# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 579 Seryl_tRNA_N PF02403.17 108 0.00068 11.8 8.8 1 3 0.0043 0.25 3.6 0.1 39 104 280 346 259 350 0.90 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 Seryl_tRNA_N PF02403.17 108 0.00068 11.8 8.8 2 3 0.0014 0.077 5.2 0.1 27 59 377 409 365 430 0.85 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 Seryl_tRNA_N PF02403.17 108 0.00068 11.8 8.8 3 3 0.001 0.057 5.6 1.7 17 107 449 538 443 539 0.75 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_10 - 402 MipZ PF09140.6 261 1.1e-06 20.0 0.0 1 2 0.0027 0.15 3.1 0.0 3 50 111 163 109 193 0.73 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 1_10 - 402 MipZ PF09140.6 261 1.1e-06 20.0 0.0 2 2 8.7e-07 4.9e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 2_14 - 152 T2SE PF00437.15 272 4.5e-06 17.8 0.0 1 1 9.8e-08 5.6e-06 17.5 0.0 114 222 22 143 5 149 0.82 # 11086 # 11541 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.443 3_1 - 579 AAA_13 PF13166.1 712 0.002 8.6 17.5 1 2 2.6e-05 0.0015 9.1 2.7 365 467 304 408 255 421 0.52 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 AAA_13 PF13166.1 712 0.002 8.6 17.5 2 2 0.00045 0.026 5.0 7.1 322 439 445 572 440 578 0.74 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_10 - 402 CbiA PF01656.18 195 8.6e-19 59.8 0.0 1 1 2.8e-20 1.6e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 2_9 - 129 Ribosomal_S20p PF01649.13 84 0.00016 14.2 0.1 1 1 4.8e-06 0.00027 13.4 0.1 6 59 56 109 53 118 0.75 # 7989 # 8375 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_10 - 402 AAA_31 PF13614.1 157 5.4e-05 15.3 0.0 1 1 5.5e-06 0.00031 12.8 0.0 108 147 235 273 230 279 0.86 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/98b2db5c-0ced-4b71-ae8a-d78f45060632 # Target file: checkm_output/bins/pm1730/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1730/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/98b2db5c-0ced-4b71-ae8a-d78f45060632 checkm_output/bins/pm1730/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:59 2020 # [ok]