# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 226 UPF0020 PF01170.13 180 2.1e-06 20.5 0.0 1 2 0.00026 0.01 8.5 0.0 102 122 16 36 3 88 0.72 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 UPF0020 PF01170.13 180 2.1e-06 20.5 0.0 2 2 8.8e-05 0.0034 10.1 0.0 27 54 162 188 158 216 0.72 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 3_11 - 234 UPF0020 PF01170.13 180 4.2e-06 19.5 0.0 1 2 0.00016 0.0062 9.2 0.0 103 120 17 34 5 75 0.83 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_11 - 234 UPF0020 PF01170.13 180 4.2e-06 19.5 0.0 2 2 0.00028 0.011 8.4 0.0 28 51 170 193 165 227 0.75 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 6_1 - 188 UPF0020 PF01170.13 180 4.2e-05 16.3 0.0 1 1 5.4e-06 0.00021 14.0 0.0 19 43 41 65 39 138 0.91 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 6_1 - 188 RrnaAD PF00398.15 262 1.2e-05 17.6 0.0 1 1 1.3e-07 1.5e-05 17.2 0.0 10 113 30 128 26 140 0.87 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_3 - 402 MipZ PF09140.6 261 2.2e-06 20.0 0.0 1 2 0.0053 0.31 3.1 0.0 3 50 111 163 109 193 0.73 # 1928 # 3133 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 3_3 - 402 MipZ PF09140.6 261 2.2e-06 20.0 0.0 2 2 1.7e-06 0.0001 14.6 0.0 87 136 233 282 220 296 0.87 # 1928 # 3133 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_9 - 402 MipZ PF09140.6 261 6.2e-06 18.5 0.5 1 2 6.2e-05 0.0036 9.5 0.1 1 50 110 164 110 191 0.74 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 402 MipZ PF09140.6 261 6.2e-06 18.5 0.5 2 2 0.00042 0.025 6.7 0.0 90 135 237 282 227 287 0.89 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 4_5 - 301 3HCDH_N PF02737.13 180 2.9e-07 23.4 0.7 1 1 2.1e-08 1.2e-06 21.3 0.7 1 40 6 45 6 116 0.91 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 565 3HCDH_N PF02737.13 180 0.0037 10.0 6.4 1 2 0.0095 0.55 2.9 2.4 1 30 99 128 99 134 0.93 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 3HCDH_N PF02737.13 180 0.0037 10.0 6.4 2 2 0.00018 0.01 8.6 0.1 2 39 272 309 271 348 0.73 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 GIDA PF01134.17 392 3e-08 26.0 6.6 1 3 6.9e-10 4e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 GIDA PF01134.17 392 3e-08 26.0 6.6 2 3 0.076 4.4 -0.9 0.0 3 31 273 301 271 315 0.84 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 GIDA PF01134.17 392 3e-08 26.0 6.6 3 3 0.037 2.1 0.1 0.1 349 385 393 429 387 433 0.77 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_5 - 301 GIDA PF01134.17 392 0.0058 8.6 3.4 1 1 0.00014 0.0081 8.1 3.4 2 72 7 78 6 90 0.89 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 5_1 - 181 SSB PF00436.20 104 5.2e-42 135.1 0.4 1 1 5.5e-44 6.4e-42 134.8 0.4 1 99 6 105 6 113 0.97 # 166 # 708 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.619 6_1 - 188 Methyltransf_18 PF12847.2 112 8.3e-08 26.0 0.0 1 1 1.2e-09 1.4e-07 25.3 0.0 2 107 51 144 50 146 0.90 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_13 - 341 UvrD_C_2 PF13538.1 104 1.3e-06 21.7 0.0 1 1 4.7e-08 2.7e-06 20.6 0.0 33 104 243 330 222 330 0.75 # 8664 # 9686 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 4_17 - 327 UvrD_C_2 PF13538.1 104 0.00037 13.8 0.0 1 1 4.4e-05 0.0026 11.1 0.0 70 103 137 171 83 171 0.86 # 13709 # 14689 # -1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 2_6 - 565 Pyr_redox_2 PF07992.9 201 9.2e-44 142.8 0.0 1 1 3.2e-45 3.8e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_13 - 341 AAA_22 PF13401.1 131 8.7e-05 15.8 0.0 1 1 3.6e-06 0.00042 13.6 0.0 8 111 5 155 4 167 0.77 # 8664 # 9686 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_14 - 