# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 210 MipZ PF09140.6 261 4.3e-12 36.9 1.5 1 2 5.9e-11 1.9e-09 28.2 0.1 2 40 3 41 2 54 0.90 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 MipZ PF09140.6 261 4.3e-12 36.9 1.5 2 2 9.3e-05 0.003 7.9 0.1 98 135 75 112 61 148 0.78 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 YhjQ PF06564.7 244 4.6e-07 20.7 1.1 1 3 9.1e-08 2.9e-06 18.0 0.1 1 41 1 41 1 45 0.94 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 YhjQ PF06564.7 244 4.6e-07 20.7 1.1 2 3 0.037 1.2 -0.3 0.0 112 149 70 107 64 130 0.86 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 YhjQ PF06564.7 244 4.6e-07 20.7 1.1 3 3 0.056 1.8 -0.9 0.0 216 233 185 202 175 205 0.83 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 SRP54 PF00448.17 196 2.8e-05 14.9 0.1 1 1 1.7e-06 5.6e-05 13.9 0.1 10 38 11 39 2 45 0.87 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_17 PF13207.1 121 7.1e-08 24.6 0.0 1 1 3e-09 9.7e-08 24.2 0.0 9 78 12 92 11 167 0.67 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 MobB PF03205.9 140 6.8e-05 13.9 0.0 1 1 4.1e-06 0.00013 13.0 0.0 10 67 12 54 2 129 0.72 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 LpxK PF02606.9 326 3.9e-05 13.9 0.1 1 1 1.7e-06 5.5e-05 13.5 0.1 36 95 2 59 1 103 0.79 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 ArsA_ATPase PF02374.10 305 3.2e-07 20.9 0.1 1 1 1.6e-08 5.1e-07 20.2 0.0 6 45 7 46 1 62 0.85 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 SKI PF01202.17 158 0.00014 13.0 0.1 1 1 7.4e-06 0.00024 12.3 0.1 2 22 12 32 11 38 0.91 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 VirC1 PF07015.6 231 2.5e-07 21.2 0.1 1 1 3.4e-08 1.1e-06 19.2 0.1 1 149 1 141 1 188 0.78 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 Fer4_NifH PF00142.13 273 7.5e-05 13.2 0.0 1 2 6.8e-06 0.00022 11.7 0.0 6 40 8 42 2 58 0.89 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 Fer4_NifH PF00142.13 273 7.5e-05 13.2 0.0 2 2 0.066 2.1 -1.3 0.0 220 245 179 204 112 207 0.65 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_16 PF13191.1 185 5.8e-06 17.7 0.1 1 2 6.7e-06 0.00021 12.6 0.0 34 70 12 49 10 62 0.86 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_16 PF13191.1 185 5.8e-06 17.7 0.1 2 2 0.0046 0.15 3.3 0.0 52 118 96 166 79 205 0.74 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_18 PF13238.1 129 0.00018 13.2 0.0 1 1 9.3e-06 0.0003 12.4 0.0 8 23 12 32 10 132 0.85 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_31 - 310 AAA_13 PF13166.1 712 0.06 2.9 24.4 1 1 0.0033 0.11 2.1 24.4 276 462 83 291 70 300 0.39 # 24259 # 25188 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_28 - 210 CbiA PF01656.18 195 1.3e-31 100.8 0.3 1 1 9.8e-33 3.1e-31 99.5 0.3 1 180 4 164 4 175 0.75 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_31 PF13614.1 157 2.9e-11 34.8 0.0 1 2 7.5e-11 2.4e-09 28.6 0.0 1 41 2 42 2 46 0.93 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_31 PF13614.1 157 2.9e-11 34.8 0.0 2 2 0.0024 0.075 4.2 0.0 117 154 75 111 68 114 0.82 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 KTI12 PF08433.5 270 7.6e-05 13.2 0.0 1 1 3.4e-06 0.00011 12.7 0.0 11 43 12 44 6 84 0.83 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_19 PF13245.1 76 4.4e-05 14.5 0.8 1 1 7.1e-06 0.00023 12.3 0.0 20 51 12 41 4 59 0.78 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_10 PF12846.2 304 4.8e-05 14.1 0.0 1 1 1.9e-06 6e-05 13.8 0.0 11 52 12 55 10 95 0.90 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_24 PF13479.1 213 1.4e-05 16.1 0.1 1 1 7e-07 2.2e-05 15.4 0.1 11 89 10 96 2 101 0.77 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 AAA_25 PF13481.1 194 0.00031 11.4 2.1 1 1 0.00017 0.0054 7.4 2.1 41 80 10 39 2 105 0.56 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 210 APS_kinase PF01583.15 157 5.9e-05 14.1 0.0 1 1 3.6e-06 0.00012 13.1 0.0 10 39 10 39 2 53 0.89 # 21438 # 22067 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/132d07af-411e-4bc7-921f-fe25b4a3f8a4 # Target file: checkm_output/bins/pm1740/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1740/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/132d07af-411e-4bc7-921f-fe25b4a3f8a4 checkm_output/bins/pm1740/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:01 2020 # [ok]