# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 234 UPF0020 PF01170.13 180 6.1e-06 19.5 0.0 1 2 5.3e-05 0.0088 9.2 0.0 103 120 17 34 5 75 0.83 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_10 - 234 UPF0020 PF01170.13 180 6.1e-06 19.5 0.0 2 2 9.4e-05 0.015 8.4 0.0 28 51 170 193 165 227 0.75 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 7_3 - 181 cobW PF02492.14 178 0.0012 11.9 0.0 1 1 1.3e-05 0.0021 11.1 0.0 2 21 2 21 1 29 0.81 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_102 - 526 Seryl_tRNA_N PF02403.17 108 0.0013 12.4 8.8 1 3 0.0038 0.62 3.8 0.1 39 104 227 293 206 297 0.90 # 84924 # 86501 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_102 - 526 Seryl_tRNA_N PF02403.17 108 0.0013 12.4 8.8 2 3 0.0012 0.2 5.4 0.1 27 59 324 356 312 377 0.85 # 84924 # 86501 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_102 - 526 Seryl_tRNA_N PF02403.17 108 0.0013 12.4 8.8 3 3 0.00086 0.14 5.8 1.7 17 107 396 485 390 486 0.75 # 84924 # 86501 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 5_1 - 205 DUF1776 PF08643.5 299 7.8e-05 15.5 0.0 1 1 6.7e-07 0.00011 15.0 0.0 107 196 54 137 48 141 0.85 # 242 # 856 # 1 # ID=5_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_2 - 402 MipZ PF09140.6 261 3e-06 20.1 0.0 1 2 0.0027 0.44 3.1 0.0 3 50 111 163 109 193 0.73 # 1567 # 2772 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_2 - 402 MipZ PF09140.6 261 3e-06 20.1 0.0 2 2 8.2e-07 0.00014 14.6 0.0 86 136 232 282 220 296 0.87 # 1567 # 2772 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_86 - 590 3HCDH_N PF02737.13 180 2.3e-05 17.7 0.0 1 1 2.3e-07 3.9e-05 17.0 0.0 2 31 314 343 313 397 0.69 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_19 - 181 SSB PF00436.20 104 4e-41 132.8 0.2 1 1 3e-43 4.9e-41 132.5 0.2 1 99 6 105 6 113 0.97 # 15595 # 16137 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_73 - 1754 UvrD_C_2 PF13538.1 104 1.5e-07 25.1 0.5 1 1 5e-09 8.3e-07 22.8 0.1 3 102 1340 1443 1333 1445 0.76 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_52 - 880 DUF87 PF01935.12 229 2e-05 18.1 0.0 1 2 0.091 15 -1.1 0.2 114 170 313 364 304 395 0.60 # 35665 # 38304 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_52 - 880 DUF87 PF01935.12 229 2e-05 18.1 0.0 2 2 6.4e-07 0.00011 15.7 0.0 26 222 484 674 479 681 0.79 # 35665 # 38304 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_90 - 610 NB-ARC PF00931.17 287 4.6e-07 22.5 0.6 1 1 1e-08 1.7e-06 20.7 0.6 17 183 100 259 85 268 0.69 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_90 - 610 AAA_22 PF13401.1 131 2e-05 18.4 0.1 1 1 1.1e-06 5.8e-05 16.9 0.1 3 125 101 215 99 218 0.81 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 7_3 - 181 AAA_22 PF13401.1 131 2.6e-05 18.0 0.0 1 1 1.4e-06 7.7e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 1754 AAA_22 PF13401.1 131 0.00042 14.1 0.0 1 2 0.017 0.94 3.2 0.0 89 121 505 536 468 538 0.72 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_73 - 1754 AAA_22 PF13401.1 131 0.00042 14.1 0.0 2 2 0.0012 0.065 7.0 0.0 3 28 986 1011 983 1064 0.79 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 4_6 - 478 DNA_methylase PF00145.12 335 3.7e-79 259.8 0.0 1 1 4.4e-81 7.3e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 1702 # 3135 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_86 - 590 NAD_binding_7 PF13241.1 103 0.00038 14.3 0.0 1 1 2.1e-05 0.0035 11.2 0.0 5 88 309 435 307 437 0.65 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_10 - 234 N6_N4_Mtase PF01555.13 231 9.1e-33 107.2 0.0 1 2 3.3e-13 5.4e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_10 - 234 N6_N4_Mtase PF01555.13 231 9.1e-33 107.2 0.0 2 2 2e-23 3.3e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 7_3 - 181 AAA_17 PF13207.1 121 3.9e-06 21.3 0.0 1 1 4.8e-08 7.9e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_86 - 590 Shikimate_DH PF01488.15 135 0.0005 13.8 0.1 1 1 6.9e-06 0.0011 12.6 0.1 6 43 305 342 301 420 0.83 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 7_3 - 181 Cytidylate_kin2 PF13189.1 179 0.0017 11.9 0.0 1 2 9.1e-05 0.015 8.8 0.0 1 22 2 23 2 44 0.81 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 7_3 - 181 Cytidylate_kin2 PF13189.1 179 0.0017 11.9 0.0 2 2 0.026 4.3 0.8 0.0 110 135 96 122 94 136 0.74 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 7_3 - 181 Zeta_toxin PF06414.7 201 0.00013 14.7 0.0 1 2 2.1e-05 0.0034 10.1 0.0 19 50 3 32 1 39 0.78 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 7_3 - 181 Zeta_toxin PF06414.7 201 0.00013 14.7 0.0 2 2 0.0045 0.74 2.4 0.0 94 123 73 102 57 160 0.77 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_86 - 590 F420_oxidored PF03807.12 96 5.3e-05 17.3 0.0 1 1 9.1e-07 0.00015 15.8 0.0 1 23 313 335 313 372 0.90 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_90 - 610 Arch_ATPase PF01637.13 234 3.5e-05 17.2 1.3 1 2 2.1e-07 3.5e-05 17.2 1.3 19 83 101 175 97 278 0.75 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_90 - 610 Arch_ATPase PF01637.13 234 3.5e-05 17.2 1.3 2 2 0.032 5.2 0.2 0.3 39 75 410 448 387 495 0.60 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_72 - 770 AAA_16 PF13191.1 185 2.4e-06 21.3 0.0 1 1 2.8e-07 2.3e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_90 - 610 AAA_16 PF13191.1 185 0.0021 11.6 0.3 1 2 0.0023 0.19 5.3 0.1 29 81 107 157 101 174 0.66 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_90 - 610 AAA_16 PF13191.1 185 0.0021 11.6 0.3 2 2 0.0029 0.24 5.0 0.1 142 175 160 200 137 210 0.68 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 7_3 - 181 AAA_18 PF13238.1 129 3.3e-09 30.8 0.0 1 1 3.9e-11 6.4e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 5_1 - 205 adh_short PF00106.20 167 6.5e-23 75.1 0.0 1 1 4.8e-25 8e-23 74.8 0.0 47 166 5 127 1 128 0.96 # 242 # 856 # 1 # ID=5_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_102 - 526 AAA_13 PF13166.1 712 0.0043 9.1 17.5 1 2 2.3e-05 0.0037 9.3 2.9 365 468 251 356 202 376 0.54 # 84924 # 86501 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_102 - 526 AAA_13 PF13166.1 712 0.0043 9.1 17.5 2 2 0.00032 0.053 5.5 7.0 322 439 392 519 372 525 0.75 # 84924 # 86501 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_2 - 402 CbiA PF01656.18 195 1.8e-18 60.2 0.0 1 1 2.5e-20 4.2e-18 59.0 0.0 1 142 111 292 111 327 0.75 # 1567 # 2772 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_90 - 610 AAA_14 PF13173.1 128 2.4e-05 17.9 3.7 1 2 1.6e-07 2.6e-05 17.8 0.4 1 95 101 212 101 217 0.72 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_90 - 610 AAA_14 PF13173.1 128 2.4e-05 17.9 3.7 2 2 0.047 7.8 0.1 0.2 47 74 420 452 347 473 0.64 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_90 - 610 AAA PF00004.24 132 0.00036 14.4 2.2 1 1 6.2e-06 0.001 12.9 0.1 4 112 108 215 106 225 0.65 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 5_1 - 205 KR PF08659.5 181 1.4e-06 21.6 0.0 1 1 1.1e-08 1.8e-06 21.3 0.0 47 174 4 138 1 144 0.78 # 