3 27 492 522 492 581 0.72 # 43531 # 46581 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_55 - 388 Miro PF08477.8 119 0.001 12.6 0.0 1 1 2.1e-05 0.0023 11.5 0.0 4 28 157 186 156 220 0.72 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 MobB PF03205.9 140 0.00054 12.7 0.0 1 1 1e-05 0.0011 11.7 0.0 4 25 156 177 154 190 0.85 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 T2SE PF00437.15 272 3.1e-23 75.0 0.0 1 1 4.6e-25 5e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 Cytidylate_kin2 PF13189.1 179 0.0005 13.0 0.0 1 2 6.6e-05 0.0071 9.3 0.0 1 23 2 24 2 46 0.78 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 Cytidylate_kin2 PF13189.1 179 0.0005 13.0 0.0 2 2 0.015 1.6 1.6 0.0 112 135 99 122 91 136 0.77 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 Zeta_toxin PF06414.7 201 4.9e-05 15.5 0.0 1 2 4.7e-06 0.00051 12.2 0.0 19 53 3 35 1 120 0.83 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 Zeta_toxin PF06414.7 201 4.9e-05 15.5 0.0 2 2 0.024 2.6 0.1 0.0 45 74 106 133 95 150 0.73 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_55 - 388 SMC_N PF02463.14 220 0.0013 11.0 0.0 1 1 2.1e-05 0.0023 10.2 0.0 26 50 154 178 147 195 0.81 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 AAA_16 PF13191.1 185 0.00095 12.2 0.0 1 1 1.8e-05 0.0019 11.2 0.0 26 50 154 178 140 211 0.85 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 AAA_23 PF13476.1 202 2.1e-06 21.2 0.1 1 1 4.2e-08 4.5e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 AAA_18 PF13238.1 129 7.3e-11 35.5 0.0 1 1 2.4e-12 1.3e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_68 - 1017 AAA_18 PF13238.1 129 9.2e-05 15.8 1.3 1 1 7.1e-06 0.00038 13.8 0.0 2 19 492 509 492 571 0.76 # 43531 # 46581 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_55 - 388 KaiC PF06745.8 227 0.00091 11.4 0.0 1 1 1.5e-05 0.0016 10.6 0.0 14 59 147 191 137 201 0.76 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 AAA_14 PF13173.1 128 0.00064 12.7 0.0 1 1 1.1e-05 0.0012 11.7 0.0 4 27 2 25 1 54 0.79 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_55 - 388 AAA_29 PF13555.1 62 9.6e-06 18.1 0.1 1 1 2.2e-07 2.4e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 Ribosomal_S5 PF00333.15 67 3.3e-05 16.7 0.1 1 2 0.00091 0.098 5.5 0.0 26 45 84 103 76 114 0.83 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 Ribosomal_S5 PF00333.15 67 3.3e-05 16.7 0.1 2 2 0.00012 0.013 8.4 0.0 21 54 242 274 230 278 0.91 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_5 - 696 TraG-D_C PF12696.2 128 0.00015 14.7 0.1 1 1 2.4e-06 0.00026 13.9 0.1 3 94 437 524 435 556 0.78 # 3233 # 5320 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_11 - 181 AAA_33 PF13671.1 143 6.2e-11 35.4 0.0 1 1 7.3e-13 7.9e-11 35.0 0.0 2 127 3 130 2 151 0.75 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_55 - 388 FtsK_SpoIIIE PF01580.13 205 0.00011 14.8 0.0 1 1 1.9e-06 0.00021 13.8 0.0 41 59 155 173 129 184 0.85 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 ABC_tran PF00005.22 137 0.00015 15.1 0.0 1 1 2.7e-06 0.00029 14.2 0.0 16 33 157 174 149 217 0.83 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 TIGR03263 TIGR03263 180 0.00078 11.8 0.0 1 1 1.6e-05 0.0017 10.7 0.0 3 26 2 25 1 31 0.81 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 AAA_19 PF13245.1 76 0.00025 13.8 0.0 1 1 1.6e-05 0.00088 12.1 0.0 15 33 5 22 2 38 0.84 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_68 - 1017 AAA_19 PF13245.1 76 0.00055 12.7 0.0 1 1 3.2e-05 0.0017 11.1 0.0 14 31 492 508 481 518 0.90 # 43531 # 46581 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_68 - 1017 AAA_10 PF12846.2 304 9.4e-41 133.1 0.0 1 1 5.5e-42 2e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 43531 # 46581 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 2_5 - 696 AAA_10 PF12846.2 304 6.8e-10 31.8 0.0 1 1 2.8e-11 1e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 3233 # 5320 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_55 - 388 AAA_10 PF12846.2 304 1.6e-06 20.8 0.0 1 1 2.5e-07 8.9e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_68 - 1017 DUF2075 PF09848.4 352 0.00038 12.5 0.0 1 1 1.1e-05 0.0012 10.8 0.0 5 22 492 509 489 537 0.87 # 43531 # 46581 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_36 - 287 Methyltransf_27 PF13708.1 194 2.1e-69 225.9 0.0 1 1 3.3e-71 3.5e-69 225.2 0.0 2 194 89 282 88 282 0.98 # 21522 # 22382 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_5 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 1 3 1.7e-05 0.0019 9.8 0.0 16 36 134 154 125 158 0.88 # 3233 # 5320 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_5 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 2 3 9.3e-05 0.01 7.4 0.1 93 140 235 281 229 303 0.80 # 3233 # 5320 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_5 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 3 3 0.083 8.9 -2.3 0.0 293 323 482 512 405 546 0.58 # 3233 # 5320 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_55 - 388 GTP_EFTU PF00009.22 188 0.0012 11.4 0.0 1 1 2e-05 0.0021 10.5 0.0 8 34 157 183 155 195 0.87 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 RNA_helicase PF00910.17 107 0.00062 13.0 0.0 1 1 1.8e-05 0.00098 12.3 0.0 1 26 3 28 3 47 0.84 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_55 - 388 RNA_helicase PF00910.17 107 0.0012 12.1 0.0 1 1 4.9e-05 0.0027 10.9 0.0 3 26 157 180 156 197 0.81 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 UPF0079 PF02367.12 123 0.00022 13.9 0.0 1 1 3.3e-06 0.00036 13.2 0.0 17 36 2 21 1 30 0.88 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 AAA_24 PF13479.1 213 7.7e-05 15.3 0.0 1 1 1.4e-06 0.00015 14.4 0.0 6 33 3 34 1 73 0.90 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 NACHT PF05729.7 166 1.7e-05 17.6 0.0 1 2 1.5e-06 8.3e-05 15.3 0.0 2 22 2 22 1 37 0.89 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 NACHT PF05729.7 166 1.7e-05 17.6 0.0 2 2 0.091 4.9 -0.2 0.0 77 91 151 177 95 179 0.61 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_55 - 388 NACHT PF05729.7 166 0.00036 13.2 0.0 1 1 1.3e-05 0.00071 12.3 0.0 4 29 156 181 154 188 0.83 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_55 - 388 AAA_25 PF13481.1 194 6.2e-06 18.7 0.0 1 1 1.3e-07 1.4e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 32248 # 33411 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_11 - 181 AAA_28 PF13521.1 163 0.00015 14.8 0.0 1 1 2.9e-06 0.00032 13.7 0.0 2 30 3 34 2 165 0.89 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 APS_kinase PF01583.15 157 1.5e-05 17.7 0.0 1 2 7.3e-06 0.00079 12.1 0.0 4 24 2 22 1 35 0.87 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_11 - 181 APS_kinase PF01583.15 157 1.5e-05 17.7 0.0 2 2 0.0032 0.35 3.5 0.1 34 73 107 148 95 160 0.86 # 11823 # 12365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/df65a866-3acb-42e5-b2a2-5073b0dadea0 # Target file: checkm_output/bins/pm1767/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1767/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/df65a866-3acb-42e5-b2a2-5073b0dadea0 checkm_output/bins/pm1767/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:19 2020 # [ok]