# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 188 Methyltransf_12 PF08242.7 99 1.1e-05 18.8 0.0 1 1 2e-07 1.9e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_24 - 228 UPF0020 PF01170.13 180 3.7e-06 19.5 0.0 1 2 8.1e-05 0.0078 8.6 0.0 102 123 16 37 2 89 0.68 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_24 - 228 UPF0020 PF01170.13 180 3.7e-06 19.5 0.0 2 2 6.3e-05 0.006 9.0 0.0 28 54 163 189 158 220 0.67 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_35 - 188 RrnaAD PF00398.15 262 3.3e-09 28.9 0.0 1 1 4.4e-11 4.2e-09 28.6 0.0 9 113 29 128 24 148 0.89 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_37 - 176 SSB PF00436.20 104 8.6e-41 130.9 0.3 1 1 1.1e-42 1.1e-40 130.6 0.3 1 101 6 109 6 112 0.95 # 29316 # 29843 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_35 - 188 Methyltransf_18 PF12847.2 112 2.8e-10 33.6 0.0 1 1 6.3e-12 6e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_88 - 1757 UvrD_C_2 PF13538.1 104 4.3e-08 26.1 1.0 1 2 0.013 1.3 2.1 0.0 6 44 1227 1265 1223 1294 0.75 # 75141 # 80411 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_88 - 1757 UvrD_C_2 PF13538.1 104 4.3e-08 26.1 1.0 2 2 1.4e-08 1.3e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 75141 # 80411 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_68 - 876 DUF87 PF01935.12 229 1.1e-07 24.7 0.0 1 1 6.5e-09 3.1e-07 23.2 0.0 26 222 482 669 468 676 0.77 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 104 DUF87 PF01935.12 229 0.00037 13.2 0.0 1 1 1.1e-05 0.00053 12.7 0.0 25 50 72 97 70 102 0.89 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_42 - 1588 NB-ARC PF00931.17 287 6.7e-06 17.9 0.4 1 1 3.5e-07 3.3e-05 15.6 0.4 9 50 216 254 209 349 0.71 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_42 - 1588 AAA_22 PF13401.1 131 9.4e-06 18.7 0.3 1 1 3.1e-06 7.5e-05 15.7 0.3 3 98 225 300 220 335 0.68 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_14 - 894 AAA_22 PF13401.1 131 6.7e-05 15.9 0.5 1 1 6.5e-05 0.0016 11.5 0.0 4 47 303 351 298 382 0.78 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_72 - 154 AAA_22 PF13401.1 131 0.00074 12.5 0.1 1 1 6.7e-05 0.0016 11.4 0.1 7 94 16 109 13 119 0.75 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_63 - 104 AAA_22 PF13401.1 131 0.00075 12.5 0.0 1 1 5.8e-05 0.0014 11.6 0.0 3 27 69 93 64 101 0.86 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_24 - 228 Methyltransf_11 PF08241.7 95 0.0006 13.2 0.0 1 2 0.0024 0.23 4.9 0.0 78 93 53 68 48 70 0.84 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_24 - 228 Methyltransf_11 PF08241.7 95 0.0006 13.2 0.0 2 2 0.0014 0.13 5.7 0.0 5 54 172 220 168 226 0.82 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_95 - 87 Rad60-SLD PF11976.3 72 0.0001 14.8 0.1 1 1 1.5e-06 0.00015 14.3 0.1 12 39 41 68 33 77 0.83 # 83969 # 84229 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_24 - 228 N6_N4_Mtase PF01555.13 231 7.1e-37 119.9 0.0 1 1 3.3e-36 3.1e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_87 - 733 AAA_17 PF13207.1 121 0.00031 14.4 0.0 1 1 1.2e-05 0.0011 12.6 0.0 3 27 189 217 187 262 0.68 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 894 AAA_21 PF13304.1 303 2.4e-07 23.8 0.1 1 2 0.00095 0.091 5.5 0.1 3 238 307 506 305 521 0.59 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 894 AAA_21 PF13304.1 303 2.4e-07 23.8 0.1 2 2 1.7e-06 0.00017 14.5 0.0 248 302 774 827 678 829 0.76 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_42 - 1588 Miro PF08477.8 119 0.00017 15.0 0.1 1 1 5.6e-06 0.00054 13.3 0.1 2 44 229 270 227 302 0.73 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_68 - 876 MobB PF03205.9 140 0.00025 13.6 0.2 1 2 2.7e-05 0.0026 10.3 0.0 4 37 483 515 481 523 0.79 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_68 - 876 MobB PF03205.9 140 0.00025 13.6 0.2 2 2 0.034 3.3 0.3 0.0 25 64 695 732 690 744 0.86 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 104 T2SE PF00437.15 272 0.00061 11.5 0.0 1 1 1.2e-05 0.0012 10.6 0.0 111 155 56 97 39 102 0.76 