242 # 856 # 1 # ID=5_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_55 - 134 CobU PF02283.11 167 0.00065 12.7 0.2 1 1 7.2e-06 0.0012 11.9 0.0 64 112 80 129 59 133 0.70 # 39363 # 39764 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_32 - 278 N6_Mtase PF02384.11 311 5.3e-12 39.0 0.0 1 1 5.2e-14 8.6e-12 38.3 0.0 25 117 139 237 130 264 0.85 # 23536 # 24369 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_72 - 770 TraG-D_C PF12696.2 128 1.1e-19 64.2 0.0 1 1 1.6e-21 2.6e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_86 - 590 NAD_binding_2 PF03446.10 163 5.6e-07 23.1 0.0 1 1 6.8e-09 1.1e-06 22.2 0.0 3 77 313 388 311 433 0.82 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_2 - 402 AAA_31 PF13614.1 157 0.00017 15.2 0.0 1 1 5.5e-06 0.00091 12.8 0.0 108 147 235 273 231 279 0.86 # 1567 # 2772 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 7_3 - 181 AAA_33 PF13671.1 143 5e-10 33.0 0.0 1 1 4.3e-12 7e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_10 - 234 Methyltransf_26 PF13659.1 117 4.8e-11 36.4 0.3 1 2 6.5e-07 5.3e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_10 - 234 Methyltransf_26 PF13659.1 117 4.8e-11 36.4 0.3 2 2 4.1e-07 3.4e-05 17.5 0.1 4 44 174 213 171 227 0.80 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_32 - 278 Methyltransf_26 PF13659.1 117 8.9e-05 16.2 0.1 1 1 2.4e-06 0.0002 15.0 0.1 3 71 171 244 170 273 0.81 # 23536 # 24369 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_86 - 590 2-Hacid_dh_C PF02826.14 178 0.00022 14.0 0.0 1 1 2.4e-06 0.0004 13.2 0.0 29 61 304 336 293 360 0.82 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_73 - 1754 AAA_30 PF13604.1 196 2.3e-45 148.2 5.9 1 2 3.8e-07 6.2e-05 16.2 0.7 9 126 424 536 421 561 0.86 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_73 - 1754 AAA_30 PF13604.1 196 2.3e-45 148.2 5.9 2 2 7.6e-43 1.3e-40 132.7 0.4 2 186 971 1158 970 1162 0.94 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_86 - 590 ApbA PF02558.11 151 0.00014 15.0 0.1 1 1 1.5e-06 0.00024 14.2 0.1 1 46 314 361 314 397 0.81 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_52 - 880 FtsK_SpoIIIE PF01580.13 205 0.0002 14.5 0.0 1 1 2.7e-06 0.00045 13.3 0.0 39 63 480 506 466 508 0.85 # 35665 # 38304 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_90 - 610 ABC_tran PF00005.22 137 0.00016 15.6 0.0 1 1 3.1e-06 0.00052 13.9 0.0 6 42 97 133 93 209 0.74 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_10 - 234 Cons_hypoth95 PF03602.10 183 5e-06 19.6 0.0 1 2 0.00012 0.02 7.8 0.0 113 170 19 78 12 86 0.73 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_10 - 234 Cons_hypoth95 PF03602.10 183 5e-06 19.6 0.0 2 2 3.1e-05 0.0052 9.8 0.0 20 60 149 188 142 225 0.73 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_73 - 1754 AAA_19 PF13245.1 76 1.6e-06 21.5 1.9 1 1 4.5e-08 3.7e-06 20.3 0.5 8 74 984 1047 976 1050 0.71 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 7_3 - 181 AAA_19 PF13245.1 76 0.0007 13.0 0.0 1 1 3.5e-05 0.0029 11.0 0.0 15 33 5 22 2 36 0.85 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_52 - 880 AAA_10 PF12846.2 304 2.6e-45 148.7 0.0 1 1 4.9e-47 4.1e-45 148.1 0.0 1 294 481 773 481 779 0.85 # 35665 # 38304 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_72 - 770 AAA_10 PF12846.2 304 3.6e-09 30.0 0.0 1 2 1e-05 0.00084 12.4 0.0 3 43 187 227 186 260 0.92 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_72 - 770 AAA_10 PF12846.2 304 3.6e-09 30.0 0.0 