226 Methyltransf_11 PF08241.7 95 0.00067 13.3 0.0 1 3 0.045 5.2 0.8 0.0 46 65 4 25 2 28 0.77 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 Methyltransf_11 PF08241.7 95 0.00067 13.3 0.0 2 3 0.0023 0.27 5.0 0.0 78 93 53 68 46 70 0.85 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 Methyltransf_11 PF08241.7 95 0.00067 13.3 0.0 3 3 0.0066 0.76 3.5 0.0 5 41 172 207 168 223 0.74 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_6 - 565 DFP PF04127.10 185 0.0009 12.0 2.4 1 2 0.00039 0.046 6.4 0.4 28 51 105 128 99 156 0.83 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DFP PF04127.10 185 0.0009 12.0 2.4 2 2 0.0014 0.16 4.7 0.1 32 53 281 302 276 336 0.77 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_14 - 521 AAA_15 PF13175.1 415 5.3e-19 61.6 0.1 1 2 2.4e-10 2.7e-08 26.3 0.0 2 45 5 47 4 64 0.90 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_14 - 521 AAA_15 PF13175.1 415 5.3e-19 61.6 0.1 2 2 1.7e-12 2e-10 33.3 0.1 315 414 219 317 177 318 0.72 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_6 - 565 NAD_binding_7 PF13241.1 103 3.9e-07 23.4 1.2 1 2 5.4e-05 0.0063 9.9 0.2 9 38 99 128 96 184 0.89 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_7 PF13241.1 103 3.9e-07 23.4 1.2 2 2 1.4e-05 0.0016 11.8 0.1 8 41 270 306 264 380 0.74 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_14 - 226 N6_N4_Mtase PF01555.13 231 3.4e-37 121.2 0.0 1 1 6.2e-37 3.6e-35 114.6 0.0 1 228 21 200 21 203 0.91 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 3_11 - 234 N6_N4_Mtase PF01555.13 231 6.4e-33 107.2 0.0 1 2 6.5e-13 3.8e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_11 - 234 N6_N4_Mtase PF01555.13 231 6.4e-33 107.2 0.0 2 2 4e-23 2.3e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_14 - 521 AAA_21 PF13304.1 303 1.1e-14 48.1 0.0 1 2 7e-07 8.1e-05 15.8 0.0 2 24 27 49 27 78 0.83 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_14 - 521 AAA_21 PF13304.1 303 1.1e-14 48.1 0.0 2 2 3.3e-11 3.8e-09 30.0 0.1 258 301 274 317 222 319 0.86 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_20 - 87 TIGR03723 TIGR03723 314 0.0012 10.7 0.0 1 1 1.2e-05 0.0013 10.6 0.0 18 70 15 68 7 80 0.80 # 15292 # 15552 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 402 ArsA_ATPase PF02374.10 305 0.00037 12.7 0.1 1 1 8.3e-06 0.00096 11.3 0.0 4 136 113 255 110 257 0.68 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 402 Methyltransf_24 PF13578.1 106 0.00037 14.5 0.0 1 1 1.9e-05 0.0022 12.0 0.0 4 79 120 255 117 271 0.64 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 2_6 - 565 NAD_binding_8 PF13450.1 68 4.1e-05 16.7 1.2 1 2 3.5e-07 4.1e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_8 PF13450.1 68 4.1e-05 16.7 1.2 2 2 0.041 4.7 0.5 0.2 1 25 274 298 274 303 0.81 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_5 - 301 F420_oxidored PF03807.12 96 2.4e-06 21.1 0.6 1 1 1.3e-07 7.5e-06 19.5 0.2 2 78 7 79 6 98 0.82 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 565 F420_oxidored PF03807.12 96 0.0082 9.7 4.1 1 2 0.0047 0.27 4.9 1.2 2 31 100 126 99 131 0.87 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 F420_oxidored PF03807.12 96 0.0082 9.7 4.1 2 2 0.015 0.87 3.3 0.1 1 34 271 300 271 323 0.87 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_14 - 521 SMC_N PF02463.14 220 1.1e-11 37.4 0.0 1 2 1.4e-11 1.6e-09 30.4 0.0 2 70 4 68 3 79 0.85 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_14 - 521 SMC_N PF02463.14 220 1.1e-11 37.4 0.0 2 2 0.00084 0.098 4.9 0.0 160 204 277 320 203 329 0.85 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 