# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_24 - 703 Mg_chelatase PF01078.16 207 0.0002 12.9 0.0 1 1 6.9e-06 0.00046 11.7 0.0 14 52 511 549 505 570 0.81 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 cobW PF02492.14 178 1.5e-06 20.1 0.0 1 1 4.1e-08 2.7e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 Parvo_NS1 PF01057.12 272 0.00057 11.1 0.0 1 1 1.4e-05 0.00096 10.4 0.0 104 138 148 182 140 188 0.90 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 IstB_IS21 PF01695.12 178 5.8e-66 213.6 0.0 1 1 4.4e-67 1.5e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 IstB_IS21 PF01695.12 178 1.8e-05 16.5 0.0 1 1 8.9e-07 3e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_11 - 206 MipZ PF09140.6 261 2.2e-13 42.2 0.9 1 2 1.9e-10 1.3e-08 26.5 0.1 2 46 3 45 2 57 0.84 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 2_11 - 206 MipZ PF09140.6 261 2.2e-13 42.2 0.9 2 2 8.9e-07 5.9e-05 14.5 0.1 96 141 72 117 47 129 0.82 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_17 - 238 3HCDH_N PF02737.13 180 0.00089 11.3 1.9 1 2 0.00032 0.022 6.8 0.1 68 118 33 83 18 86 0.84 # 18491 # 19204 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_17 - 238 3HCDH_N PF02737.13 180 0.00089 11.3 1.9 2 2 0.0023 0.15 4.0 0.2 41 80 143 180 111 210 0.68 # 18491 # 19204 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_11 - 332 AAA_2 PF07724.9 171 3.8e-06 19.2 0.0 1 1 1e-07 6.9e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 DUF87 PF01935.12 229 1.8e-06 20.3 0.0 1 1 9.7e-08 3.2e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 DUF87 PF01935.12 229 7.9e-05 14.9 0.1 1 1 5e-06 0.00017 13.8 0.1 24 44 520 540 512 551 0.92 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 AAA_22 PF13401.1 131 1.8e-07 23.7 0.0 1 1 2.4e-08 4.1e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AAA_22 PF13401.1 131 8.4e-07 21.6 0.0 1 2 1.7e-05 0.00028 13.4 0.1 4 28 101 125 98 148 0.75 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_7 - 260 AAA_22 PF13401.1 131 8.4e-07 21.6 0.0 2 2 0.0033 0.055 6.0 0.0 77 101 151 178 124 201 0.64 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 AAA_22 PF13401.1 131 1.5e-05 17.5 0.1 1 1 1.1e-05 0.00018 14.0 0.0 5 24 520 539 516 566 0.88 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_18 - 867 AAA_22 PF13401.1 131 3.9e-05 16.1 0.0 1 2 0.071 1.2 1.7 0.0 94 114 153 172 75 184 0.83 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_18 - 867 AAA_22 PF13401.1 131 3.9e-05 16.1 0.0 2 2 0.0001 0.0017 10.9 0.0 5 28 492 515 489 549 0.85 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 3_5 - 478 DNA_methylase PF00145.12 335 1.3e-79 260.1 0.0 1 1 4.4e-81 3e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 2316 # 3749 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 2_24 - 703 AAA_17 PF13207.1 121 1.2e-07 24.9 0.0 1 1 2.8e-08 3.7e-07 23.4 0.0 2 88 522 606 521 642 0.65 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 AAA_17 PF13207.1 121 0.00025 14.2 0.1 1 1 4.7e-05 0.00064 12.9 0.1 2 40 161 195 160 229 0.75 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AAA_17 PF13207.1 121 0.00026 14.2 0.0 1 1 3.3e-05 0.00044 13.4 0.0 2 26 104 131 103 216 0.74 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_11 - 206 AAA_17 PF13207.1 121 0.00031 13.9 0.0 1 1 3.9e-05 0.00052 13.2 0.0 9 78 12 91 11 151 0.68 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_18 - 867 AAA_17 PF13207.1 121 0.00055 13.1 4.6 1 1 0.00038 0.005 10.0 0.0 3 21 495 513 494 565 0.80 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_24 - 703 