2 2 1.1e-06 9.3e-05 15.5 0.0 201 296 398 494 282 499 0.85 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 5_1 - 205 adh_short_C2 PF13561.1 241 7.6e-23 75.1 0.0 1 1 5.1e-25 8.3e-23 74.9 0.0 40 239 4 200 1 202 0.94 # 242 # 856 # 1 # ID=5_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_86 - 590 ThiF PF00899.16 136 6.5e-22 71.4 0.0 1 1 8.3e-24 1.4e-21 70.4 0.0 3 129 312 445 310 451 0.86 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_72 - 770 TrwB_AAD_bind PF10412.4 386 1.1e-148 488.6 0.0 1 1 1.7e-150 1.4e-148 488.2 0.0 2 386 172 561 171 561 0.99 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_52 - 880 TrwB_AAD_bind PF10412.4 386 2.5e-05 16.6 0.2 1 1 8e-07 6.6e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 35665 # 38304 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_73 - 1754 AAA_11 PF13086.1 236 7.9e-05 15.9 2.7 1 2 9.3e-07 0.00015 15.0 0.0 2 72 971 1038 970 1065 0.82 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_73 - 1754 AAA_11 PF13086.1 236 7.9e-05 15.9 2.7 2 2 0.048 7.9 -0.5 0.0 3 34 1182 1212 1180 1328 0.69 # 55674 # 60935 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_72 - 770 T4SS-DNA_transf PF02534.9 469 1.5e-08 27.1 0.0 1 2 0.035 5.7 -1.1 0.0 128 199 260 330 249 359 0.73 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_72 - 770 T4SS-DNA_transf PF02534.9 469 1.5e-08 27.1 0.0 2 2 3.4e-10 5.6e-08 25.3 0.0 275 393 393 507 363 559 0.74 # 53365 # 55674 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_52 - 880 Pox_A32 PF04665.7 241 0.00012 15.1 0.0 1 1 1.5e-06 0.00025 14.0 0.0 6 40 474 508 470 523 0.82 # 35665 # 38304 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.542 1_86 - 590 TrkA_N PF02254.13 116 0.00053 13.6 0.1 1 1 1.5e-05 0.0025 11.4 0.1 2 35 315 349 314 434 0.80 # 71091 # 72860 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 7_3 - 181 AAA_24 PF13479.1 213 0.00016 14.9 0.0 1 1 1.2e-06 0.0002 14.5 0.0 6 33 3 34 1 99 0.87 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_90 - 610 NACHT PF05729.7 166 3.3e-15 49.7 0.1 1 1 8.6e-17 7.1e-15 48.7 0.1 5 161 107 244 103 249 0.83 # 74214 # 76043 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 7_3 - 181 NACHT PF05729.7 166 0.00014 15.2 0.1 1 1 4.2e-06 0.00035 13.9 0.0 2 21 2 21 1 29 0.91 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_10 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 1 2 0.023 3.8 0.6 0.0 53 80 4 30 2 38 0.91 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_10 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 2 2 6.9e-05 0.011 8.8 0.0 3 30 173 200 171 214 0.90 # 10049 # 10750 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 7_3 - 181 AAA_28 PF13521.1 163 0.00026 14.6 0.0 1 1 4.7e-06 0.00078 13.0 0.0 2 29 3 33 2 58 0.77 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 7_3 - 181 APS_kinase PF01583.15 157 2.2e-05 17.8 0.0 1 2 1e-05 0.0017 11.6 0.0 4 24 2 22 1 30 0.89 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 7_3 - 181 APS_kinase PF01583.15 157 2.2e-05 17.8 0.0 2 2 0.0021 0.35 4.1 0.1 34 72 107 147 91 157 0.86 # 1044 # 1586 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/348215da-2838-48e2-a93f-8e161c01b47a # Target file: checkm_output/bins/pm1738/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1738/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/348215da-2838-48e2-a93f-8e161c01b47a checkm_output/bins/pm1738/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:02 2020 # [ok]