# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 332 cobW PF02492.14 178 1.6e-06 20.1 0.0 1 1 1.2e-07 2.9e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_15 - 207 cobW PF02492.14 178 0.00018 13.4 0.2 1 2 5.5e-05 0.0013 10.6 0.0 10 38 12 41 3 47 0.86 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_15 - 207 cobW PF02492.14 178 0.00018 13.4 0.2 2 2 0.058 1.4 0.7 0.1 114 146 115 147 71 170 0.78 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_4 - 181 cobW PF02492.14 178 0.0006 11.7 0.0 1 1 3.9e-05 0.00093 11.1 0.0 2 22 2 22 1 30 0.79 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 Parvo_NS1 PF01057.12 272 0.00061 11.1 0.0 1 1 1.4e-05 0.001 10.4 0.0 104 138 148 182 140 188 0.90 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 IstB_IS21 PF01695.12 178 2e-05 16.5 0.0 1 1 4.5e-07 3.2e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_15 - 207 MipZ PF09140.6 261 1.2e-14 46.3 0.8 1 2 2.5e-11 8.8e-10 30.4 0.0 2 47 3 47 2 61 0.88 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_15 - 207 MipZ PF09140.6 261 1.2e-14 46.3 0.8 2 2 1.7e-06 6.1e-05 14.6 0.3 96 141 73 118 54 144 0.86 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_12 - 355 MipZ PF09140.6 261 1.1e-09 30.1 0.0 1 2 2.4e-08 8.5e-07 20.7 0.0 3 39 4 40 2 49 0.91 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_12 - 355 MipZ PF09140.6 261 1.1e-09 30.1 0.0 2 2 0.00028 0.01 7.3 0.0 96 128 148 180 137 198 0.82 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_12 - 355 YhjQ PF06564.7 244 2.1e-12 39.3 0.0 1 2 3.3e-09 2.3e-07 22.8 0.0 1 45 1 45 1 51 0.91 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_12 - 355 YhjQ PF06564.7 244 2.1e-12 39.3 0.0 2 2 1.2e-06 8.6e-05 14.4 0.0 103 151 137 184 127 199 0.87 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_13 - 332 AAA_2 PF07724.9 171 4.1e-06 19.2 0.0 1 1 1e-07 7.3e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 DUF87 PF01935.12 229 1.9e-06 20.3 0.0 1 1 4.8e-08 3.4e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_22 PF13401.1 131 1.9e-07 23.7 0.0 1 1 1.8e-08 4.3e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 AAA_22 PF13401.1 131 1.2e-05 17.9 0.0 1 1 9.9e-07 2.3e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_20 - 867 AAA_22 PF13401.1 131 7.6e-05 15.3 0.0 1 1 7.5e-05 0.0018 10.9 0.0 5 28 492 515 489 549 0.85 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_15 - 207 DUF1611 PF07755.6 301 2.4e-06 18.8 0.2 1 1 5.2e-08 3.7e-06 18.1 0.2 124 200 13 90 11 107 0.86 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_15 - 207 ATP_bind_1 PF03029.12 238 3.3e-05 15.9 0.0 1 1 1.7e-06 5.9e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_12 - 355 ATP_bind_1 PF03029.12 238 0.00035 12.6 0.0 1 2 6.2e-05 0.0022 9.9 0.0 6 36 12 42 10 46 0.94 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_12 - 355 ATP_bind_1 PF03029.12 238 0.00035 12.6 0.0 2 2 0.078 2.8 -0.2 0.0 83 99 143 159 126 160 0.79 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_32 - 478 DNA_methylase PF00145.12 335 1.5e-79 259.9 0.0 1 1 4.4e-81 3.2e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 23349 # 24782 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 2_15 - 207 SRP54 PF00448.17 196 7.4e-05 14.7 0.4 1 1 3.9e-06 0.00027 12.8 0.3 11 53 12 49 2 132 0.72 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_4 - 181 AAA_17 PF13207.1 121 4.3e-07 23.2 0.1 1 1 4.6e-08 8.2e-07 22.3 0.1 1 77 2 94 2 173 0.54 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 207 AAA_17 PF13207.1 121 5.9e-05 16.3 0.0 1 1 4.3e-06 7.6e-05 16.0 0.0 9 80 12 86 11 180 0.71 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 AAA_17 PF13207.1 121 0.00028 14.1 0.1 1 1 3.8e-05 0.00067 12.9 0.1 2 40 161 195 160 229 0.75 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 AAA_17 PF13207.1 121 0.00066 12.9 4.9 1 1 0.0003 0.0053 10.0 0.0 3 21 495 513 494 565 0.80 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_15 - 207 MobB PF03205.9 140 1.9e-06 20.1 0.4 1 1 2.7e-07 