402 Fer4_NifH PF00142.13 273 3.8e-06 19.3 0.0 1 1 6.9e-08 8e-06 18.3 0.0 7 72 117 187 112 195 0.80 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 2_14 - 521 AAA_23 PF13476.1 202 2.7e-11 37.3 0.0 1 1 9e-13 1e-10 35.3 0.0 1 53 6 58 6 144 0.88 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 402 CbiA PF01656.18 195 2.2e-23 75.7 0.1 1 2 0.095 5.5 -0.6 0.1 137 173 57 90 53 107 0.67 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 402 CbiA PF01656.18 195 2.2e-23 75.7 0.1 2 2 1.9e-24 1.1e-22 73.5 0.0 1 148 112 309 112 351 0.70 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 402 CbiA PF01656.18 195 1.5e-18 60.0 0.0 1 1 5.6e-20 3.3e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 1928 # 3133 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_6 - 565 HI0933_like PF03486.9 409 2.6e-08 25.8 3.7 1 2 1.2e-06 0.00014 13.5 2.5 2 33 99 130 98 138 0.91 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 HI0933_like PF03486.9 409 2.6e-08 25.8 3.7 2 2 7.2e-06 0.00084 10.9 0.0 82 164 284 366 276 385 0.83 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_14 - 521 AAA_29 PF13555.1 62 1.8e-07 23.8 0.0 1 1 2.9e-09 3.4e-07 22.9 0.0 2 49 5 50 4 57 0.81 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_6 - 565 FAD_binding_2 PF00890.19 417 5e-06 18.6 4.7 1 3 4.3e-08 5e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 FAD_binding_2 PF00890.19 417 5e-06 18.6 4.7 2 3 0.034 4 -0.8 0.1 143 204 311 369 297 388 0.72 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 FAD_binding_2 PF00890.19 417 5e-06 18.6 4.7 3 3 0.074 8.6 -1.9 0.0 376 402 388 408 377 424 0.82 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox_3 PF13738.1 203 1.5e-17 57.4 0.1 1 2 4.4e-14 5.2e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox_3 PF13738.1 203 1.5e-17 57.4 0.1 2 2 9e-07 0.0001 15.5 0.0 93 147 320 375 309 430 0.76 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_5 - 301 NAD_binding_11 PF14833.1 122 5.5e-38 122.9 0.3 1 2 0.035 4.1 0.6 1.5 8 53 96 141 92 159 0.86 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 4_5 - 301 NAD_binding_11 PF14833.1 122 5.5e-38 122.9 0.3 2 2 4.7e-40 5.5e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 6_1 - 188 N6_Mtase PF02384.11 311 0.00054 12.2 0.0 1 2 3.8e-05 0.0044 9.2 0.0 28 71 32 75 21 89 0.82 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 6_1 - 188 N6_Mtase PF02384.11 311 0.00054 12.2 0.0 2 2 0.028 3.3 -0.3 0.0 123 137 110 124 102 132 0.81 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_5 - 301 NAD_binding_2 PF03446.10 163 1.5e-40 131.8 3.7 1 1 1.9e-42 2.2e-40 131.3 3.7 2 162 5 166 4 167 0.96 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_9 - 402 AAA_31 PF13614.1 157 4.3e-08 26.3 0.0 1 3 0.08 4.7 0.2 0.0 44 87 23 65 6 77 0.73 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 402 AAA_31 PF13614.1 157 4.3e-08 26.3 0.0 2 3 3.4e-05 0.002 11.2 0.0 2 90 111 204 110 219 0.81 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 402 AAA_31 PF13614.1 157 4.3e-08 26.3 0.0 3 3 5.3e-05 0.0031 10.6 0.0 109 148 237 275 221 280 0.87 # 6587 # 7792 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 402 AAA_31 PF13614.1 157 0.00011 15.3 0.0 1 1 1.1e-05 0.00063 12.8 0.0 108 147 235 273 230 279 0.86 # 1928 # 3133 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_14 - 226 Methyltransf_26 PF13659.1 117 3.6e-13 42.7 0.1 1 2 7.6e-08 2.2e-06 20.8 0.0 53 114 3 71 2 74 0.77 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 Methyltransf_26 PF13659.1 117 3.6e-13 42.7 0.1 2 2 1.6e-07 4.7e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 