# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 228 UPF0020 PF01170.13 180 1.8e-05 17.6 0.0 1 2 0.00031 0.04 6.7 0.0 103 119 17 33 4 88 0.74 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 228 UPF0020 PF01170.13 180 1.8e-05 17.6 0.0 2 2 6.2e-05 0.0079 9.0 0.0 28 54 163 189 158 221 0.67 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_22 - 209 MipZ PF09140.6 261 2.4e-21 69.2 0.5 1 2 1.2e-12 1.5e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 MipZ PF09140.6 261 2.4e-21 69.2 0.5 2 2 1.6e-12 2e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 YhjQ PF06564.7 244 3e-05 16.7 0.3 1 2 1.8e-06 0.00023 13.8 0.3 4 38 3 37 1 50 0.89 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 YhjQ PF06564.7 244 3e-05 16.7 0.3 2 2 0.029 3.8 0.0 0.0 108 144 69 103 44 113 0.78 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_6 - 565 3HCDH_N PF02737.13 180 0.0041 10.0 6.4 1 2 0.0047 0.61 2.9 2.4 1 30 99 128 99 134 0.93 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 3HCDH_N PF02737.13 180 0.0041 10.0 6.4 2 2 9e-05 0.012 8.6 0.1 2 39 272 309 271 348 0.73 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 3.3e-08 26.0 6.6 1 3 3.5e-10 4.5e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 3.3e-08 26.0 6.6 2 3 0.038 4.9 -0.9 0.0 3 31 273 301 271 315 0.84 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 3.3e-08 26.0 6.6 3 3 0.018 2.4 0.1 0.1 349 385 393 429 387 433 0.77 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_2 PF07992.9 201 1e-43 142.8 0.0 1 1 3.2e-45 4.2e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_79 - 383 DUF87 PF01935.12 229 4.5e-05 16.6 0.0 1 1 1.3e-06 8.3e-05 15.7 0.0 28 51 162 186 161 192 0.83 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_43 - 768 DUF87 PF01935.12 229 0.00039 13.5 0.1 1 2 5e-05 0.0032 10.5 0.0 16 40 130 153 120 168 0.80 # 33195 # 35498 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_43 - 768 DUF87 PF01935.12 229 0.00039 13.5 0.1 2 2 0.082 5.3 0.0 0.1 111 173 640 701 622 729 0.63 # 33195 # 35498 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_79 - 383 NB-ARC PF00931.17 287 0.00072 11.7 0.0 1 1 1.1e-05 0.0014 10.8 0.0 18 49 156 185 145 193 0.79 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_79 - 383 AAA_22 PF13401.1 131 8.9e-06 19.2 0.0 1 1 3.1e-07 2e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 AAA_22 PF13401.1 131 1.5e-05 18.4 0.0 1 1 4.5e-07 2.9e-05 17.5 0.0 4 49 229 281 225 345 0.80 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_6 - 565 DFP PF04127.10 185 0.001 12.0 2.4 1 2 0.00039 0.051 6.4 0.4 28 51 105 128 99 156 0.83 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DFP PF04127.10 185 0.001 12.0 2.4 2 2 0.0014 0.18 4.7 0.1 32 53 281 302 276 336 0.77 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_96 - 432 YjeF_N PF03853.10 169 0.0013 11.6 0.0 1 1 2e-05 0.0026 10.6 0.0 7 70 289 353 284 410 0.73 # 84051 # 85346 # -1 # ID=1_96;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_22 - 209 SRP54 PF00448.17 196 3.2e-07 23.2 0.1 1 1 1.5e-08 2e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_6 - 565 NAD_binding_7 PF13241.1 103 4.4e-07 23.4 1.2 1 2 5.4e-05 0.007 9.9 0.2 9 38 99 128 96 184 0.89 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_7 PF13241.1 103 4.4e-07 23.4 1.2 2 2 1.4e-05 0.0018 11.8 0.1 8 41 270 306 264 380 0.74 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_29 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 119.5 0.0 1 2 2e-15 2.6e-13 43.2 0.0 1 113 21 123 21 133 0.89 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 119.5 0.0 2 2 5.9e-25 7.6e-23 74.4 0.0 169 228 141 200 128 203 0.91 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_22 - 209 AAA_17 PF13207.1 121 2e-05 18.7 0.0 1 1 1.2e-06 5.3e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_79 - 383 AAA_17 PF13207.1 121 0.00014 15.9 0.0 1 1 8.3e-06 0.00035 14.7 0.0 3 39 161 200 161 251 0.72 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 