# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 262 Mg_chelatase PF01078.16 207 0.00053 12.1 0.0 1 1 1.1e-05 0.0011 11.1 0.0 23 43 100 120 96 153 0.86 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_7 - 228 UPF0020 PF01170.13 180 1.3e-05 17.8 0.0 1 2 0.00028 0.029 6.9 0.0 103 121 17 35 4 89 0.71 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 2_7 - 228 UPF0020 PF01170.13 180 1.3e-05 17.8 0.0 2 2 6.2e-05 0.0065 9.0 0.0 28 54 163 189 158 221 0.67 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_12 - 262 IstB_IS21 PF01695.12 178 3.2e-69 224.8 0.1 1 1 4.1e-71 4.3e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_14 - 211 MipZ PF09140.6 261 6.4e-09 28.2 0.2 1 3 7.2e-07 7.5e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 2_14 - 211 MipZ PF09140.6 261 6.4e-09 28.2 0.2 2 3 1.2e-05 0.0013 10.8 0.0 88 135 69 116 58 151 0.82 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 2_14 - 211 MipZ PF09140.6 261 6.4e-09 28.2 0.2 3 3 0.066 6.9 -1.4 0.0 206 237 161 193 137 202 0.76 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_19 - 565 3HCDH_N PF02737.13 180 0.0033 10.0 6.4 1 2 0.0047 0.5 2.9 2.4 1 30 99 128 99 134 0.93 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 3HCDH_N PF02737.13 180 0.0033 10.0 6.4 2 2 9e-05 0.0095 8.6 0.1 2 39 272 309 271 348 0.73 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 GIDA PF01134.17 392 2.7e-08 26.0 6.6 1 3 3.5e-10 3.6e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 GIDA PF01134.17 392 2.7e-08 26.0 6.6 2 3 0.038 4 -0.9 0.0 3 31 273 301 271 315 0.84 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 GIDA PF01134.17 392 2.7e-08 26.0 6.6 3 3 0.018 1.9 0.1 0.1 349 385 393 429 387 433 0.77 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 Pyr_redox_2 PF07992.9 201 8.3e-44 142.8 0.0 1 1 3.2e-45 3.4e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_14 - 287 AAA_22 PF13401.1 131 4e-17 55.6 0.0 1 1 2e-18 7e-17 54.8 0.0 7 126 64 190 59 194 0.94 # 11652 # 12512 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_12 - 262 AAA_22 PF13401.1 131 2.9e-06 20.5 0.1 1 2 8.3e-06 0.00029 14.0 0.2 2 28 97 123 96 159 0.74 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 AAA_22 PF13401.1 131 2.9e-06 20.5 0.1 2 2 0.0062 0.22 4.7 0.0 87 117 151 196 132 204 0.62 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 AAA_22 PF13401.1 131 0.00028 14.0 0.0 1 1 1.9e-05 0.00067 12.8 0.0 6 28 227 249 222 330 0.77 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 565 DFP PF04127.10 185 0.00082 12.0 2.4 1 2 0.00039 0.041 6.4 0.4 28 51 105 128 99 156 0.83 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 DFP PF04127.10 185 0.00082 12.0 2.4 2 2 0.0014 0.14 4.7 0.1 32 53 281 302 276 336 0.77 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_12 - 262 AAA_3 PF07726.6 131 0.00054 12.6 0.0 1 1 1.2e-05 0.0013 11.4 0.0 2 72 102 171 101 201 0.70 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 565 NAD_binding_7 PF13241.1 103 3.6e-07 23.4 1.2 1 2 5.4e-05 0.0057 9.9 0.2 9 38 99 128 96 184 0.89 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 NAD_binding_7 PF13241.1 103 3.6e-07 23.4 1.2 2 2 1.4e-05 0.0015 11.8 0.1 8 41 270 306 264 380 0.74 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_7 - 228 N6_N4_Mtase PF01555.13 231 4.3e-36 117.5 0.0 1 2 7.6e-15 7.9e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 2_7 - 228 N6_N4_Mtase PF01555.13 231 4.3e-36 117.5 0.0 2 2 5.4e-25 5.7e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_40 - 518 AAA_17 PF13207.1 121 2.3e-05 18.2 