9.6e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 MobB PF03205.9 140 6.3e-06 18.4 1.9 1 1 3e-07 1.1e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_15 - 207 LpxK PF02606.9 326 3.7e-05 15.1 0.1 1 1 8.4e-07 5.9e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_12 - 355 ArsA_ATPase PF02374.10 305 2.9e-11 35.3 0.1 1 2 7.7e-12 2.7e-10 32.1 0.1 5 46 6 47 1 68 0.89 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_12 - 355 ArsA_ATPase PF02374.10 305 2.9e-11 35.3 0.1 2 2 0.026 0.94 0.8 0.0 122 141 146 165 138 167 0.83 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_15 - 207 ArsA_ATPase PF02374.10 305 2.1e-08 25.9 0.2 1 1 9.7e-10 3.4e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 PhoH PF02562.11 205 0.00022 12.9 0.0 1 1 5.6e-06 0.0004 12.1 0.0 14 45 153 184 143 210 0.79 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_7 PF12775.2 272 7e-05 14.4 0.0 1 1 2.3e-06 0.00017 13.2 0.0 25 64 150 189 139 209 0.86 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 T2SE PF00437.15 272 2.2e-52 170.0 0.1 1 1 3.7e-54 2.6e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 Cytidylate_kin2 PF13189.1 179 0.00033 13.0 0.0 1 2 6.6e-05 0.0047 9.3 0.0 1 23 2 24 2 46 0.78 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_4 - 181 Cytidylate_kin2 PF13189.1 179 0.00033 13.0 0.0 2 2 0.015 1.1 1.6 0.0 112 135 99 122 91 136 0.77 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 Zeta_toxin PF06414.7 201 1.1e-06 20.3 0.0 1 1 5.4e-08 1.9e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 Zeta_toxin PF06414.7 201 3.2e-05 15.5 0.0 1 2 9.4e-06 0.00033 12.2 0.0 19 53 3 35 1 120 0.83 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_4 - 181 Zeta_toxin PF06414.7 201 3.2e-05 15.5 0.0 2 2 0.048 1.7 0.1 0.0 45 74 106 133 95 150 0.73 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 207 VirC1 PF07015.6 231 5.7e-15 47.4 0.2 1 1 3.2e-16 1.1e-14 46.4 0.2 1 131 1 123 1 174 0.80 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_12 - 355 VirC1 PF07015.6 231 9.2e-05 14.0 0.1 1 1 7.8e-06 0.00028 12.4 0.0 1 40 1 40 1 46 0.89 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_15 - 207 Fer4_NifH PF00142.13 273 1.1e-06 20.4 0.0 1 1 5.5e-08 2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_12 - 355 Fer4_NifH PF00142.13 273 2.1e-06 19.4 0.0 1 1 9.5e-08 3.4e-06 18.8 0.0 7 47 9 49 2 66 0.84 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_13 - 332 Arch_ATPase PF01637.13 234 6.2e-06 18.4 0.0 1 1 1.6e-07 1.1e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_16 PF13191.1 185 4.8e-07 22.3 0.0 1 1 3.4e-08 1.2e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 AAA_16 PF13191.1 185 0.00069 12.0 0.0 1 1 0.00018 0.0064 8.9 0.0 25 47 492 514 481 574 0.85 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 332 AAA_23 PF13476.1 202 0.00032 13.5 0.0 1 1 1.4e-05 0.00051 12.8 0.0 19 39 158 178 105 184 0.91 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 AAA_23 PF13476.1 202 0.0034 10.1 0.0 1 1 9.5e-05 0.0034 10.1 0.0 22 39 494 511 464 521 0.84 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 4_4 - 181 AAA_18 PF13238.1 129 4.8e-11 35.5 0.0 1 1 2.4e-12 8.5e-11 34.7 0.0 1 126 3 134 3 137 0.71 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 AAA_18 PF13238.1 129 3.3e-06 19.9 0.0 1 1 2e-07 6.9e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_12 - 355 CbiA PF01656.18 195 4.4e-31 100.2 0.0 1 1 2e-32 6.9e-31 99.5 0.0 1 172 4 249 4 279 0.85 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_15 - 207 CbiA PF01656.18 195 6.6e-29 93.1 1.5 1 1 4.8e-30 1.7e-28 91.8 1.5 1 142 4 123 4 162 0.77 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 KaiC PF06745.8 227 0.00012 13.6 0.0 1 1 3e-06 0.00022 12.8 0.0 16 53 155 190 148 240 0.77 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_14 PF13173.1 128 0.00019 13.7 0.1 1 2 0.0044 0.16 4.3 0.0 64 96 135 165 98 166 0.69 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_14 PF13173.1 128 0.00019 13.7 0.1 2 2 