6_1 - 188 Methyltransf_26 PF13659.1 117 8.9e-13 41.5 0.0 1 1 5e-14 1.5e-12 40.8 0.0 2 111 52 144 51 148 0.91 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_11 - 234 Methyltransf_26 PF13659.1 117 3.1e-11 36.5 0.2 1 2 1.3e-06 3.7e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_11 - 234 Methyltransf_26 PF13659.1 117 3.1e-11 36.5 0.2 2 2 7.9e-07 2.3e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_5 - 301 Methyltransf_26 PF13659.1 117 0.0034 10.6 6.6 1 1 9.7e-05 0.0028 10.8 4.8 13 105 14 155 6 165 0.68 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 4_5 - 301 2-Hacid_dh_C PF02826.14 178 1.2e-06 20.9 0.1 1 1 1.9e-08 2.2e-06 20.0 0.1 36 146 4 118 2 124 0.86 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 6_1 - 188 MTS PF05175.9 170 3.2e-10 32.7 0.0 1 1 3.9e-12 4.5e-10 32.3 0.0 24 142 43 150 38 170 0.82 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_14 - 521 DUF2813 PF11398.3 373 4e-05 15.9 3.2 1 2 5.9e-06 0.00068 11.8 0.0 12 49 13 51 3 56 0.79 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_14 - 521 DUF2813 PF11398.3 373 4e-05 15.9 3.2 2 2 0.0012 0.14 4.3 0.2 280 333 271 325 258 330 0.80 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_14 - 521 ABC_tran PF00005.22 137 0.00034 14.1 0.0 1 1 9.1e-06 0.0011 12.5 0.0 15 113 28 155 18 161 0.71 # 9671 # 11233 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_6 - 565 K_oxygenase PF13434.1 341 6.6e-06 18.3 0.0 1 3 0.0039 0.46 2.4 0.0 187 220 94 125 59 130 0.79 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 K_oxygenase PF13434.1 341 6.6e-06 18.3 0.0 2 3 3.3e-06 0.00039 12.5 0.0 132 231 218 308 202 332 0.82 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 K_oxygenase PF13434.1 341 6.6e-06 18.3 0.0 3 3 0.057 6.6 -1.4 0.0 132 160 346 369 314 377 0.67 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 234 Cons_hypoth95 PF03602.10 183 3.5e-06 19.6 0.0 1 2 0.00025 0.014 7.8 0.0 113 170 19 78 12 86 0.73 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_11 - 234 Cons_hypoth95 PF03602.10 183 3.5e-06 19.6 0.0 2 2 6.3e-05 0.0036 9.8 0.0 20 60 149 188 142 225 0.73 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_14 - 226 Cons_hypoth95 PF03602.10 183 1e-05 18.1 0.0 1 2 0.00043 0.025 7.1 0.0 112 156 18 64 2 82 0.65 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 Cons_hypoth95 PF03602.10 183 1e-05 18.1 0.0 2 2 9.9e-05 0.0057 9.1 0.0 41 62 162 183 145 213 0.80 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 4_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 8.8e-06 18.3 0.2 1 2 2e-06 0.00023 13.7 0.1 2 39 6 43 5 50 0.92 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 4_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 8.8e-06 18.3 0.2 2 2 0.0061 0.71 2.3 0.0 107 139 86 117 82 126 0.77 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 565 FAD_oxidored PF12831.2 428 3.4e-06 19.4 3.6 1 1 2.9e-08 3.4e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DAO PF01266.19 358 4.9e-09 28.6 11.7 1 3 1.4e-08 1.6e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DAO PF01266.19 358 4.9e-09 28.6 11.7 2 3 0.032 3.7 -0.6 0.1 3 31 273 301 271 307 0.75 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DAO PF01266.19 358 4.9e-09 28.6 11.7 3 3 9.4e-07 0.00011 14.3 0.5 152 208 314 372 307 433 0.74 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_1 - 188 Methyltransf_31 PF13847.1 152 0.0009 12.0 0.0 1 1 9.7e-06 0.0011 11.6 0.0 3 118 50 156 48 182 0.83 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_13 - 341 Viral_helicase1 PF01443.13 234 4.4e-11 35.8 0.3 1 2 4.9e-07 5.6e-05 15.8 