AAA_17 PF13207.1 121 0.00022 15.3 0.2 1 1 1.4e-05 0.00061 13.9 0.1 1 32 231 264 231 401 0.84 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_22 - 209 MobB PF03205.9 140 7.3e-05 15.8 0.1 1 1 1.6e-06 0.00021 14.3 0.0 10 42 11 41 1 46 0.79 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 ArsA_ATPase PF02374.10 305 5.6e-08 25.4 0.9 1 3 1.2e-09 1.5e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 ArsA_ATPase PF02374.10 305 5.6e-08 25.4 0.9 2 3 0.053 6.9 -1.2 0.0 121 135 69 85 47 86 0.75 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 ArsA_ATPase PF02374.10 305 5.6e-08 25.4 0.9 3 3 0.075 9.7 -1.7 0.0 205 234 132 161 118 202 0.65 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_79 - 383 PhoH PF02562.11 205 0.00012 14.6 0.0 1 1 2.3e-06 0.0003 13.3 0.0 15 60 153 198 141 230 0.86 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 T2SE PF00437.15 272 1.2e-37 122.5 0.0 1 1 2.9e-39 1.9e-37 121.9 0.0 66 269 161 378 97 380 0.87 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_79 - 383 T2SE PF00437.15 272 4.3e-35 114.1 0.0 1 1 1e-36 6.4e-35 113.6 0.0 109 261 142 292 23 309 0.78 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 565 NAD_binding_8 PF13450.1 68 4.5e-05 16.7 1.2 1 2 3.5e-07 4.5e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_8 PF13450.1 68 4.5e-05 16.7 1.2 2 2 0.041 5.3 0.5 0.2 1 25 274 298 274 303 0.81 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 F420_oxidored PF03807.12 96 0.0091 9.7 4.1 1 2 0.0023 0.3 4.9 1.2 2 31 100 126 99 131 0.87 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 F420_oxidored PF03807.12 96 0.0091 9.7 4.1 2 2 0.0075 0.97 3.3 0.1 1 34 271 300 271 323 0.87 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 209 VirC1 PF07015.6 231 4.4e-09 29.0 0.0 1 1 7.1e-11 9.2e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 Fer4_NifH PF00142.13 273 9.5e-05 14.9 0.2 1 1 2.3e-06 0.0003 13.3 0.0 8 38 9 39 2 46 0.89 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_79 - 383 AAA_16 PF13191.1 185 1e-05 18.8 0.1 1 1 6.4e-07 4.1e-05 16.9 0.0 25 57 158 193 148 331 0.77 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 AAA_16 PF13191.1 185 0.00012 15.4 0.0 1 1 3.4e-06 0.00022 14.5 0.0 23 54 228 259 217 336 0.87 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_79 - 383 AAA_23 PF13476.1 202 3.2e-05 17.6 0.1 1 1 1.1e-06 7.2e-05 16.4 0.0 20 40 158 178 144 206 0.85 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 AAA_23 PF13476.1 202 0.00034 14.2 0.0 1 1 1e-05 0.00065 13.3 0.0 19 37 229 247 211 262 0.86 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_79 - 383 AAA_18 PF13238.1 129 8.4e-06 19.4 0.0 1 1 2.3e-07 1.5e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 AAA_18 PF13238.1 129 0.00094 12.8 0.2 1 1 3.4e-05 0.0022 11.6 0.2 1 18 232 249 232 267 0.86 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_22 - 209 CbiA PF01656.18 195 2.3e-22 72.6 0.0 1 1 3.1e-24 4e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_6 - 565 HI0933_like PF03486.9 409 2.9e-08 25.8 3.7 1 2 1.2e-06 0.00015 13.5 2.5 2 33 99 130 98 138 0.91 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 HI0933_like PF03486.9 409 2.9e-08 25.8 3.7 2 2 7.2e-06 0.00093 10.9 0.0 82 164 284 366 276 385 0.83 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_94 - 503 AAA_29 PF13555.1 62 2.6e-05 17.0 0.0 1 1 1.1e-06 6.8e-05 15.7 0.0 20 40 227 246 217 262 0.80 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_79 - 383 AAA_29 PF13555.1 62 2.8e-05 16.9 0.0 1 1 1.1e-06 6.9e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 565 FAD_binding_2 PF00890.19 417 5.5e-06 18.6 4.7 1 3 4.3e-08 5.5e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 5.5e-06 18.6 4.7 2 3 0.034 4.4 -0.8 0.1 143 204 311 369 297 388 0.72 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 5.5e-06 18.6 4.7 3 3 0.074 9.6 -1.9 0.0 376 402 388 408 377 424 0.82 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_79 - 383 Sigma54_activat PF00158.21 168 0.00083 12.1 0.0 1 1 1.2e-05 0.0015 11.2 0.0 26 46 161 181 145 194 0.82 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 565 Pyr_redox_3 PF13738.1 203 1.6e-17 57.4 0.1 1 2 4.4e-14 5.7e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_3 PF13738.1 203 1.6e-17 57.4 0.1 2 2 9e-07 0.00012 15.5 0.0 93 147 320 375 309 430 0.76 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_43 - 768 TraG-D_C PF12696.2 128 6.4e-08 25.8 0.2 1 1 5e-10 6.4e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 33195 # 35498 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_22 - 209 AAA_31 PF13614.1 157 5.5e-06 19.6 0.0 1 2 2.5e-07 3.2e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 AAA_31 PF13614.1 157 5.5e-06 19.6 0.0 2 2 0.055 7.1 -0.2 0.0 109 127 68 86 62 113 0.68 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_79 - 383 AAA_33 PF13671.1 143 0.00078 12.6 0.1 1 1 1.8e-05 0.0023 11.1 0.0 3 21 161 179 159 194 0.90 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 38.0 0.1 1 2 2.1e-07 2.7e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 38.0 0.1 2 2 9.7e-08 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_94 - 503 AAA_30 PF13604.1 196 2.9e-07 23.5 0.0 1 1 4.1e-09 5.2e-07 22.7 0.0 2 45 213 256 212 263 0.90 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_79 - 383 FtsK_SpoIIIE PF01580.13 205 0.00081 12.1 0.0 1 1 1e-05 0.0014 11.4 0.0 40 63 159 182 122 227 0.87 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_79 - 383 ABC_tran PF00005.22 137 3.1e-05 17.6 0.1 1 1 1.3e-06 8.3e-05 16.2 0.0 15 34 161 180 150 197 0.87 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 503 ABC_tran PF00005.22 137 0.00042 13.9 0.0 1 1 1.2e-05 0.00076 13.1 0.0 13 40 231 258 226 364 0.92 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_6 - 565 K_oxygenase PF13434.1 341 7.3e-06 18.3 0.0 1 3 0.0039 0.51 2.4 0.0 187 220 94 125 59 130 0.79 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 7.3e-06 18.3 0.0 2 3 3.3e-06 0.00043 12.5 0.0 132 231 218 308 202 332 0.82 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 7.3e-06 18.3 0.0 3 3 0.057 7.4 -1.4 0.0 132 160 346 369 314 377 0.67 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_29 - 228 Cons_hypoth95 PF03602.10 183 1.6e-05 17.6 0.0 1 2 0.0004 0.051 6.2 0.0 112 146 18 54 9 82 0.65 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 228 Cons_hypoth95 PF03602.10 183 1.6e-05 17.6 0.0 2 2 4e-05 0.0052 9.4 0.0 41 62 162 183 145 218 0.78 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_94 - 503 AAA_19 PF13245.1 76 7.8e-05 15.7 0.8 1 1 2.6e-06 0.00017 14.6 0.1 4 37 222 256 219 271 0.70 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_22 - 209 AAA_19 PF13245.1 76 0.00037 13.5 0.1 1 2 0.00019 0.012 8.6 0.0 20 48 11 35 9 44 0.84 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_22 - 209 AAA_19 PF13245.1 76 0.00037 13.5 0.1 2 2 0.021 1.4 2.1 0.0 42 63 135 158 118 184 0.76 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_65 - 1015 AAA_10 PF12846.2 304 2.4e-31 102.5 0.0 1 1 1.5e-32 4.8e-31 101.5 0.0 8 303 502 898 498 899 0.89 # 55009 # 58053 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.566 1_43 - 768 AAA_10 PF12846.2 304 1.9e-06 20.7 0.1 1 1 1.2e-07 3.9e-06 19.7 0.1 2 292 137 506 136 516 0.69 # 33195 # 35498 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_79 - 383 AAA_10 PF12846.2 304 2.9e-06 20.1 0.0 1 2 3.8e-06 0.00012 14.8 0.0 3 27 159 183 157 197 0.87 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_79 - 383 AAA_10 PF12846.2 304 2.9e-06 20.1 0.0 2 2 0.015 0.47 3.0 0.0 193 248 290 348 256 352 0.78 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_22 - 209 AAA_10 PF12846.2 304 0.0002 14.1 0.0 1 1 1e-05 0.00033 13.4 0.0 11 39 11 39 3 66 0.90 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_6 - 565 FAD_oxidored PF12831.2 428 3.8e-06 19.4 3.6 1 1 2.9e-08 3.8e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 