6.3e-05 0.0023 10.3 0.0 2 35 158 191 157 213 0.80 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 AAA_14 PF13173.1 128 0.00042 12.7 0.0 1 1 2.3e-05 0.00081 11.7 0.0 4 27 2 25 1 54 0.79 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 GvpD PF07088.6 484 1.8e-06 18.9 0.0 1 1 3.9e-08 2.7e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_29 PF13555.1 62 0.00071 11.6 0.0 1 1 2.3e-05 0.0017 10.4 0.0 19 43 157 178 145 188 0.75 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 Sigma54_activat PF00158.21 168 6.1e-06 18.2 0.0 1 1 1.6e-07 1.1e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 MMR_HSR1 PF01926.18 116 0.00031 13.2 0.0 1 1 7.1e-06 0.0005 12.5 0.0 2 41 161 205 160 310 0.84 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 DUF258 PF03193.11 161 7.9e-05 14.3 0.0 1 1 2e-06 0.00014 13.5 0.0 29 61 151 184 129 224 0.81 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_12 - 355 AAA_31 PF13614.1 157 9.1e-15 47.3 0.0 1 2 2.2e-11 7.6e-10 31.3 0.0 1 64 2 62 2 91 0.83 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_12 - 355 AAA_31 PF13614.1 157 9.1e-15 47.3 0.0 2 2 5.2e-06 0.00019 13.8 0.1 112 154 144 186 112 187 0.91 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_15 - 207 AAA_31 PF13614.1 157 1.2e-08 27.4 0.2 1 2 2e-08 7.1e-07 21.7 0.0 1 39 2 40 2 53 0.94 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_15 - 207 AAA_31 PF13614.1 157 1.2e-08 27.4 0.2 2 2 0.0095 0.34 3.2 0.0 115 152 74 109 59 114 0.83 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_15 - 207 NTPase_1 PF03266.10 168 0.00022 13.4 0.1 1 2 1.1e-05 0.00081 11.5 0.0 7 58 10 66 5 94 0.80 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_15 - 207 NTPase_1 PF03266.10 168 0.00022 13.4 0.1 2 2 0.084 6 -1.0 0.1 76 99 149 172 119 176 0.66 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_4 - 181 AAA_33 PF13671.1 143 4.1e-11 35.4 0.0 1 1 1.5e-12 5.2e-11 35.0 0.0 2 127 3 130 2 151 0.75 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 AAA_33 PF13671.1 143 0.00026 13.3 0.0 1 1 1.2e-05 0.00042 12.6 0.0 2 26 161 188 160 256 0.81 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_30 PF13604.1 196 0.00011 14.3 0.1 1 2 4.7e-05 0.0017 10.4 0.1 11 51 151 190 145 197 0.80 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 AAA_30 PF13604.1 196 0.00011 14.3 0.1 2 2 0.024 0.84 1.6 0.0 121 178 204 258 191 272 0.77 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_15 - 207 AAA_30 PF13604.1 196 0.00022 13.3 0.6 1 1 1.5e-05 0.00053 12.0 0.1 26 106 10 88 2 97 0.75 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 FtsK_SpoIIIE PF01580.13 205 6.1e-07 21.5 0.0 1 1 3.4e-08 1.2e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 FtsK_SpoIIIE PF01580.13 205 8.3e-06 17.8 0.0 1 1 5.4e-07 1.9e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 332 ABC_tran PF00005.22 137 1.1e-06 21.4 0.0 1 1 5e-08 1.8e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 ABC_tran PF00005.22 137 0.00048 12.9 0.0 1 1 4.6e-05 0.0016 11.2 0.0 14 38 494 518 481 550 0.83 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 4_4 - 181 TIGR03263 TIGR03263 180 0.00051 11.8 0.0 1 1 1.6e-05 0.0011 10.7 0.0 3 26 2 25 1 31 0.81 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 ATP-synt_ab PF00006.20 215 0.00039 12.4 0.0 1 1 8.8e-06 0.00062 11.7 0.0 16 62 159 205 151 247 0.86 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 AAA_19 PF13245.1 76 0.00017 13.8 0.0 1 1 1.6e-05 0.00058 12.1 0.0 15 33 5 22 2 38 0.84 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 AAA_19 PF13245.1 76 0.00045 12.4 0.1 1 1 2.8e-05 0.00099 11.3 0.1 5 48 153 191 149 224 0.78 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 AAA_10 PF12846.2 304 1.7e-35 115.3 0.1 1 1 2.4e-36 5.7e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_15 - 207 AAA_10 PF12846.2 304 9.2e-06 17.6 0.0 1 1 7e-07 1.7e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 AAA_10 PF12846.2 304 0.00019 13.3 0.0 1 1 1.2e-05 0.00029 12.7 0.0 3 29 160 185 158 233 