# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_33 - 228 UPF0020 PF01170.13 180 1.6e-05 17.8 0.0 1 2 0.00028 0.036 6.9 0.0 103 121 17 35 4 89 0.71 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_33 - 228 UPF0020 PF01170.13 180 1.6e-05 17.8 0.0 2 2 6.2e-05 0.0079 9.0 0.0 28 54 163 189 158 221 0.67 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_24 - 215 MipZ PF09140.6 261 3.1e-08 26.2 2.3 1 2 0.0008 0.1 4.8 0.5 7 25 8 26 2 38 0.71 # 18130 # 18774 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_24 - 215 MipZ PF09140.6 261 3.1e-08 26.2 2.3 2 2 9e-09 1.2e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 18130 # 18774 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_42 - 176 SSB PF00436.20 104 7.8e-41 131.5 0.3 1 1 7.9e-43 1e-40 131.1 0.3 1 101 6 109 6 112 0.96 # 31419 # 31946 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_84 - 241 DUF87 PF01935.12 229 0.00043 13.4 0.0 1 1 6.1e-06 0.00079 12.5 0.0 28 56 20 49 19 50 0.88 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_84 - 241 AAA_22 PF13401.1 131 6.9e-06 19.5 0.0 1 1 2.3e-07 1.5e-05 18.4 0.0 4 47 15 55 10 92 0.76 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 AAA_22 PF13401.1 131 0.00034 14.0 0.0 1 1 1.3e-05 0.00082 12.8 0.0 6 28 227 249 222 330 0.77 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 ATP_bind_1 PF03029.12 238 3.3e-05 16.8 0.0 1 1 3.9e-07 5.1e-05 16.1 0.0 1 23 20 42 20 55 0.86 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_33 - 228 N6_N4_Mtase PF01555.13 231 6.6e-36 117.2 0.0 1 1 1.8e-35 2.3e-33 108.8 0.0 1 228 21 200 21 203 0.91 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_84 - 241 AAA_17 PF13207.1 121 6.6e-06 20.2 0.1 1 2 2.1e-06 0.00014 16.0 0.0 3 49 19 68 19 111 0.75 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_84 - 241 AAA_17 PF13207.1 121 6.6e-06 20.2 0.1 2 2 0.036 2.3 2.3 0.1 58 113 185 221 131 233 0.59 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 AAA_17 PF13207.1 121 2.8e-05 18.2 0.2 1 1 2.1e-06 0.00013 16.0 0.0 1 24 227 255 227 345 0.72 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 AAA_21 PF13304.1 303 0.0013 11.9 0.0 1 1 1.8e-05 0.0024 11.1 0.0 4 22 20 38 17 68 0.74 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_84 - 241 MobB PF03205.9 140 0.00012 15.1 0.0 1 1 1.7e-06 0.00022 14.2 0.0 5 26 20 41 18 52 0.90 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 T2SE PF00437.15 272 3.1e-41 134.3 0.1 1 1 9.6e-43 6.2e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 T2SE PF00437.15 272 4.1e-36 117.5 0.0 1 1 9.4e-38 6.1e-36 116.9 0.0 120 269 7 164 4 167 0.87 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 G-alpha PF00503.15 389 0.00081 11.3 0.0 1 2 0.054 7 -1.6 0.0 234 272 70 113 29 117 0.79 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_97 - 518 G-alpha PF00503.15 389 0.00081 11.3 0.0 2 2 1.9e-05 0.0024 9.8 0.0 58 87 225 254 214 325 0.84 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 215 VirC1 PF07015.6 231 0.00052 12.4 0.0 1 2 0.00073 0.094 5.0 0.0 3 29 3 29 1 36 0.81 # 18130 # 18774 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_24 - 215 VirC1 PF07015.6 231 0.00052 12.4 0.0 2 2 0.00052 0.067 5.5 0.0 87 190 77 181 59 194 0.70 # 18130 # 18774 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_97 - 518 AAA_16 PF13191.1 185 0.00012 15.4 0.0 1 1 6.4e-06 0.00041 13.6 0.0 8 51 213 252 212 301 0.78 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 AAA_16 PF13191.1 185 0.00017 14.8 0.0 1 1 5.3e-06 0.00034 13.9 0.0 27 52 18 46 6 141 0.80 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_84 - 241 AAA_23 PF13476.1 202 0.00015 15.4 0.0 1 1 3.8e-06 0.00024 14.7 0.0 19 40 15 36 2 80 0.84 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 AAA_23 PF13476.1 202 0.00016 15.3 0.2 1 1 9.7e-06 0.00063 13.4 0.0 20 38 226 244 208 249 0.84 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 AAA_18 PF13238.1 129 8.9e-06 19.3 0.0 1 1 2.8e-07 1.8e-05 18.3 0.0 2 42 19 55 19 93 0.83 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 AAA_18 PF13238.1 129 0.00042 13.9 0.0 1 1 2.1e-05 0.0014 12.2 0.0 1 18 228 245 228 316 0.86 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 215 CbiA PF01656.18 195 1.6e-09 30.7 0.1 1 1 1.8e-11 2.3e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 18130 # 18774 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_97 - 518 AAA_14 PF13173.1 128 0.001 12.3 0.0 1 1 3.7e-05 0.0048 10.1 0.0 5 30 228 254 225 286 0.80 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_97 - 518 AAA_29 PF13555.1 62 3.6e-05 16.5 0.0 1 1 1.1e-06 7.4e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 AAA_29 PF13555.1 62 4e-05 16.4 0.0 1 1 1.2e-06 7.9e-05 15.5 0.0 26 44 18 36 9 45 0.84 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 AAA PF00004.24 132 0.00032 14.2 0.1 1 3 0.064 8.3 -0.1 0.0 38 57 81 100 52 110 0.81 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_97 - 518 AAA PF00004.24 132 0.00032 14.2 0.1 2 3 0.00033 0.042 7.3 0.0 1 21 228 248 228 278 0.83 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_97 - 518 AAA PF00004.24 132 0.00032 14.2 0.1 3 3 0.017 2.2 1.8 0.0 9 66 442 508 436 515 0.64 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_59 - 764 TraG-D_C PF12696.2 128 6.7e-07 22.5 0.2 1 1 1.2e-08 1.5e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 45210 # 47501 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_33 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 37.8 0.1 1 2 2.6e-07 3.3e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_33 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 37.8 0.1 2 2 9.7e-08 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_97 - 518 AAA_30 PF13604.1 196 0.00041 13.2 0.0 1 1 5.8e-06 0.00075 12.4 0.0 4 44 211 251 209 276 0.84 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 194 DNA_pol3_delta PF06144.8 172 2.7e-06 20.3 0.0 1 1 3e-08 3.8e-06 19.8 0.0 35 99 91 151 73 178 0.80 # 74178 # 74759 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_84 - 241 ABC_tran PF00005.22 137 8.1e-05 16.2 0.0 1 1 2.1e-06 0.00014 15.5 0.0 16 35 20 39 11 79 0.87 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 ABC_tran PF00005.22 137 9.7e-05 16.0 0.0 1 1 5.3e-06 0.00035 14.2 0.0 12 37 226 251 217 288 0.81 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_33 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 18.2 0.0 1 2 0.00027 0.034 6.8 0.0 112 168 18 76 9 83 0.68 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_33 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 18.2 0.0 2 2 3.9e-05 0.005 9.5 0.0 41 62 162 183 142 218 0.78 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_97 - 518 DAP3 PF10236.4 309 0.0008 11.6 0.0 1 1 1.2e-05 0.0015 10.7 0.0 21 42 223 244 215 253 0.86 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_97 - 518 AAA_19 PF13245.1 76 0.00012 15.1 0.0 1 1 2.6e-06 0.00034 13.7 0.0 10 46 226 259 218 268 0.79 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_71 - 1015 AAA_10 PF12846.2 304 1.5e-30 99.9 0.0 1 1 1e-31 3.4e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 57460 # 60504 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_59 - 764 AAA_10 PF12846.2 304 3.3e-05 16.6 1.0 1 1 3.1e-06 0.0001 15.1 1.0 2 287 137 501 136 514 0.62 # 45210 # 47501 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_97 - 518 AAA_10 PF12846.2 304 0.00029 13.6 0.0 1 1 1.7e-05 0.00054 12.7 0.0 4 30 228 256 226 320 0.81 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_84 - 241 AAA_10 PF12846.2 304 0.00034 13.4 0.0 1 1 2.2e-05 0.00069 12.3 0.0 2 22 16 36 15 55 0.82 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_55 - 283 Methyltransf_27 PF13708.1 194 9.2e-67 217.6 0.0 1 1 9.6e-69 1.2e-66 217.2 0.0 2 194 85 278 84 278 0.96 # 40629 # 41477 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_59 - 764 TrwB_AAD_bind PF10412.4 386 2.9e-06 19.3 0.2 1 2 9.3e-05 0.012 7.4 0.0 11 32 132 153 126 157 0.84 # 45210 # 47501 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_59 - 764 TrwB_AAD_bind PF10412.4 386 2.9e-06 19.3 0.2 2 2 3e-05 0.0039 9.0 0.1 247 332 440 525 427 555 0.88 # 45210 # 47501 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_33 - 228 MethyltransfD12 PF02086.10 260 0.00053 12.7 0.0 1 2 0.014 1.9 1.1 0.0 175 188 18 31 8 91 0.80 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_33 - 228 MethyltransfD12 PF02086.10 260 0.00053 12.7 0.0 2 2 4e-05 0.0052 9.5 0.0 20 46 163 189 148 197 0.78 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_84 - 241 RNA_helicase PF00910.17 107 6.9e-05 16.3 0.0 1 1 9.6e-07 0.00012 15.5 0.0 2 28 19 45 18 64 0.83 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_84 - 241 AAA_25 PF13481.1 194 0.0002 14.1 0.0 1 1 6e-06 0.00039 13.1 0.0 25 58 7 40 4 73 0.81 # 71366 # 72088 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 518 AAA_25 PF13481.1 194 0.00036 13.2 0.1 1 2 8.7e-05 0.0056 9.3 0.0 25 65 217 260 200 270 0.72 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_97 - 518 AAA_25 PF13481.1 194 0.00036 13.2 0.1 2 2 0.039 2.5 0.7 0.0 153 190 297 337 292 340 0.74 # 83180 # 84733 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_33 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 1 2 0.045 5.8 -0.3 0.0 53 79 4 29 2 32 0.90 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_33 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 2 2 4.2e-05 0.0055 9.5 0.0 3 31 166 194 164 209 0.86 # 24634 # 25317 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f0cfca67-de95-4833-8ce2-dab0ebd48e92 # Target file: checkm_output/bins/pm171/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm171/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f0cfca67-de95-4833-8ce2-dab0ebd48e92 checkm_output/bins/pm171/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:44 2020 # [ok]