5.4e-09 28.6 11.7 1 3 1.4e-08 1.8e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 5.4e-09 28.6 11.7 2 3 0.032 4.1 -0.6 0.1 3 31 273 301 271 307 0.75 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 5.4e-09 28.6 11.7 3 3 9.4e-07 0.00012 14.3 0.5 152 208 314 372 307 433 0.74 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 3.7e-05 16.8 2.8 1 3 0.0081 1.1 2.3 0.1 1 41 101 135 101 162 0.81 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 3.7e-05 16.8 2.8 2 3 0.034 4.3 0.3 0.0 134 155 218 241 202 242 0.72 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 3.7e-05 16.8 2.8 3 3 6.6e-06 0.00086 12.4 0.1 112 155 321 366 311 367 0.85 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_94 - 503 DEAD PF00270.24 169 0.00093 12.0 0.0 1 1 1.1e-05 0.0014 11.4 0.0 2 41 215 256 214 325 0.82 # 82016 # 83524 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.548 1_6 - 565 Pyr_redox PF00070.22 80 4.6e-20 65.1 6.0 1 2 1.4e-06 0.00018 15.2 1.5 1 31 99 129 99 131 0.96 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox PF00070.22 80 4.6e-20 65.1 6.0 2 2 6.2e-18 8e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 283 Methyltransf_27 PF13708.1 194 5.5e-67 218.3 0.0 1 1 5.8e-69 7.4e-67 217.9 0.0 2 194 85 278 84 278 0.96 # 27345 # 28193 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_43 - 768 TrwB_AAD_bind PF10412.4 386 6.5e-07 21.5 0.2 1 2 0.00021 0.027 6.3 0.0 11 32 132 153 126 164 0.80 # 33195 # 35498 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_43 - 768 TrwB_AAD_bind PF10412.4 386 6.5e-07 21.5 0.2 2 2 2.5e-06 0.00032 12.6 0.1 260 332 452 525 435 578 0.75 # 33195 # 35498 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_29 - 228 MethyltransfD12 PF02086.10 260 0.00059 12.6 0.0 1 2 0.018 2.3 0.8 0.0 175 188 18 31 8 71 0.83 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 228 MethyltransfD12 PF02086.10 260 0.00059 12.6 0.0 2 2 4e-05 0.0052 9.5 0.0 20 46 163 189 148 197 0.78 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_79 - 383 RNA_helicase PF00910.17 107 5.1e-05 16.7 0.0 1 1 8.3e-07 0.00011 15.7 0.0 2 28 161 187 160 202 0.83 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 565 AlaDh_PNT_C PF01262.16 168 3.1e-05 16.9 3.1 1 2 0.00051 0.066 6.0 0.8 15 50 92 127 89 130 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 AlaDh_PNT_C PF01262.16 168 3.1e-05 16.9 3.1 2 2 2.1e-05 0.0027 10.5 0.1 16 58 265 307 257 339 0.84 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_104 - 214 TIGR00922 TIGR00922 172 0.00039 13.3 0.0 1 1 3.6e-06 0.00046 13.0 0.0 54 104 105 155 57 176 0.87 # 92872 # 93513 # -1 # ID=1_104;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.542 1_79 - 383 NACHT PF05729.7 166 0.0013 11.7 0.0 1 1 1.8e-05 0.0023 10.8 0.0 4 27 161 184 159 193 0.84 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 3_1 - 236 AAA_25 PF13481.1 194 6.7e-25 80.8 0.0 1 1 2.1e-26 9.2e-25 80.4 0.0 48 193 1 140 1 141 0.86 # 137 # 844 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 1_79 - 383 AAA_25 PF13481.1 194 6.3e-07 22.2 0.0 1 1 2.3e-08 1e-06 21.6 0.0 21 73 146 196 127 236 0.80 # 70080 # 71228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_22 - 209 AAA_25 PF13481.1 194 0.00015 14.4 0.1 1 1 9.3e-06 0.0004 13.1 0.0 42 87 10 44 3 90 0.78 # 16027 # 16653 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_29 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 1 2 0.045 5.8 -0.3 0.0 53 79 4 29 2 32 0.90 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 2 2 4.2e-05 0.0055 9.5 0.0 3 31 166 194 164 209 0.86 # 22921 # 23604 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/aa0e0598-9a3b-47f1-8362-4fe9fd757b58 # Target file: checkm_output/bins/pm1718/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1718/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/aa0e0598-9a3b-47f1-8362-4fe9fd757b58 checkm_output/bins/pm1718/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:51 2020 # [ok]