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_42 - 1588 Zeta_toxin PF06414.7 201 0.00054 11.9 0.0 1 1 2.8e-05 0.0013 10.6 0.0 14 56 224 267 215 305 0.84 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_63 - 104 Zeta_toxin PF06414.7 201 0.0012 10.8 0.0 1 1 3e-05 0.0014 10.5 0.0 14 40 68 94 58 103 0.80 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_14 - 894 SMC_N PF02463.14 220 1.7e-10 33.3 0.2 1 2 6.1e-06 0.00059 11.9 0.0 16 49 295 328 289 359 0.83 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 894 SMC_N PF02463.14 220 1.7e-10 33.3 0.2 2 2 3.7e-08 3.5e-06 19.2 0.1 135 213 735 838 370 845 0.73 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_42 - 1588 Arch_ATPase PF01637.13 234 4e-06 19.5 3.0 1 1 9.6e-08 4.6e-06 19.3 0.3 3 83 211 306 210 354 0.66 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 154 Arch_ATPase PF01637.13 234 9.2e-05 15.0 0.4 1 1 3.4e-06 0.00016 14.2 0.4 23 125 16 109 7 119 0.69 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_87 - 733 AAA_16 PF13191.1 185 4.4e-06 19.6 0.0 1 1 8e-07 1.9e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 894 AAA_16 PF13191.1 185 4.3e-05 16.4 0.5 1 1 4.9e-06 0.00012 15.0 0.4 24 51 303 330 294 526 0.88 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_42 - 1588 AAA_16 PF13191.1 185 0.00015 14.7 0.0 1 1 2.7e-05 0.00064 12.6 0.0 10 58 217 259 210 315 0.71 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_63 - 104 AAA_16 PF13191.1 185 0.00023 14.0 0.1 1 1 1.8e-05 0.00044 13.1 0.0 22 51 68 97 60 102 0.91 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_14 - 894 AAA_23 PF13476.1 202 8.1e-08 25.6 3.8 1 1 4.3e-09 4.1e-07 23.3 3.8 11 175 288 584 285 639 0.50 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_42 - 1588 AAA_18 PF13238.1 129 0.00015 14.9 0.1 1 1 2.7e-05 0.0013 11.9 0.1 1 106 229 353 229 368 0.76 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_14 - 894 AAA_18 PF13238.1 129 0.00027 14.1 0.6 1 2 0.00032 0.015 8.5 0.0 1 39 306 370 306 383 0.79 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 894 AAA_18 PF13238.1 129 0.00027 14.1 0.6 2 2 0.053 2.5 1.3 0.1 14 87 386 471 384 494 0.67 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 894 AAA_13 PF13166.1 712 0.012 6.8 10.8 1 2 0.0035 0.33 2.1 4.9 291 448 445 595 433 672 0.64 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 894 AAA_13 PF13166.1 712 0.012 6.8 10.8 2 2 7.5e-05 0.0072 7.6 0.3 540 572 795 825 786 834 0.84 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_35 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.4 0.0 1 1 1.7e-06 0.00016 14.9 0.0 1 101 54 142 54 142 0.81 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_72 - 154 AAA_14 PF13173.1 128 7.4e-06 18.8 0.1 1 1 1.9e-07 9.1e-06 18.5 0.1 5 87 16 97 13 135 0.69 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_42 - 1588 AAA_14 PF13173.1 128 0.00028 13.7 0.2 1 1 5.8e-06 0.00028 13.7 0.2 2 101 226 333 225 340 0.72 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 154 GvpD PF07088.6 484 0.00019 12.7 0.0 1 2 0.052 5 -1.9 0.0 11 26 14 29 9 44 0.75 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_72 - 154 GvpD PF07088.6 484 0.00019 12.7 0.0 2 2 4.8e-06 0.00046 11.4 0.0 138 181 92 134 82 143 0.86 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_14 - 894 AAA_29 PF13555.1 62 7.6e-06 18.3 0.0 1 1 4.2e-07 2e-05 16.9 0.0 14 45 296 325 286 335 0.76 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_72 - 154 AAA_29 PF13555.1 62 0.00082 11.8 0.0 1 1 3e-05 0.0014 11.0 0.0 17 40 8 30 1 35 0.79 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_42 - 1588 AAA PF00004.24 132 6.8e-05 15.9 0.0 1 1 2e-06 0.00019 14.5 0.0 1 94 229 318 229 343 0.70 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_42 - 1588 Sigma54_activat PF00158.21 168 9.2e-06 18.0 0.0 1 1 4.3e-07 2e-05 16.9 0.0 11 83 215 286 209 307 0.81 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 154 Sigma54_activat PF00158.21 168 0.00016 14.0 0.0 1 2 2.6e-05 0.0012 11.1 0.0 16 62 7 54 1 61 0.79 