# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 332 cobW PF02492.14 178 2e-06 20.1 0.0 1 1 4.1e-08 3.8e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 Parvo_NS1 PF01057.12 272 0.00079 11.1 0.0 1 1 1.4e-05 0.0013 10.4 0.0 104 138 148 182 140 188 0.90 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 1077 Torsin PF06309.6 127 1.9e-05 17.3 0.0 1 1 6.1e-07 5.6e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 260 IstB_IS21 PF01695.12 178 7.9e-66 213.6 0.0 1 1 4.4e-67 2e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 IstB_IS21 PF01695.12 178 2.6e-05 16.5 0.0 1 1 8.9e-07 4.1e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 1077 UvrD_C_2 PF13538.1 104 2.4e-16 52.6 0.1 1 1 1e-17 9.6e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_6 - 332 AAA_2 PF07724.9 171 5.3e-06 19.2 0.0 1 1 1e-07 9.4e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 DUF87 PF01935.12 229 1e-07 24.8 0.0 1 1 3.4e-09 1.6e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 332 DUF87 PF01935.12 229 2.4e-06 20.3 0.0 1 1 9.7e-08 4.4e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_22 PF13401.1 131 2.5e-07 23.7 0.0 1 1 2.4e-08 5.6e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 AAA_22 PF13401.1 131 1.2e-06 21.6 0.0 1 2 1.7e-05 0.00038 13.4 0.1 4 28 101 125 98 148 0.75 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_35 - 260 AAA_22 PF13401.1 131 1.2e-06 21.6 0.0 2 2 0.0033 0.075 6.0 0.0 77 101 151 178 124 201 0.64 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_13 - 867 AAA_22 PF13401.1 131 9.9e-05 15.3 0.0 1 1 0.0001 0.0023 10.9 0.0 5 28 492 515 489 549 0.85 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_24 - 1077 AAA_22 PF13401.1 131 0.00059 12.8 0.2 1 1 0.0003 0.0068 9.4 0.2 4 125 494 598 490 603 0.81 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_24 - 478 DNA_methylase PF00145.12 335 2e-79 259.8 0.0 1 1 4.4e-81 4.1e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 18341 # 19774 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.483 1_35 - 260 AAA_17 PF13207.1 121 0.00035 14.2 0.0 1 1 2.6e-05 0.0006 13.4 0.0 2 26 104 131 103 216 0.74 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 AAA_17 PF13207.1 121 0.00037 14.1 0.1 1 1 3.8e-05 0.00087 12.9 0.1 2 40 161 195 160 229 0.75 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 AAA_17 PF13207.1 121 0.00051 13.7 0.1 1 1 9e-05 0.0021 11.7 0.0 4 42 131 191 129 260 0.58 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_13 - 867 AAA_17 PF13207.1 121 0.00086 12.9 4.9 1 1 0.0003 0.0069 10.0 0.0 3 21 495 513 494 565 0.80 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_39 - 370 ADH_zinc_N_2 PF13602.1 127 3.5e-06 20.7 0.0 1 1 9.8e-08 9e-06 19.4 0.0 2 121 231 362 230 363 0.62 # 31763 # 32872 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_6 - 332 MobB PF03205.9 140 8.1e-06 18.4 1.9 1 1 1.5e-07 1.4e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 370 ADH_zinc_N PF00107.21 130 4.7e-23 74.0 0.1 1 1 8.3e-25 7.7e-23 73.3 0.1 1 128 197 330 197 332 0.86 # 31763 # 32872 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_24 - 1077 PhoH PF02562.11 205 3e-09 29.2 4.8 1 2 1.4e-06 4.4e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 PhoH PF02562.11 205 3e-09 29.2 4.8 2 2 4.5e-06 0.00014 13.9 0.1 120 162 562 605 553 635 0.82 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 260 PhoH PF02562.11 205 2.9e-07 22.7 0.1 1 1 1.5e-08 4.6e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 PhoH