0.81 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 ResIII PF04851.10 184 4.4e-06 19.0 0.0 1 1 9.8e-08 6.9e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 DUF2075 PF09848.4 352 6.5e-05 14.4 0.0 1 1 1.3e-06 9.2e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 DEAD PF00270.24 169 2.1e-06 19.7 0.0 1 1 5.7e-08 4e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 867 TrwB_AAD_bind PF10412.4 386 6.5e-07 20.6 1.6 1 2 9.8e-07 3.5e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_20 - 867 TrwB_AAD_bind PF10412.4 386 6.5e-07 20.6 1.6 2 2 0.0028 0.1 3.5 0.0 102 168 741 806 720 812 0.79 # 16339 # 18939 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 332 TrwB_AAD_bind PF10412.4 386 9.7e-06 16.8 0.1 1 1 4.2e-07 1.5e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 Sigma54_activ_2 PF14532.1 138 1.7e-06 20.6 0.0 1 1 5e-08 3.6e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_15 - 207 ArgK PF03308.11 267 7.6e-05 14.0 0.0 1 1 5.1e-06 0.00018 12.7 0.0 39 72 12 45 5 53 0.90 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_12 - 355 ArgK PF03308.11 267 0.00059 11.0 0.0 1 1 3.7e-05 0.0013 9.9 0.0 38 72 11 45 7 62 0.88 # 9575 # 10639 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_13 - 332 Pox_A32 PF04665.7 241 7.1e-05 14.6 0.0 1 1 1.7e-06 0.00012 13.8 0.0 12 46 157 191 150 210 0.85 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 GTP_EFTU PF00009.22 188 0.00016 13.6 0.2 1 1 3.5e-06 0.00025 12.9 0.2 2 32 157 187 156 205 0.83 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 RNA_helicase PF00910.17 107 1.4e-05 17.7 0.1 1 2 7e-06 0.00025 13.7 0.0 1 25 161 185 161 242 0.75 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 332 RNA_helicase PF00910.17 107 1.4e-05 17.7 0.1 2 2 0.054 1.9 1.2 0.1 69 100 290 322 281 328 0.78 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 RNA_helicase PF00910.17 107 0.00041 13.0 0.0 1 1 1.8e-05 0.00065 12.3 0.0 1 26 3 28 3 47 0.84 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 UPF0079 PF02367.12 123 4.3e-06 18.8 0.0 1 1 2.5e-07 8.7e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 UPF0079 PF02367.12 123 0.00014 13.9 0.0 1 1 6.6e-06 0.00023 13.2 0.0 17 36 2 21 1 30 0.88 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_4 - 181 AAA_24 PF13479.1 213 5.1e-05 15.3 0.0 1 1 2.8e-06 9.9e-05 14.4 0.0 6 33 3 34 1 73 0.90 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 207 AAA_24 PF13479.1 213 0.00045 12.2 0.7 1 1 3.3e-05 0.0012 10.9 0.1 12 88 11 95 3 99 0.81 # 11345 # 11965 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 332 Myosin_head PF00063.16 689 0.00011 12.7 0.0 1 1 2.2e-06 0.00016 12.2 0.0 84 110 157 183 147 209 0.90 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 NACHT PF05729.7 166 1.1e-05 17.6 0.0 1 2 1.5e-06 5.4e-05 15.3 0.0 2 22 2 22 1 37 0.89 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_4 - 181 NACHT PF05729.7 166 1.1e-05 17.6 0.0 2 2 0.091 3.2 -0.2 0.0 77 91 151 177 95 179 0.61 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 332 NACHT PF05729.7 166 6.3e-05 15.1 0.0 1 1 3.8e-06 0.00014 14.0 0.0 1 27 159 185 159 188 0.90 # 10308 # 11303 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 181 AAA_28 PF13521.1 163 9.7e-05 14.8 0.0 1 1 2.9e-06 0.00021 13.7 0.0 2 30 3 34 2 165 0.89 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_4 - 181 APS_kinase PF01583.15 157 9.9e-06 17.7 0.0 1 2 7.3e-06 0.00052 12.1 0.0 4 24 2 22 1 35 0.87 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_4 - 181 APS_kinase PF01583.15 157 9.9e-06 17.7 0.0 2 2 0.0032 0.23 3.5 0.1 34 73 107 148 95 160 0.86 # 2203 # 2745 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a4b365aa-fa8b-42c9-ac23-58895314fc0f # Target file: checkm_output/bins/pm1710/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1710/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a4b365aa-fa8b-42c9-ac23-58895314fc0f checkm_output/bins/pm1710/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:46 2020 # [ok]