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_72 - 154 Sigma54_activat PF00158.21 168 0.00016 14.0 0.0 2 2 0.037 1.8 0.9 0.0 94 120 71 97 65 107 0.81 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_72 - 154 MMR_HSR1 PF01926.18 116 2.5e-05 17.1 0.0 1 1 3.2e-07 3e-05 16.8 0.0 2 90 16 111 15 140 0.69 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_35 - 188 N6_Mtase PF02384.11 311 0.00015 13.8 0.0 1 2 1.6e-05 0.0016 10.4 0.0 28 64 32 68 21 83 0.87 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_35 - 188 N6_Mtase PF02384.11 311 0.00015 13.8 0.0 2 2 0.018 1.7 0.4 0.0 127 137 114 124 103 134 0.82 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_42 - 1588 DUF258 PF03193.11 161 4.7e-05 15.5 0.0 1 1 2.5e-06 0.00012 14.1 0.0 14 62 204 253 191 264 0.81 # 35312 # 40075 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_14 - 894 DUF258 PF03193.11 161 0.00064 11.8 0.0 1 1 2.6e-05 0.0013 10.8 0.0 22 59 290 327 273 357 0.82 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_87 - 733 TraG-D_C PF12696.2 128 7.2e-21 67.3 0.0 1 1 1.4e-22 1.3e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_35 - 188 Methyltransf_26 PF13659.1 117 2.4e-14 46.2 0.0 1 1 9e-16 4.3e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_24 - 228 Methyltransf_26 PF13659.1 117 1.4e-13 43.8 0.1 1 2 6.9e-09 3.3e-07 23.2 0.0 53 114 3 71 2 74 0.78 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_24 - 228 Methyltransf_26 PF13659.1 117 1.4e-13 43.8 0.1 2 2 2e-07 9.8e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_88 - 1757 AAA_30 PF13604.1 196 1.8e-44 144.5 14.4 1 2 1.9e-05 0.0009 11.7 3.8 7 147 420 552 416 562 0.84 # 75141 # 80411 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_88 - 1757 AAA_30 PF13604.1 196 1.8e-44 144.5 14.4 2 2 9.1e-44 4.4e-42 136.7 1.9 1 186 968 1156 968 1162 0.93 # 75141 # 80411 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_87 - 733 AAA_30 PF13604.1 196 0.00055 12.4 0.0 1 1 2.6e-05 0.0012 11.2 0.0 21 57 188 224 180 230 0.85 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_63 - 104 FtsK_SpoIIIE PF01580.13 205 1.4e-06 20.8 0.0 1 1 3.5e-08 1.7e-06 20.5 0.0 9 66 39 98 32 101 0.80 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_68 - 876 FtsK_SpoIIIE PF01580.13 205 4e-06 19.3 0.2 1 2 4.1e-06 0.00019 13.7 0.0 39 63 476 504 463 507 0.84 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_68 - 876 FtsK_SpoIIIE PF01580.13 205 4e-06 19.3 0.2 2 2 0.0077 0.37 3.0 0.1 75 167 530 626 529 632 0.85 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 188 MTS PF05175.9 170 8.4e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_35 - 188 Methyltrans_SAM PF10672.4 286 0.00088 11.0 0.0 1 1 1.3e-05 0.0013 10.5 0.0 196 261 113 173 100 180 0.78 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_35 - 188 Met_10 PF02475.11 200 0.00049 12.5 0.0 1 1 7e-06 0.00068 12.1 0.0 99 189 48 132 38 145 0.78 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_14 - 894 ABC_tran PF00005.22 137 3e-05 17.2 2.2 1 1 2.2e-05 0.0021 11.2 3.5 12 94 304 415 294 607 0.81 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_24 - 228 Cons_hypoth95 PF03602.10 183 6.8e-06 18.4 0.0 1 2 0.00022 0.021 7.0 0.0 112 146 18 54 2 82 0.64 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_24 - 228 Cons_hypoth95 PF03602.10 183 6.8e-06 18.4 0.0 2 2 3.9e-05 0.0038 9.5 0.0 41 62 162 183 145 219 0.78 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_88 - 1757 AAA_19 PF13245.1 76 9.4e-08 24.6 1.4 1 1 4.5e-09 4.3e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 75141 # 80411 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_68 - 876 AAA_10 PF12846.2 304 3.7e-49 160.6 0.0 1 1 2e-50 6.4e-49 159.8 0.0 1 294 479 768 479 774 0.88 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_87 - 733 AAA_10 PF12846.2 304 1.3e-10 34.0 0.0 1 1 7.4e-11 2.4e-09 29.9 0.0 3 296 187 494 186 500 0.68 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_63 - 104 AAA_10 PF12846.2 304 1.4e-05 17.5 0.0 1 2 0.0061 0.2 3.9 0.0 273 290 23 40 8 52 0.80 