# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_43 - 260 IstB_IS21 PF01695.12 178 4.9e-66 213.6 0.0 1 1 2.2e-67 1.3e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_49 - 221 MipZ PF09140.6 261 6.4e-12 37.1 0.5 1 3 1.2e-06 6.7e-05 14.1 0.0 2 41 4 43 3 57 0.86 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 MipZ PF09140.6 261 6.4e-12 37.1 0.5 2 3 1.2e-08 6.9e-07 20.6 0.0 87 131 68 112 59 136 0.86 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 MipZ PF09140.6 261 6.4e-12 37.1 0.5 3 3 0.084 4.8 -1.8 0.0 30 48 153 171 132 201 0.71 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 AAA_22 PF13401.1 131 7.2e-07 21.6 0.0 1 2 4.1e-06 0.00024 13.4 0.1 4 28 101 125 98 148 0.75 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_22 PF13401.1 131 7.2e-07 21.6 0.0 2 2 0.00082 0.047 6.0 0.0 77 101 151 178 124 201 0.64 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_49 - 221 SRP54 PF00448.17 196 0.00018 13.1 0.0 1 1 1.1e-05 0.0006 11.4 0.0 10 94 12 90 3 104 0.70 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 AAA_17 PF13207.1 121 0.00022 14.2 0.0 1 1 6.5e-06 0.00037 13.4 0.0 2 26 104 131 103 216 0.74 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_49 - 221 MobB PF03205.9 140 6.9e-06 17.9 0.3 1 2 2e-05 0.0012 10.7 0.1 2 37 4 40 3 47 0.85 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 MobB PF03205.9 140 6.9e-06 17.9 0.3 2 2 0.0011 0.062 5.1 0.0 44 76 85 120 73 133 0.81 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 ArsA_ATPase PF02374.10 305 2.4e-11 35.2 0.3 1 2 7.4e-12 4.2e-10 31.2 0.2 4 39 6 41 3 51 0.91 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 ArsA_ATPase PF02374.10 305 2.4e-11 35.2 0.3 2 2 0.0055 0.32 2.0 0.0 103 165 54 116 42 141 0.73 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 PhoH PF02562.11 205 1.8e-07 22.7 0.1 1 1 5e-09 2.8e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AFG1_ATPase PF03969.11 362 0.00017 12.5 0.0 1 1 5.8e-06 0.00033 11.6 0.0 64 214 103 251 81 258 0.78 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 348 T2SE PF00437.15 272 5.3e-47 152.0 0.0 1 1 1.1e-48 6.4e-47 151.8 0.0 12 246 29 289 18 320 0.88 # 15929 # 16972 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_21 - 348 Zeta_toxin PF06414.7 201 0.00021 12.5 0.0 1 1 6.5e-06 0.00037 11.7 0.0 18 60 170 213 158 239 0.76 # 15929 # 16972 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_49 - 221 VirC1 PF07015.6 231 5.1e-08 24.3 0.0 1 1 1.7e-09 9.9e-08 23.4 0.0 3 54 4 55 2 66 0.91 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 Fer4_NifH PF00142.13 273 2.1e-07 22.5 0.2 1 1 8.8e-09 5e-07 21.2 0.0 6 41 9 44 5 48 0.90 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 AAA_16 PF13191.1 185 8.4e-06 18.0 2.4 1 3 1.2e-06 6.8e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_16 PF13191.1 185 8.4e-06 18.0 2.4 2 3 0.035 2 0.4 0.0 124 162 143 175 125 192 0.74 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_16 PF13191.1 185 8.4e-06 18.0 2.4 3 3 0.072 4.1 -0.6 0.0 38 62 217 242 207 252 0.75 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_49 - 221 AAA_18 PF13238.1 129 0.00043 12.7 0.1 1 1 1.5e-05 0.00084 11.8 0.0 8 79 13 86 11 108 0.79 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 CbiA PF01656.18 195 2.7e-17 54.9 0.2 1 1 1.8e-18 5.3e-17 53.9 0.2 2 174 6 161 5 182 0.74 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 CbiA PF01656.18 195 0.00055 11.5 0.0 1 1 2.5e-05 0.00072 11.1 0.0 3 42 105 145 104 254 0.75 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_14 PF13173.1 128 2e-07 23.1 0.0 1 2 1.7e-08 9.8e-07 20.9 0.0 3 97 102 203 100 219 0.64 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_14 PF13173.1 128 2e-07 23.1 0.0 2 2 0.048 2.7 0.0 0.0 14 46 215 247 212 257 0.80 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_29 - 132 tRNA-synt_1 PF00133.17 601 0.00022 11.4 0.1 1 1 4.1e-06 0.00023 11.3 0.1 462 492 80 110 28 122 0.79 # 21462 # 21857 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.346 1_43 - 260 AAA PF00004.24 132 1.2e-08 27.3 0.0 1 1 4.1e-10 2.3e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 Bac_DnaA PF00308.13 219 2.9e-09 28.9 0.0 1 1 7.8e-11 4.4e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 DUF258 PF03193.11 161 0.00012 13.4 0.0 1 1 