AAA_21 PF13304.1 303 2.5e-09 29.8 0.4 1 1 1.8e-09 1.2e-07 24.2 0.4 3 278 523 668 522 683 0.74 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 Miro PF08477.8 119 0.00032 13.6 0.0 1 1 1.2e-05 0.00081 12.3 0.0 1 24 521 544 521 577 0.74 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 MobB PF03205.9 140 6.6e-06 18.2 1.8 1 1 3e-07 1e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_11 - 206 MobB PF03205.9 140 0.00041 12.4 0.9 1 1 0.00011 0.0036 9.3 0.9 10 100 12 83 2 102 0.68 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 2_11 - 206 ArsA_ATPase PF02374.10 305 2.7e-07 22.2 0.6 1 1 8.6e-09 5.8e-07 21.1 0.2 5 45 6 45 1 54 0.86 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 260 PhoH PF02562.11 205 2.1e-07 22.7 0.1 1 1 1e-08 3.3e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 PhoH PF02562.11 205 0.0002 12.9 0.0 1 1 1.1e-05 0.00038 12.1 0.0 14 45 153 184 143 210 0.79 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 AAA_7 PF12775.2 272 6.6e-05 14.4 0.0 1 1 2.3e-06 0.00016 13.2 0.0 25 64 150 189 139 209 0.86 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AFG1_ATPase PF03969.11 362 0.0002 12.5 0.0 1 1 5.8e-06 0.00039 11.6 0.0 64 214 103 251 81 258 0.78 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 T2SE PF00437.15 272 1.9e-52 170.1 0.1 1 1 6.5e-54 2.2e-52 169.9 0.1 3 271 10 311 8 312 0.94 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 T2SE PF00437.15 272 1.3e-05 16.5 0.0 1 1 6.8e-07 2.3e-05 15.7 0.0 115 160 506 551 463 570 0.84 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 Zeta_toxin PF06414.7 201 1e-06 20.3 0.0 1 1 2.7e-08 1.8e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 SMC_N PF02463.14 220 1.6e-10 32.9 0.1 1 1 2.6e-10 1.7e-08 26.2 0.1 136 212 629 699 496 701 0.77 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_11 - 206 VirC1 PF07015.6 231 5.9e-15 47.2 0.1 1 1 1.6e-16 1.1e-14 46.4 0.1 1 124 1 115 1 173 0.80 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 2_11 - 206 Fer4_NifH PF00142.13 273 6.7e-05 14.5 0.0 1 1 1.5e-06 0.0001 13.9 0.0 8 64 10 65 3 92 0.73 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_11 - 332 Arch_ATPase PF01637.13 234 6.2e-06 18.4 0.0 1 1 1.6e-07 1.1e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 AAA_16 PF13191.1 185 4.5e-07 22.3 0.0 1 1 5.1e-08 1.1e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AAA_16 PF13191.1 185 9.8e-06 18.0 2.4 1 1 3.6e-06 8e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 AAA_16 PF13191.1 185 1.1e-05 17.8 0.0 1 1 1.4e-06 3.1e-05 16.3 0.0 15 44 511 539 506 566 0.84 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 AAA_23 PF13476.1 202 1.4e-05 17.8 0.1 1 1 2e-06 3.4e-05 16.6 0.1 9 42 506 542 500 597 0.88 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 AAA_23 PF13476.1 202 0.00031 13.4 0.1 1 1 3.8e-05 0.00064 12.4 0.1 19 39 158 178 149 184 0.85 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_18 - 867 AAA_23 PF13476.1 202 0.0032 10.1 0.0 1 1 0.00019 0.0032 10.1 0.0 22 39 494 511 464 521 0.84 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_17 - 238 AAA_23 PF13476.1 202 0.05 6.2 13.9 1 1 0.00037 0.0061 9.2 1.7 97 196 67 185 58 218 0.59 # 18491 # 19204 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_11 - 332 AAA_18 PF13238.1 129 3.2e-06 19.9 0.0 1 1 2e-07 6.5e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 AAA_18 PF13238.1 129 1.3e-05 17.9 0.1 1 1 1.5e-06 5.2e-05 15.9 0.0 1 21 522 542 522 587 0.77 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_11 - 206 CbiA PF01656.18 195 8.2e-27 86.2 0.9 1 