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_63 - 104 AAA_10 PF12846.2 304 1.4e-05 17.5 0.0 2 2 2.2e-05 0.00069 11.9 0.0 2 24 71 93 70 98 0.87 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_35 - 188 Methyltransf_31 PF13847.1 152 6e-07 22.0 0.0 1 1 7.6e-09 7.3e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_87 - 733 TrwB_AAD_bind PF10412.4 386 2.5e-150 493.2 0.0 1 1 9.5e-152 3e-150 492.9 0.0 2 386 172 561 171 561 0.99 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_68 - 876 TrwB_AAD_bind PF10412.4 386 3.9e-07 21.8 0.1 1 2 7.2e-08 2.3e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_68 - 876 TrwB_AAD_bind PF10412.4 386 3.9e-07 21.8 0.1 2 2 0.061 2 -0.3 0.0 261 317 713 769 684 772 0.92 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 104 TrwB_AAD_bind PF10412.4 386 9.8e-05 13.9 0.0 1 2 0.037 1.2 0.5 0.0 294 335 22 63 15 68 0.79 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_63 - 104 TrwB_AAD_bind PF10412.4 386 9.8e-05 13.9 0.0 2 2 8.4e-06 0.00027 12.4 0.0 5 43 60 98 56 102 0.86 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_88 - 1757 AAA_11 PF13086.1 236 0.00026 13.4 0.0 1 1 2.7e-06 0.00026 13.4 0.0 2 75 969 1039 968 1060 0.80 # 75141 # 80411 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_72 - 154 Sigma54_activ_2 PF14532.1 138 0.00012 15.0 0.0 1 1 2e-06 0.00019 14.3 0.0 55 109 54 110 3 122 0.68 # 60915 # 61376 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_87 - 733 T4SS-DNA_transf PF02534.9 469 4.4e-10 31.5 0.0 1 1 2e-11 9.8e-10 30.3 0.0 250 361 362 476 198 500 0.76 # 72943 # 75141 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_68 - 876 T4SS-DNA_transf PF02534.9 469 0.0002 12.8 0.0 1 2 0.0031 0.15 3.3 0.0 105 184 533 606 470 625 0.82 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_68 - 876 T4SS-DNA_transf PF02534.9 469 0.0002 12.8 0.0 2 2 0.00021 0.01 7.2 0.0 319 378 711 769 662 771 0.90 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 188 TIGR00755 TIGR00755 256 2.4e-09 29.3 0.0 1 1 3.4e-11 3.3e-09 28.9 0.0 8 105 29 123 25 134 0.90 # 27845 # 28408 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_24 - 228 MethyltransfD12 PF02086.10 260 0.00056 12.2 0.0 1 2 0.023 2.3 0.4 0.0 178 188 21 31 13 86 0.85 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_24 - 228 MethyltransfD12 PF02086.10 260 0.00056 12.2 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_63 - 104 Pox_A32 PF04665.7 241 0.00016 13.8 0.0 1 2 0.034 1.7 0.7 0.0 2 28 39 64 38 69 0.76 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_63 - 104 Pox_A32 PF04665.7 241 0.00016 13.8 0.0 2 2 1.4e-05 0.00069 11.8 0.0 8 42 65 99 58 101 0.90 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_68 - 876 Pox_A32 PF04665.7 241 0.00082 11.5 0.0 1 1 4.6e-05 0.0022 10.1 0.0 7 38 473 504 469 519 0.85 # 56261 # 58888 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 104 RNA_helicase PF00910.17 107 0.00019 14.5 0.0 1 1 4.1e-06 0.00039 13.5 0.0 1 29 73 101 73 103 0.91 # 54675 # 54986 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_14 - 894 AAA_25 PF13481.1 194 0.00054 12.2 0.0 1 1 1.2e-05 0.0012 11.1 0.0 34 95 304 364 282 482 0.83 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_24 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.4 0.0 1 2 0.012 1.2 1.5 0.0 53 80 4 30 2 34 0.91 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_24 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.4 0.0 2 2 4.3e-05 0.0042 9.5 0.0 3 31 166 194 164 208 0.86 # 21453 # 22136 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_14 - 894 AAA_28 PF13521.1 163 1.9e-05 17.5 0.0 1 1 1e-06 0.0001 15.2 0.0 2 29 306 335 305 376 0.76 # 10390 # 13071 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e3acce0b-43bd-4b58-9ce2-2c171cfa6c07 # Target file: checkm_output/bins/pm1716/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1716/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e3acce0b-43bd-4b58-9ce2-2c171cfa6c07 checkm_output/bins/pm1716/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:52 2020 # [ok]