0.2 1 1 2.1e-06 0.00011 16.0 0.0 1 24 227 255 227 345 0.72 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_12 - 262 AAA_17 PF13207.1 121 0.00012 15.9 0.0 1 1 3.1e-06 0.00017 15.4 0.0 2 38 102 133 101 232 0.74 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_14 - 211 ArsA_ATPase PF02374.10 305 0.0003 12.8 1.2 1 2 7.6e-06 0.0008 11.4 0.8 5 32 7 34 1 48 0.85 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 2_14 - 211 ArsA_ATPase PF02374.10 305 0.0003 12.8 1.2 2 2 0.04 4.2 -0.8 0.0 108 134 57 87 35 89 0.66 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_12 - 262 PhoH PF02562.11 205 1.3e-08 27.2 0.1 1 1 2.9e-10 3.1e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 MCM PF00493.18 331 0.00021 13.1 0.0 1 2 7.5e-06 0.00079 11.2 0.0 56 120 98 162 82 172 0.81 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 MCM PF00493.18 331 0.00021 13.1 0.0 2 2 0.034 3.6 -0.8 0.0 161 211 190 237 186 259 0.71 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 T2SE PF00437.15 272 2.5e-41 134.3 0.1 1 1 4.8e-43 5e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 518 G-alpha PF00503.15 389 0.00066 11.3 0.0 1 2 0.054 5.7 -1.6 0.0 234 272 70 113 29 117 0.79 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 518 G-alpha PF00503.15 389 0.00066 11.3 0.0 2 2 1.9e-05 0.002 9.8 0.0 58 87 225 254 214 325 0.84 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 565 NAD_binding_8 PF13450.1 68 3.7e-05 16.7 1.2 1 2 3.5e-07 3.7e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 NAD_binding_8 PF13450.1 68 3.7e-05 16.7 1.2 2 2 0.041 4.3 0.5 0.2 1 25 274 298 274 303 0.81 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 F420_oxidored PF03807.12 96 0.0074 9.7 4.1 1 2 0.0023 0.24 4.9 1.2 2 31 100 126 99 131 0.87 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 F420_oxidored PF03807.12 96 0.0074 9.7 4.1 2 2 0.0075 0.79 3.3 0.1 1 34 271 300 271 323 0.87 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_14 - 287 AAA_16 PF13191.1 185 1.4e-05 18.1 0.0 1 2 2.3e-05 0.00082 12.3 0.0 8 52 45 94 43 146 0.70 # 11652 # 12512 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_14 - 287 AAA_16 PF13191.1 185 1.4e-05 18.1 0.0 2 2 0.012 0.41 3.6 0.0 139 183 134 184 114 186 0.72 # 11652 # 12512 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_40 - 518 AAA_16 PF13191.1 185 9.8e-05 15.4 0.0 1 1 9.6e-06 0.00034 13.6 0.0 8 51 213 252 212 301 0.78 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_12 - 262 AAA_16 PF13191.1 185 0.00015 14.7 0.1 1 1 1e-05 0.00036 13.5 0.1 23 51 98 126 84 166 0.79 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 AAA_23 PF13476.1 202 0.00013 15.3 0.2 1 1 4.9e-06 0.00051 13.4 0.0 20 38 226 244 208 249 0.84 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 518 AAA_18 PF13238.1 129 0.00034 13.9 0.0 1 1 1.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_14 - 211 CbiA PF01656.18 195 6.6e-16 51.2 0.1 1 1 1.5e-17 1.6e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_40 - 518 AAA_14 PF13173.1 128 0.00082 12.3 0.0 1 1 3.7e-05 0.0039 10.1 0.0 5 30 228 254 225 286 0.80 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 565 HI0933_like PF03486.9 409 2.3e-08 25.8 3.7 1 2 1.2e-06 0.00013 13.5 2.5 2 33 99 130 98 138 0.91 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 HI0933_like PF03486.9 409 2.3e-08 25.8 3.7 2 2 7.2e-06 0.00076 10.9 0.0 82 164 284 366 276 385 0.83 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_12 - 262 AAA_29 PF13555.1 62 1.4e-05 17.5 0.0 1 1 5.6e-07 2.9e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 