PF02562.11 205 0.00028 12.9 0.0 1 1 1.7e-05 0.00052 12.1 0.0 14 45 153 184 143 210 0.79 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_7 PF12775.2 272 9.1e-05 14.4 0.0 1 1 2.3e-06 0.00022 13.2 0.0 25 64 150 189 139 209 0.86 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 AFG1_ATPase PF03969.11 362 0.00028 12.5 0.0 1 1 5.8e-06 0.00054 11.6 0.0 64 214 103 251 81 258 0.78 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 T2SE PF00437.15 272 2.9e-52 170.0 0.1 1 1 7.4e-54 3.4e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 T2SE PF00437.15 272 0.0008 11.1 0.1 1 1 3.1e-05 0.0014 10.3 0.1 130 149 128 147 103 160 0.84 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 332 Zeta_toxin PF06414.7 201 1.4e-06 20.3 0.0 1 1 2.7e-08 2.5e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 Arch_ATPase PF01637.13 234 8e-06 18.4 0.0 1 1 1.6e-07 1.5e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_16 PF13191.1 185 6.2e-07 22.3 0.0 1 1 5.1e-08 1.6e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 AAA_16 PF13191.1 185 1.4e-05 18.0 2.4 1 1 3.6e-06 0.00011 15.0 0.1 23 51 100 128 86 149 0.80 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_13 - 867 AAA_16 PF13191.1 185 0.0009 12.0 0.0 1 1 0.00027 0.0083 8.9 0.0 25 47 492 514 481 574 0.85 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_6 - 332 AAA_23 PF13476.1 202 0.00041 13.5 0.0 1 1 1.4e-05 0.00066 12.8 0.0 19 39 158 178 105 184 0.91 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_13 - 867 AAA_23 PF13476.1 202 0.0044 10.1 0.0 1 1 9.5e-05 0.0044 10.1 0.0 22 39 494 511 464 521 0.84 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_6 - 332 AAA_18 PF13238.1 129 4.3e-06 19.9 0.0 1 1 2e-07 9e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 AAA_18 PF13238.1 129 0.00012 15.2 0.0 1 1 5.2e-06 0.00024 14.2 0.0 3 21 131 149 130 238 0.78 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 239 CbiA PF01656.18 195 3.8e-06 19.2 0.6 1 2 0.00081 0.037 6.2 0.1 1 19 3 21 3 25 0.89 # 11677 # 12393 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_20 - 239 CbiA PF01656.18 195 3.8e-06 19.2 0.6 2 2 1.8e-05 0.00084 11.5 0.0 109 165 81 142 29 173 0.76 # 11677 # 12393 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_35 - 260 CbiA PF01656.18 195 0.00089 11.5 0.0 1 1 2.5e-05 0.0012 11.1 0.0 3 42 105 145 104 254 0.75 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 KaiC PF06745.8 227 0.00016 13.6 0.0 1 1 3e-06 0.00028 12.8 0.0 16 53 155 190 148 240 0.77 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 AAA_14 PF13173.1 128 3.3e-07 23.1 0.0 1 1 5.1e-08 1.6e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_23 - 510 AAA_14 PF13173.1 128 1.1e-05 18.1 0.0 1 2 6.5e-06 0.0002 14.1 0.0 6 89 130 213 125 234 0.76 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_23 - 510 AAA_14 PF13173.1 128 1.1e-05 18.1 0.0 2 2 0.065 2 1.1 0.0 53 81 340 372 300 391 0.57 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 332 AAA_14 PF13173.1 128 0.00025 13.7 0.1 1 2 0.0067 0.2 4.3 0.0 64 96 135 165 98 166 0.69 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_14 PF13173.1 128 0.00025 13.7 0.1 2 2 9.5e-05 0.0029 10.3 0.0 2 35 158 191 157 213 0.80 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 GvpD PF07088.6 484 2.3e-06 18.9 0.0 1 1 3.9e-08 3.6e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_29 PF13555.1 62 0.00092 11.6 0.0 1 1 2.3e-05 0.0021 10.4 0.0 19 43 157 178 145 188 0.75 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 