1 4e-28 1.3e-26 85.5 0.9 1 142 4 122 4 173 0.75 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 260 CbiA PF01656.18 195 0.00065 11.5 0.0 1 1 2.5e-05 0.00084 11.1 0.0 3 42 105 145 104 254 0.75 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 KaiC PF06745.8 227 0.00011 13.6 0.0 1 1 3e-06 0.0002 12.8 0.0 16 53 155 190 148 240 0.77 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AAA_14 PF13173.1 128 2.4e-07 23.1 0.0 1 1 5.1e-08 1.2e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 AAA_14 PF13173.1 128 0.00011 14.4 0.0 1 2 7.2e-05 0.0016 10.7 0.0 4 47 521 564 518 584 0.73 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 AAA_14 PF13173.1 128 0.00011 14.4 0.0 2 2 0.092 2 0.7 0.0 53 93 638 681 629 695 0.65 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 1 2 0.0067 0.15 4.3 0.0 64 96 135 165 98 166 0.69 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 2 2 9.2e-05 0.0021 10.4 0.0 2 35 158 191 157 215 0.80 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 GvpD PF07088.6 484 1.7e-06 18.9 0.0 1 1 3.9e-08 2.6e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 AAA_29 PF13555.1 62 9.6e-06 17.5 0.0 1 1 6.9e-07 2.3e-05 16.3 0.0 14 40 511 536 505 551 0.79 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 AAA_29 PF13555.1 62 0.00067 11.6 0.0 1 1 4.7e-05 0.0016 10.4 0.0 19 43 157 178 145 188 0.75 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AAA PF00004.24 132 1.4e-08 27.3 0.0 1 1 8.2e-10 2.7e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 AAA PF00004.24 132 1.7e-05 17.4 0.1 1 2 0.00016 0.0054 9.3 0.0 3 22 524 543 522 584 0.76 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 AAA PF00004.24 132 1.7e-05 17.4 0.1 2 2 0.0022 0.075 5.6 0.0 44 74 634 663 618 694 0.77 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_7 - 260 Bac_DnaA PF00308.13 219 3.4e-09 28.9 0.0 1 1 7.8e-11 5.2e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_4 - 93 Val_tRNA-synt_C PF10458.4 66 0.00021 13.8 0.6 1 1 3.1e-06 0.00021 13.8 0.6 1 23 58 80 58 89 0.87 # 1572 # 1850 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_11 - 332 Sigma54_activat PF00158.21 168 5.6e-06 18.2 0.0 1 1 1.6e-07 1e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 MMR_HSR1 PF01926.18 116 0.00029 13.2 0.0 1 1 7.1e-06 0.00048 12.5 0.0 2 41 161 205 160 310 0.84 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 DUF258 PF03193.11 161 7.5e-05 14.3 0.0 1 1 6.1e-06 0.00014 13.5 0.0 29 61 151 184 129 224 0.81 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 DUF258 PF03193.11 161 0.00014 13.4 0.0 1 1 1.1e-05 0.00025 12.6 0.0 26 59 92 125 80 153 0.82 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 DUF258 PF03193.11 161 0.00024 12.6 0.0 1 1 2.2e-05 0.0005 11.6 0.0 25 57 508 541 491 554 0.80 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_11 - 206 AAA_31 PF13614.1 157 7.4e-11 34.6 0.1 1 2 8.7e-10 5.8e-08 25.2 0.0 1 42 2 42 2 64 0.86 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 2_11 - 206 AAA_31 PF13614.1 157 7.4e-11 34.6 0.1 2 2 0.00023 0.015 7.5 0.0 116 152 70 108 59 112 0.85 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 2_24 - 703 NTPase_1 PF03266.10 168 8e-05 14.7 0.0 1 1 5e-06 0.00017 13.7 0.0 1 34 521 556 521 578 0.81 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_7 - 260 NTPase_1 PF03266.10 168 0.00015 13.8 0.1 1 2 0.003 0.1 4.6 0.1 2 30 104 132 103 143 0.82 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_7 - 260 NTPase_1 PF03266.10 168 0.00015 13.8 0.1 2 2 0.0006 0.02 6.9 0.0 87 108 155 176 141 202 0.77 