AAA_29 PF13555.1 62 2.9e-05 16.5 0.0 1 1 1.1e-06 6e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 565 FAD_binding_2 PF00890.19 417 4.5e-06 18.6 4.7 1 3 4.3e-08 4.5e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 FAD_binding_2 PF00890.19 417 4.5e-06 18.6 4.7 2 3 0.034 3.6 -0.8 0.1 143 204 311 369 297 388 0.72 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 FAD_binding_2 PF00890.19 417 4.5e-06 18.6 4.7 3 3 0.074 7.8 -1.9 0.0 376 402 388 408 377 424 0.82 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_12 - 262 AAA PF00004.24 132 1.1e-07 25.1 0.0 1 1 5.3e-09 1.9e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 AAA PF00004.24 132 0.00026 14.2 0.1 1 2 0.00098 0.034 7.3 0.0 1 21 228 248 228 278 0.83 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 518 AAA PF00004.24 132 0.00026 14.2 0.1 2 2 0.051 1.8 1.8 0.0 9 66 442 508 436 515 0.64 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_14 - 211 AAA PF00004.24 132 0.00087 12.5 0.0 1 1 4.3e-05 0.0015 11.7 0.0 8 38 13 55 9 104 0.73 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_12 - 262 Bac_DnaA PF00308.13 219 1.4e-10 34.2 0.0 1 1 2.1e-12 2.2e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 565 Pyr_redox_3 PF13738.1 203 1.3e-17 57.4 0.1 1 2 4.4e-14 4.7e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 Pyr_redox_3 PF13738.1 203 1.3e-17 57.4 0.1 2 2 9e-07 9.5e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_14 - 287 TniB PF05621.6 302 3.6e-201 659.2 5.6 1 1 3.8e-203 4e-201 659.0 5.6 1 285 1 285 1 286 1.00 # 11652 # 12512 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_63 - 764 TraG-D_C PF12696.2 128 5.5e-07 22.5 0.2 1 1 1.2e-08 1.2e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 54414 # 56705 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 2_14 - 211 AAA_31 PF13614.1 157 9.6e-07 21.8 0.0 1 2 8.4e-07 8.8e-05 15.5 0.0 2 44 4 46 4 61 0.86 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 2_14 - 211 AAA_31 PF13614.1 157 9.6e-07 21.8 0.0 2 2 0.0023 0.24 4.3 0.0 112 151 72 112 57 117 0.82 # 9437 # 10069 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_12 - 262 AAA_33 PF13671.1 143 0.00038 13.3 0.2 1 1 8.9e-06 0.00094 12.1 0.2 2 36 102 142 102 255 0.67 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 KTI12 PF08433.5 270 0.00018 13.7 0.4 1 2 6.4e-05 0.0067 8.6 0.0 4 81 102 172 101 174 0.68 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 KTI12 PF08433.5 270 0.00018 13.7 0.4 2 2 0.0037 0.39 2.8 0.1 34 59 232 257 212 261 0.77 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 DnaB_C PF03796.10 259 0.00016 13.6 0.0 1 1 2.4e-06 0.00025 12.9 0.0 16 55 96 135 85 158 0.90 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_7 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 1 2 2.6e-07 2.7e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 2_7 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 2 2 9.7e-08 1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_40 - 518 AAA_30 PF13604.1 196 0.00034 13.2 0.0 1 1 1.2e-05 0.00061 12.4 0.0 4 44 211 251 209 276 0.84 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_12 - 262 AAA_30 PF13604.1 196 0.00049 12.7 0.2 1 1 2.8e-05 0.0015 11.1 0.1 16 49 97 131 87 162 0.73 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_50 - 195 DNA_pol3_delta PF06144.8 172 2.2e-06 20.3 0.0 1 1 3e-08 3.2e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 42705 # 43289 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_40 - 518 ABC_tran PF00005.22 137 7.9e-05 