AAA PF00004.24 132 2e-08 27.3 0.0 1 1 8.2e-10 3.8e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_24 - 1077 AAA PF00004.24 132 3e-06 20.3 0.9 1 1 2.6e-07 1.2e-05 18.3 0.1 4 111 500 600 497 612 0.73 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 260 Bac_DnaA PF00308.13 219 4.7e-09 28.9 0.0 1 1 7.8e-11 7.1e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 Sigma54_activat PF00158.21 168 7.9e-06 18.2 0.0 1 1 3.1e-07 1.4e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 1077 Sigma54_activat PF00158.21 168 0.00015 14.0 0.4 1 1 9.4e-06 0.00043 12.6 0.4 8 130 480 600 473 606 0.79 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_6 - 332 MMR_HSR1 PF01926.18 116 0.0004 13.2 0.0 1 1 7.1e-06 0.00065 12.5 0.0 2 41 161 205 160 310 0.84 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 DUF258 PF03193.11 161 0.0001 14.3 0.0 1 1 4.1e-06 0.00019 13.5 0.0 29 61 151 184 129 224 0.81 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 DUF258 PF03193.11 161 0.00019 13.4 0.0 1 1 7.3e-06 0.00034 12.6 0.0 26 59 92 125 80 153 0.82 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_23 - 510 TraG-D_C PF12696.2 128 1.2e-21 69.7 0.0 1 1 2.2e-23 2e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_35 - 260 NTPase_1 PF03266.10 168 0.00021 13.8 0.1 1 2 0.0015 0.14 4.6 0.1 2 30 104 132 103 143 0.82 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_35 - 260 NTPase_1 PF03266.10 168 0.00021 13.8 0.1 2 2 0.0003 0.028 6.9 0.0 87 108 155 176 141 202 0.77 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 AAA_33 PF13671.1 143 0.00034 13.3 0.0 1 1 5.9e-06 0.00054 12.6 0.0 2 26 161 188 160 256 0.81 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 370 2-Hacid_dh_C PF02826.14 178 0.00066 11.6 0.1 1 1 1.3e-05 0.0012 10.8 0.1 36 73 187 225 176 237 0.82 # 31763 # 32872 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_24 - 1077 AAA_30 PF13604.1 196 1.9e-53 173.7 7.6 1 1 1.5e-54 7.1e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_6 - 332 AAA_30 PF13604.1 196 0.00014 14.3 0.1 1 2 4.7e-05 0.0022 10.4 0.1 11 51 151 190 145 197 0.80 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_30 PF13604.1 196 0.00014 14.3 0.1 2 2 0.024 1.1 1.6 0.0 121 178 204 258 191 272 0.77 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 FtsK_SpoIIIE PF01580.13 205 7.9e-07 21.5 0.0 1 1 5.1e-08 1.6e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_13 - 867 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.8 0.0 1 1 8.1e-07 2.5e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_23 - 510 FtsK_SpoIIIE PF01580.13 205 0.0006 12.1 0.0 1 1 3.4e-05 0.001 11.3 0.0 39 59 124 147 95 153 0.78 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 3_1 - 108 AAA_35 PF14516.1 331 9.1e-05 13.9 0.8 1 2 1.8e-06 0.00016 13.1 0.6 184 226 47 91 40 97 0.75 # 1 # 324 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 3_1 - 108 AAA_35 PF14516.1 331 9.1e-05 13.9 0.8 2 2 0.0017 0.16 3.3 0.1 180 214 72 106 69 107 0.91 # 1 # 324 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_39 - 370 Met_10 PF02475.11 200 0.00062 12.2 0.0 1 1 1.2e-05 0.0011 11.4 0.0 98 143 183 229 178 278 0.85 # 31763 # 32872 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_6 - 332 ABC_tran PF00005.22 137 1.4e-06 21.4 0.0 1 1 7.4e-08 2.3e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 ABC_tran PF00005.22 137 0.00048 13.2 0.2 1 1 6.1e-05 0.0019 11.3 0.1 8 31 98 121 95 132 0.86 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_13 - 867 ABC_tran PF00005.22 137 0.00062 12.9 0.0 1 1 6.8e-05 0.0021 11.2 0.0 14 38 494 518 481 550 0.83 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_6 - 332 ATP-synt_ab PF00006.20 215 0.0005 12.4 0.0 1 1 8.8e-06 0.00081 11.7 0.0 16 62 159 205 151 247 0.86 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 AAA_19 PF13245.1 76 0.00059 12.4 0.1 1 1 4.2e-05 0.0013 11.3 0.1 5 48 153 191 149 224 0.78 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 AAA_19 PF13245.1 76 0.00062 12.3 0.2 1 1 7.9e-05 0.0024 10.5 0.0 11 35 103 126 95 157 0.81 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_24 - 1077 AAA_19 PF13245.1 76 0.0021 10.6 3.7 1 2 0.00084 0.026 7.2 0.2 2 75 485 551 484 552 0.75 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 AAA_19 PF13245.1 76 0.0021 10.6 3.7 2 2 0.041 1.3 1.8 0.0 17 32 706 721 705 731 0.82 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 Helicase_RecD PF05127.9 177 1.9e-05 17.2 4.9 1 2 0.00059 0.054 5.9 0.1 122 146 498 522 481 539 0.76 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 Helicase_RecD PF05127.9 177 1.9e-05 17.2 4.9 2 2 7.1e-06 0.00065 12.1 0.1 73 114 546 585 521 653 0.70 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_13 - 867 AAA_10 PF12846.2 304 2.2e-35 115.3 0.1 1 1 3.2e-36 7.3e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_23 - 510 AAA_10 PF12846.2 304 5e-07 22.2 0.1 1 2 2.8e-05 0.00063 12.0 0.1 3 41 128 166 126 177 0.92 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_23 - 510 AAA_10 PF12846.2 304 5e-07 22.2 0.1 2 2 0.00045 0.01 8.0 0.0 214 286 339 414 307 431 0.75 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_35 - 260 AAA_10 PF12846.2 304 3.4e-05 16.1 0.2 1 2 0.058 1.3 1.1 0.0 106 155 28 69 4 89 0.61 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_35 - 260 AAA_10 PF12846.2 304 3.4e-05 16.1 0.2 2 2 1.8e-05 0.0004 12.6 0.1 3 35 103 135 101 172 0.84 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 AAA_10 PF12846.2 304 0.00024 13.3 0.0 1 1 1.6e-05 0.00038 12.7 0.0 3 29 160 185 158 233 0.81 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 ResIII PF04851.10 184 5.7e-06 19.0 0.0 1 1 9.8e-08 9e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 1077 Viral_helicase1 PF01443.13 234 6.3e-15 48.1 5.4 1 2 2.3e-08 2.1e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 Viral_helicase1 PF01443.13 234 6.3e-15 48.1 5.4 2 2 3e-11 2.8e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_6 - 332 DUF2075 PF09848.4 352 8.4e-05 14.4 0.0 1 1 1.3e-06 0.00012 13.9 0.0 1 32 158 187 158 216 0.76 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 DEAD PF00270.24 169 2.7e-06 19.7 0.0 1 1 5.7e-08 5.2e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 TrwB_AAD_bind PF10412.4 386 9.7e-119 389.1 0.0 1 1 3.7e-120 1.1e-118 388.9 0.0 1 385 112 490 112 491 0.95 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_13 - 867 TrwB_AAD_bind PF10412.4 386 8.5e-07 20.6 1.6 1 2 1.5e-06 4.5e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_13 - 867 TrwB_AAD_bind PF10412.4 386 8.5e-07 20.6 1.6 2 2 0.0042 0.13 3.5 0.0 102 168 741 806 720 812 0.79 # 11336 # 13936 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_6 - 332 TrwB_AAD_bind PF10412.4 386 1.3e-05 16.8 0.1 1 1 6.4e-07 1.9e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 Sigma54_activ_2 PF14532.1 138 2.2e-06 20.6 0.0 1 1 1e-07 4.6e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 Sigma54_activ_2 PF14532.1 138 0.00036 13.4 