3.7e-06 0.00021 12.6 0.0 26 59 92 125 80 153 0.82 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_22 - 612 TraG-D_C PF12696.2 128 2e-28 91.0 0.0 1 1 6.2e-30 3.5e-28 90.2 0.0 2 126 416 533 415 535 0.87 # 16975 # 18810 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_20 - 404 DLIC PF05783.6 472 0.023 5.4 7.5 1 1 0.00064 0.036 4.7 7.5 377 458 117 204 76 210 0.63 # 14706 # 15917 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.500 1_49 - 221 AAA_31 PF13614.1 157 7.8e-09 27.8 0.1 1 2 5.4e-09 3.1e-07 22.6 0.0 1 41 3 43 3 60 0.90 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 221 AAA_31 PF13614.1 157 7.8e-09 27.8 0.1 2 2 0.0053 0.3 3.1 0.0 111 151 73 112 62 115 0.87 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 NTPase_1 PF03266.10 168 0.00013 13.8 0.1 1 2 0.0015 0.087 4.6 0.1 2 30 104 132 103 143 0.82 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 NTPase_1 PF03266.10 168 0.00013 13.8 0.1 2 2 0.0003 0.017 6.9 0.0 87 108 155 176 141 202 0.77 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 ABC_tran PF00005.22 137 0.0003 13.2 0.2 1 1 2e-05 0.0012 11.3 0.1 8 31 98 121 95 132 0.86 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_19 PF13245.1 76 0.00038 12.3 0.2 1 1 2.6e-05 0.0015 10.5 0.0 11 35 103 126 95 157 0.81 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_14 - 920 AAA_10 PF12846.2 304 1.1e-33 109.0 0.0 1 1 1.1e-34 3.2e-33 107.5 0.0 3 292 539 823 538 832 0.89 # 7976 # 10735 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_43 - 260 AAA_10 PF12846.2 304 2.1e-05 16.1 0.2 1 2 0.029 0.82 1.1 0.0 106 155 28 69 4 89 0.61 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_10 PF12846.2 304 2.1e-05 16.1 0.2 2 2 8.8e-06 0.00025 12.6 0.1 3 35 103 135 101 172 0.84 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 348 DEAD PF00270.24 169 0.00017 13.2 0.0 1 1 5.4e-06 0.00031 12.4 0.0 7 39 159 191 156 246 0.79 # 15929 # 16972 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_22 - 612 TrwB_AAD_bind PF10412.4 386 3.6e-22 70.5 0.0 1 1 1.1e-23 6.4e-22 69.7 0.0 165 380 331 548 294 552 0.86 # 16975 # 18810 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_43 - 260 Sigma54_activ_2 PF14532.1 138 0.00023 13.4 0.0 1 1 6.3e-06 0.00036 12.7 0.0 9 64 87 144 84 229 0.70 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_22 - 612 T4SS-DNA_transf PF02534.9 469 8e-150 491.5 0.0 1 1 1.7e-151 9.8e-150 491.2 0.0 2 460 102 569 101 581 0.98 # 16975 # 18810 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 1_49 - 221 GTP_EFTU PF00009.22 188 1.1e-07 23.5 0.0 1 1 2.3e-09 1.3e-07 23.3 0.0 15 115 15 123 4 210 0.70 # 42808 # 43470 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 260 AAA_24 PF13479.1 213 0.00075 11.2 0.1 1 1 3e-05 0.0017 10.0 0.1 5 23 103 121 99 127 0.85 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_10 - 164 TIGR00922 TIGR00922 172 3.4e-08 25.3 0.0 1 2 0.08 4.5 -1.1 0.0 1 20 3 22 3 27 0.81 # 6321 # 6812 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.415 1_10 - 164 TIGR00922 TIGR00922 172 3.4e-08 25.3 0.0 2 2 1.6e-09 9.1e-08 23.9 0.0 56 110 52 106 30 145 0.90 # 6321 # 6812 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.415 1_43 - 260 NACHT PF05729.7 166 7.3e-05 14.6 0.0 1 1 2.1e-06 0.00012 13.9 0.0 3 49 104 151 102 200 0.81 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_25 PF13481.1 194 4.1e-07 21.7 0.1 1 1 4.4e-08 1.3e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 348 AAA_25 PF13481.1 194 0.0002 12.9 0.0 1 1 1.1e-05 0.00031 12.3 0.0 20 52 154 186 138 218 0.87 # 15929 # 16972 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_43 - 260 AAA_28 PF13521.1 163 0.00014 13.9 0.0 1 1 5e-06 0.00028 13.0 0.0 1 49 103 156 103 171 0.73 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_43 - 260 AAA_5 PF07728.9 139 1e-05 17.4 0.0 1 1 4.6e-07 2.6e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 37593 # 38372 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/97213020-f0c9-4e7c-be9e-53c74754f666 # Target file: checkm_output/bins/pm1764/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1764/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/97213020-f0c9-4e7c-be9e-53c74754f666 checkm_output/bins/pm1764/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:17 2020 # [ok]