16.0 0.0 1 1 2.7e-06 0.00028 14.2 0.0 12 37 226 251 217 288 0.81 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 565 K_oxygenase PF13434.1 341 6e-06 18.3 0.0 1 3 0.0039 0.41 2.4 0.0 187 220 94 125 59 130 0.79 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 K_oxygenase PF13434.1 341 6e-06 18.3 0.0 2 3 3.3e-06 0.00035 12.5 0.0 132 231 218 308 202 332 0.82 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 K_oxygenase PF13434.1 341 6e-06 18.3 0.0 3 3 0.057 6 -1.4 0.0 132 160 346 369 314 377 0.67 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_7 - 228 Cons_hypoth95 PF03602.10 183 9.1e-06 18.1 0.0 1 2 0.00027 0.028 6.8 0.0 112 168 18 76 9 83 0.68 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 2_7 - 228 Cons_hypoth95 PF03602.10 183 9.1e-06 18.1 0.0 2 2 4e-05 0.0042 9.4 0.0 41 62 162 183 145 218 0.78 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_40 - 518 DAP3 PF10236.4 309 0.00065 11.6 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_12 - 262 RuvB_N PF05496.7 234 0.00055 12.0 0.0 1 1 7.1e-06 0.00075 11.5 0.0 48 75 97 124 45 170 0.84 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 AAA_19 PF13245.1 76 3.9e-07 22.8 0.0 1 1 1.9e-08 1e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 AAA_19 PF13245.1 76 0.0001 15.1 0.0 1 1 5.3e-06 0.00028 13.7 0.0 10 46 226 259 218 268 0.79 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_51 - 372 AAA_10 PF12846.2 304 3.3e-18 59.1 0.0 1 1 1.3e-19 4.4e-18 58.7 0.0 127 302 50 254 9 255 0.84 # 43538 # 44653 # 1 # ID=1_51;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_63 - 764 AAA_10 PF12846.2 304 2.7e-05 16.7 1.0 1 1 2.4e-06 8.2e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 54414 # 56705 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_40 - 518 AAA_10 PF12846.2 304 0.00024 13.6 0.0 1 1 1.3e-05 0.00044 12.7 0.0 4 30 228 256 226 320 0.81 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 565 FAD_oxidored PF12831.2 428 3.1e-06 19.4 3.6 1 1 2.9e-08 3.1e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 DAO PF01266.19 358 4.4e-09 28.6 11.7 1 3 1.4e-08 1.4e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 DAO PF01266.19 358 4.4e-09 28.6 11.7 2 3 0.032 3.3 -0.6 0.1 3 31 273 301 271 307 0.75 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 DAO PF01266.19 358 4.4e-09 28.6 11.7 3 3 9.4e-07 9.9e-05 14.3 0.5 152 208 314 372 307 433 0.74 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 NAD_binding_9 PF13454.1 156 3e-05 16.8 2.8 1 3 0.0081 0.85 2.3 0.1 1 41 101 135 101 162 0.81 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 NAD_binding_9 PF13454.1 156 3e-05 16.8 2.8 2 3 0.034 3.5 0.3 0.0 134 155 218 241 202 242 0.72 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 NAD_binding_9 PF13454.1 156 3e-05 16.8 2.8 3 3 6.6e-06 0.0007 12.4 0.1 112 155 321 366 311 367 0.85 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_12 - 262 DUF815 PF05673.8 250 0.00023 13.1 0.0 1 1 3.6e-06 0.00038 12.4 0.0 23 76 65 122 46 139 0.79 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 565 Pyr_redox PF00070.22 80 3.8e-20 65.1 6.0 1 2 1.4e-06 0.00015 15.2 1.5 1 31 99 129 99 131 0.96 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 Pyr_redox PF00070.22 80 3.8e-20 65.1 6.0 2 2 6.2e-18 6.6e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_68 - 283 Methyltransf_27 PF13708.1 194 2.7e-67 219.0 0.0 1 1 3.6e-69 3.8e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 61419 # 62267 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_63 