0.0 1 1 1.3e-05 0.00058 12.7 0.0 9 64 87 144 84 229 0.70 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_23 - 510 T4SS-DNA_transf PF02534.9 469 5e-12 37.8 0.0 1 1 7.9e-14 7.3e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 13741 # 15270 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 332 Pox_A32 PF04665.7 241 9.2e-05 14.6 0.0 1 1 1.7e-06 0.00016 13.8 0.0 12 46 157 191 150 210 0.85 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 1077 PIF1 PF05970.9 364 1.8e-06 19.8 0.1 1 2 1.3e-07 1.2e-05 17.1 0.0 2 65 478 537 477 588 0.85 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 PIF1 PF05970.9 364 1.8e-06 19.8 0.1 2 2 0.089 8.2 -2.1 0.0 334 363 795 823 783 824 0.84 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_6 - 332 GTP_EFTU PF00009.22 188 0.0002 13.6 0.2 1 1 3.5e-06 0.00032 12.9 0.2 2 32 157 187 156 205 0.83 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 RNA_helicase PF00910.17 107 1.8e-05 17.7 0.1 1 2 3.5e-06 0.00032 13.7 0.0 1 25 161 185 161 242 0.75 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 RNA_helicase PF00910.17 107 1.8e-05 17.7 0.1 2 2 0.027 2.5 1.2 0.1 69 100 290 322 281 328 0.78 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 UPF0079 PF02367.12 123 5.6e-06 18.8 0.0 1 1 1.2e-07 1.1e-05 17.8 0.0 9 45 152 188 145 193 0.85 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_39 - 370 TrkA_N PF02254.13 116 2.2e-05 17.3 0.0 1 1 3.9e-07 3.6e-05 16.6 0.0 1 46 190 237 190 279 0.85 # 31763 # 32872 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_39 - 370 AlaDh_PNT_C PF01262.16 168 0.00045 12.6 0.6 1 1 2.1e-05 0.0019 10.5 0.1 15 69 181 237 171 249 0.84 # 31763 # 32872 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_35 - 260 AAA_24 PF13479.1 213 0.0012 11.2 0.1 1 1 3e-05 0.0028 10.0 0.1 5 23 103 121 99 127 0.85 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 332 Myosin_head PF00063.16 689 0.00014 12.7 0.0 1 1 2.2e-06 0.0002 12.2 0.0 84 110 157 183 147 209 0.90 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_6 - 332 NACHT PF05729.7 166 8.2e-05 15.1 0.0 1 1 3.8e-06 0.00018 14.0 0.0 1 27 159 185 159 188 0.90 # 5305 # 6300 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_35 - 260 NACHT PF05729.7 166 0.00012 14.6 0.0 1 1 4.1e-06 0.00019 13.9 0.0 3 49 104 151 102 200 0.81 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_35 - 260 AAA_25 PF13481.1 194 6.6e-07 21.7 0.1 1 1 2.2e-08 2e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_35 - 260 AAA_28 PF13521.1 163 0.00023 13.9 0.0 1 1 5e-06 0.00046 13.0 0.0 1 49 103 156 103 171 0.73 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_24 - 1077 Herpes_Helicase PF02689.9 819 2e-05 15.3 0.0 1 2 0.0014 0.13 2.7 0.0 173 208 539 574 515 584 0.81 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_24 - 1077 Herpes_Helicase PF02689.9 819 2e-05 15.3 0.0 2 2 9.2e-06 0.00085 9.9 0.0 739 782 850 894 831 914 0.80 # 15270 # 18500 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 260 AAA_5 PF07728.9 139 1.7e-05 17.4 0.0 1 1 4.6e-07 4.2e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 29819 # 30598 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/100a2d37-b76b-4057-9922-ef30d56f6c8f # Target file: checkm_output/bins/pm1766/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1766/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/100a2d37-b76b-4057-9922-ef30d56f6c8f checkm_output/bins/pm1766/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:19 2020 # [ok]