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 AAA_33 PF13671.1 143 0.00024 13.3 0.0 1 1 5.9e-06 0.0004 12.6 0.0 2 26 161 188 160 256 0.81 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 AAA_30 PF13604.1 196 0.0001 14.3 0.1 1 2 4.7e-05 0.0016 10.4 0.1 11 51 151 190 145 197 0.80 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 AAA_30 PF13604.1 196 0.0001 14.3 0.1 2 2 0.024 0.79 1.6 0.0 121 178 204 258 191 272 0.77 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 AAA_30 PF13604.1 196 0.0006 11.7 0.0 1 1 3.2e-05 0.0011 10.9 0.0 20 48 521 549 513 555 0.79 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 FtsK_SpoIIIE PF01580.13 205 5.7e-07 21.5 0.0 1 1 5.1e-08 1.1e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_18 - 867 FtsK_SpoIIIE PF01580.13 205 7.9e-06 17.8 0.0 1 1 8.1e-07 1.8e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_24 - 703 FtsK_SpoIIIE PF01580.13 205 3.6e-05 15.6 0.0 1 1 2.8e-06 6.3e-05 14.8 0.0 29 58 510 539 500 569 0.87 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 ABC_tran PF00005.22 137 3.9e-33 107.0 0.0 1 1 3.8e-34 6.4e-33 106.3 0.0 1 137 509 658 509 658 0.96 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 ABC_tran PF00005.22 137 1e-06 21.4 0.0 1 1 9.9e-08 1.7e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 ABC_tran PF00005.22 137 0.00035 13.2 0.2 1 1 8.1e-05 0.0014 11.3 0.1 8 31 98 121 95 132 0.86 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_18 - 867 ABC_tran PF00005.22 137 0.00046 12.9 0.0 1 1 9.1e-05 0.0015 11.2 0.0 14 38 494 518 481 550 0.83 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_11 - 332 ATP-synt_ab PF00006.20 215 0.00037 12.4 0.0 1 1 8.8e-06 0.00059 11.7 0.0 16 62 159 205 151 247 0.86 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 AAA_19 PF13245.1 76 4.3e-05 15.6 0.1 1 1 4.1e-06 9.1e-05 14.6 0.1 9 35 519 543 512 554 0.79 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 AAA_19 PF13245.1 76 0.00043 12.4 0.1 1 1 4.2e-05 0.00093 11.3 0.1 5 48 153 191 149 224 0.78 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 AAA_19 PF13245.1 76 0.00045 12.3 0.2 1 1 7.9e-05 0.0018 10.5 0.0 11 35 103 126 95 157 0.81 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_18 - 867 AAA_10 PF12846.2 304 1.7e-35 115.2 0.1 1 1 3.2e-36 5.3e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_7 - 260 AAA_10 PF12846.2 304 2.5e-05 16.1 0.2 1 2 0.058 0.96 1.1 0.0 106 155 28 69 4 89 0.61 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_7 - 260 AAA_10 PF12846.2 304 2.5e-05 16.1 0.2 2 2 1.8e-05 0.00029 12.6 0.1 3 35 103 135 101 172 0.84 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 AAA_10 PF12846.2 304 0.00018 13.3 0.0 1 1 1.6e-05 0.00027 12.7 0.0 3 29 160 185 158 233 0.81 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 AAA_10 PF12846.2 304 0.00053 11.8 0.1 1 1 0.00011 0.0018 10.0 0.1 3 33 521 551 519 562 0.81 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 SbcCD_C PF13558.1 90 0.00029 13.1 0.1 1 1 2.2e-05 0.0015 10.9 0.1 55 88 646 672 612 674 0.76 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 ResIII PF04851.10 184 4.1e-06 19.1 0.0 1 1 9.6e-08 6.5e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 DUF3584 PF12128.3 1201 0.0003 10.5 0.1 1 1 6.3e-06 0.00043 10.0 0.1 11 37 514 539 506 543 0.91 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_11 - 332 DUF2075 PF09848.4 352 6.1e-05 14.4 0.0 1 1 1.3e-06 8.7e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 DEAD PF00270.24 169 2e-06 19.7 0.0 1 1 5.7e-08 3.8e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_24 - 703 DUF853 PF05872.7 504 0.00048 10.8 0.0 1 1 1.2e-05 0.00083 10.0 0.0 22 54 520 552 507 563 0.80 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_18 - 867 TrwB_AAD_bind PF10412.4 386 6.2e-07 20.6 1.6 1 2 9.8e-07 3.3e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_18 - 867 TrwB_AAD_bind PF10412.4 386 6.2e-07 20.6 1.6 2 2 0.0028 0.094 3.5 0.0 102 168 741 806 720 812 0.79 # 19222 # 21822 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_11 - 332 TrwB_AAD_bind PF10412.4 386 9.2e-06 16.8 0.1 1 1 4.2e-07 1.4e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 Sigma54_activ_2 PF14532.1 138 1.5e-06 20.6 0.0 1 1 1e-07 3.4e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 Sigma54_activ_2 PF14532.1 138 0.00026 13.4 0.0 1 1 1.3e-05 0.00042 12.7 0.0 9 64 87 144 84 229 0.70 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 Pox_A32 PF04665.7 241 6.7e-05 14.6 0.0 1 1 1.7e-06 0.00011 13.8 0.0 12 46 157 191 150 210 0.85 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 GTP_EFTU PF00009.22 188 0.00015 13.6 0.2 1 1 3.5e-06 0.00023 12.9 0.2 2 32 157 187 156 205 0.83 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 1 2 3.5e-06 0.00023 13.7 0.0 1 25 161 185 161 242 0.75 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 2 2 0.027 1.8 1.2 0.1 69 100 290 322 281 328 0.78 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 UPF0079 PF02367.12 123 4.1e-06 18.8 0.0 1 1 1.2e-07 8.2e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_11 - 206 AAA_24 PF13479.1 213 3e-06 19.3 0.2 1 1 1.3e-07 4.3e-06 18.7 0.2 11 88 10 94 3 98 0.86 # 8029 # 8646 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 260 AAA_24 PF13479.1 213 0.00088 11.2 0.1 1 1 6.1e-05 0.002 10.0 0.1 5 23 103 121 99 127 0.85 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_11 - 332 Myosin_head PF00063.16 689 0.00011 12.7 0.0 1 1 2.2e-06 0.00015 12.2 0.0 84 110 157 183 147 209 0.90 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_11 - 332 NACHT PF05729.7 166 5.8e-05 15.1 0.0 1 1 5.8e-06 0.00013 14.0 0.0 1 27 159 185 159 188 0.90 # 13191 # 14186 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 260 NACHT PF05729.7 166 8.6e-05 14.6 0.0 1 1 6.2e-06 0.00014 13.9 0.0 3 49 104 151 102 200 0.81 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 NACHT PF05729.7 166 0.00061 11.8 0.7 1 1 4.7e-05 0.0011 11.0 0.1 3 21 522 540 520 548 0.89 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_7 - 260 AAA_25 PF13481.1 194 4.8e-07 21.7 0.1 1 1 4.4e-08 1.5e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_24 - 703 AAA_25 PF13481.1 194 0.00013 13.7 0.1 1 1 7.4e-06 0.00025 12.8 0.1 30 54 516 540 508 545 0.89 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 2_24 - 703 AAA_28 PF13521.1 163 4.8e-05 15.7 0.5 1 1 2.6e-06 8.6e-05 14.9 0.5 2 19 522 539 521 549 0.91 # 16761 # 18869 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.381 1_7 - 260 AAA_28 PF13521.1 163 0.00017 13.9 0.0 1 1 1e-05 0.00033 13.0 0.0 1 49 103 156 103 171 0.73 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_7 - 260 AAA_5 PF07728.9 139 1.2e-05 17.4 0.0 1 1 4.6e-07 3.1e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 9119 # 9898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fb2586cd-f407-46f2-881b-930af33a8f51 # Target file: checkm_output/bins/pm1736/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1736/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fb2586cd-f407-46f2-881b-930af33a8f51 checkm_output/bins/pm1736/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:00:01 2020 # [ok]