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 1 2 9.3e-05 0.0098 7.4 0.0 11 32 132 153 126 157 0.84 # 54414 # 56705 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_63 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 2 2 3e-05 0.0032 9.0 0.1 247 332 440 525 427 555 0.88 # 54414 # 56705 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_12 - 262 AAA_11 PF13086.1 236 0.00047 12.7 0.3 1 1 8.7e-06 0.00091 11.8 0.3 6 44 89 142 82 260 0.72 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 Sigma54_activ_2 PF14532.1 138 0.00031 13.8 0.1 1 1 7.7e-06 0.00081 12.4 0.0 3 44 79 122 77 151 0.81 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 287 AAA_32 PF13654.1 509 0.00015 13.5 0.1 1 2 6.6e-06 0.00069 11.3 0.0 8 81 34 112 26 124 0.86 # 11652 # 12512 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_14 - 287 AAA_32 PF13654.1 509 0.00015 13.5 0.1 2 2 0.02 2.2 -0.3 0.1 472 502 255 285 242 286 0.89 # 11652 # 12512 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 2_7 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.7 0.0 1 2 0.014 1.5 1.1 0.0 175 188 18 31 8 91 0.80 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 2_7 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.7 0.0 2 2 4e-05 0.0042 9.5 0.0 20 46 163 189 148 197 0.78 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_19 - 565 AlaDh_PNT_C PF01262.16 168 2.5e-05 16.9 3.1 1 2 0.00051 0.054 6.0 0.8 15 50 92 127 89 130 0.90 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_19 - 565 AlaDh_PNT_C PF01262.16 168 2.5e-05 16.9 3.1 2 2 2.1e-05 0.0022 10.5 0.1 16 58 265 307 257 339 0.84 # 15586 # 17280 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_12 - 262 NACHT PF05729.7 166 0.0013 11.4 2.1 1 2 5.9e-05 0.0062 9.2 0.3 3 23 102 122 100 148 0.84 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 NACHT PF05729.7 166 0.0013 11.4 2.1 2 2 0.012 1.2 1.7 0.1 80 127 156 200 139 221 0.76 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_1 - 236 AAA_25 PF13481.1 194 5.5e-25 80.8 0.0 1 1 2.1e-26 7.5e-25 80.4 0.0 48 193 1 140 1 141 0.86 # 135 # 842 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 1_12 - 262 AAA_25 PF13481.1 194 0.00011 14.6 0.0 1 1 5.4e-06 0.00019 13.8 0.0 29 57 95 123 76 170 0.86 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 518 AAA_25 PF13481.1 194 0.00029 13.2 0.1 1 2 0.00013 0.0046 9.3 0.0 25 65 217 260 200 270 0.72 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 518 AAA_25 PF13481.1 194 0.00029 13.2 0.1 2 2 0.058 2 0.7 0.0 153 190 297 337 292 340 0.74 # 33109 # 34662 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_7 - 228 Methyltransf_15 PF09445.5 164 0.00083 11.9 0.0 1 2 0.045 4.7 -0.3 0.0 53 79 4 29 2 32 0.90 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 2_7 - 228 Methyltransf_15 PF09445.5 164 0.00083 11.9 0.0 2 2 4.2e-05 0.0045 9.5 0.0 3 31 166 194 164 209 0.86 # 4804 # 5487 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_12 - 262 AAA_28 PF13521.1 163 9.4e-06 18.6 1.1 1 1 4.6e-07 4.8e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 262 AAA_5 PF07728.9 139 0.0002 14.1 0.2 1 1 4.3e-06 0.00045 12.9 0.2 1 19 101 119 101 243 0.78 # 9255 # 10040 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/873a4ed1-3def-4023-8d5a-2dcbffaa94a8 # Target file: checkm_output/bins/pm1707/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1707/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/873a4ed1-3def-4023-8d5a-2dcbffaa94a8 checkm_output/bins/pm1707/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:46 2020 # [ok]