0.0 2 30 5 38 4 54 0.72 # 8664 # 9686 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_13 - 341 Viral_helicase1 PF01443.13 234 4.4e-11 35.8 0.3 2 2 2.1e-07 2.4e-05 17.0 0.5 63 233 133 330 125 331 0.66 # 8664 # 9686 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_6 - 565 NAD_binding_9 PF13454.1 156 3.3e-05 16.8 2.8 1 3 0.0081 0.94 2.3 0.1 1 41 101 135 101 162 0.81 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_9 PF13454.1 156 3.3e-05 16.8 2.8 2 3 0.034 3.9 0.3 0.0 134 155 218 241 202 242 0.72 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_9 PF13454.1 156 3.3e-05 16.8 2.8 3 3 6.6e-06 0.00077 12.4 0.1 112 155 321 366 311 367 0.85 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox PF00070.22 80 4.2e-20 65.1 6.0 1 2 1.4e-06 0.00017 15.2 1.5 1 31 99 129 99 131 0.96 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox PF00070.22 80 4.2e-20 65.1 6.0 2 2 6.2e-18 7.2e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_1 - 188 TIGR00755 TIGR00755 256 6.3e-07 21.7 0.0 1 1 7.5e-09 8.7e-07 21.2 0.0 8 105 29 123 26 128 0.88 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_14 - 226 MethyltransfD12 PF02086.10 260 0.0003 13.4 0.0 1 2 0.013 1.5 1.2 0.0 176 188 19 31 12 90 0.83 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 MethyltransfD12 PF02086.10 260 0.0003 13.4 0.0 2 2 2.8e-05 0.0032 10.0 0.0 20 46 163 189 148 197 0.79 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 4_5 - 301 TrkA_N PF02254.13 116 3.9e-05 16.8 0.0 1 1 8e-07 9.3e-05 15.6 0.0 1 42 7 48 7 79 0.86 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 2_6 - 565 AlaDh_PNT_C PF01262.16 168 2.8e-05 16.9 3.1 1 2 0.001 0.06 6.0 0.8 15 50 92 127 89 130 0.90 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 AlaDh_PNT_C PF01262.16 168 2.8e-05 16.9 3.1 2 2 4.2e-05 0.0024 10.5 0.1 16 58 265 307 257 339 0.84 # 2698 # 4392 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_5 - 301 AlaDh_PNT_C PF01262.16 168 0.00015 14.5 1.6 1 2 8.4e-06 0.00049 12.8 0.1 21 66 5 50 2 62 0.90 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 4_5 - 301 AlaDh_PNT_C PF01262.16 168 0.00015 14.5 1.6 2 2 0.056 3.2 0.4 0.2 13 42 84 113 72 117 0.84 # 1759 # 2661 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 2_13 - 341 UvrD-helicase PF00580.16 315 2.4e-08 26.7 0.0 1 2 1.2e-05 0.0014 11.0 0.0 16 67 4 47 2 86 0.80 # 8664 # 9686 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_13 - 341 UvrD-helicase PF00580.16 315 2.4e-08 26.7 0.0 2 2 1.9e-06 0.00023 13.6 0.0 242 294 115 170 91 174 0.86 # 8664 # 9686 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 3_11 - 234 Methyltransf_15 PF09445.5 164 0.00087 12.0 0.0 1 2 0.046 2.7 0.6 0.0 53 80 4 30 2 38 0.91 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_11 - 234 Methyltransf_15 PF09445.5 164 0.00087 12.0 0.0 2 2 0.00014 0.0081 8.8 0.0 3 30 173 200 171 213 0.90 # 10409 # 11110 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_14 - 226 Methyltransf_15 PF09445.5 164 0.0013 11.5 0.0 1 2 0.07 4 0.1 0.0 53 79 4 29 2 33 0.90 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_14 - 226 Methyltransf_15 PF09445.5 164 0.0013 11.5 0.0 2 2 0.00014 0.0082 8.8 0.0 3 31 166 194 164 207 0.86 # 11799 # 12476 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/28912e8f-3ab3-41cb-941c-1b61d7f61d65 # Target file: checkm_output/bins/pm1745/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1745/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/28912e8f-3ab3-41cb-941c-1b61d7f61d65 checkm_output/bins/pm1745/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:08 2020 # [ok]