# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_41 - 351 Mg_chelatase PF01078.16 207 0.00016 15.4 0.0 1 2 0.0021 0.34 4.6 0.0 25 47 104 126 99 158 0.76 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 2_41 - 351 Mg_chelatase PF01078.16 207 0.00016 15.4 0.0 2 2 0.00016 0.025 8.2 0.0 109 164 170 226 165 244 0.83 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 Mg_chelatase PF01078.16 207 0.0016 12.1 0.0 1 1 2.1e-05 0.0034 11.1 0.0 23 43 100 120 96 153 0.86 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_125 - 211 RrnaAD PF00398.15 262 7.6e-05 16.3 0.0 1 1 3.1e-07 9.9e-05 16.0 0.0 49 94 100 146 75 176 0.82 # 111078 # 111710 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 2_19 - 456 Seryl_tRNA_N PF02403.17 108 0.0009 13.8 6.7 1 1 5.5e-06 0.0018 12.9 6.7 17 87 77 149 61 167 0.84 # 15498 # 16865 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 6_5 - 262 IstB_IS21 PF01695.12 178 9.9e-69 224.8 0.1 1 1 4.1e-71 1.3e-68 224.4 0.1 2 177 55 230 54 231 0.98 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_2 - 416 MipZ PF09140.6 261 2.2e-12 41.1 2.4 1 2 6e-10 1.9e-07 24.9 0.2 1 40 115 157 115 189 0.83 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 2_2 - 416 MipZ PF09140.6 261 2.2e-12 41.1 2.4 2 2 7.3e-07 0.00023 14.8 0.0 93 130 253 290 231 301 0.83 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 2_2 - 416 YhjQ PF06564.7 244 0.00021 15.3 0.3 1 2 8.2e-05 0.026 8.4 0.1 4 44 117 160 115 168 0.73 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 2_2 - 416 YhjQ PF06564.7 244 0.00021 15.3 0.3 2 2 0.0012 0.37 4.6 0.0 113 147 255 288 229 300 0.83 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 2_37 - 600 UvrD_C_2 PF13538.1 104 2.5e-10 35.0 0.0 1 1 3.8e-12 6.1e-10 33.8 0.0 44 103 494 563 463 564 0.84 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_54 - 223 UvrD_C_2 PF13538.1 104 1.6e-06 22.8 0.0 1 1 1.8e-08 2.9e-06 22.0 0.0 60 104 127 177 93 177 0.84 # 41488 # 42156 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 1_99 - 276 Usp PF00582.21 140 3.8e-35 115.7 0.2 1 2 6.6e-21 2.1e-18 61.4 0.2 1 140 1 152 1 152 0.91 # 86917 # 87744 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_99 - 276 Usp PF00582.21 140 3.8e-35 115.7 0.2 2 2 9.8e-17 3.1e-14 47.9 0.0 49 140 197 275 158 275 0.73 # 86917 # 87744 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 2_41 - 351 AAA_2 PF07724.9 171 2.2e-07 25.5 0.0 1 1 1.8e-09 5.8e-07 24.1 0.0 6 83 104 182 100 188 0.69 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_67 - 709 DUF87 PF01935.12 229 4.1e-07 24.5 0.0 1 1 3.7e-09 1.2e-06 23.1 0.0 10 68 201 257 196 298 0.87 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 6_2 - 287 AAA_22 PF13401.1 131 1.2e-16 55.6 0.0 1 1 4e-18 2.2e-16 54.8 0.0 7 126 64 190 59 194 0.94 # 566 # 1426 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_67 - 709 AAA_22 PF13401.1 131 2.5e-06 22.2 0.1 1 2 0.00012 0.0064 11.2 0.0 5 57 214 261 213 352 0.79 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 1_67 - 709 AAA_22 PF13401.1 131 2.5e-06 22.2 0.1 2 2 0.0011 0.061 8.0 0.0 48 113 482 540 449 559 0.68 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 6_5 - 262 AAA_22 PF13401.1 131 8.8e-06 20.5 0.1 1 2 1.7e-05 0.00089 14.0 0.2 2 28 97 123 96 159 0.74 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 AAA_22 PF13401.1 131 8.8e-06 20.5 0.1 2 2 0.012 0.67 4.7 0.0 87 117 151 196 132 204 0.62 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_115 - 164 AAA_22 PF13401.1 131 0.00025 15.8 1.0 1 2 5.2e-05 0.0028 12.4 0.1 7 22 35 50 32 71 0.89 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 1_115 - 164 AAA_22 PF13401.1 131 0.00025 15.8 1.0 2 2 0.068 3.6 2.3 0.1 91 125 79 112 56 118 0.81 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 2_37 - 600 AAA_22 PF13401.1 131 0.00028 15.6 0.4 1 1 0.00015 0.0079 10.9 0.0 7 55 19 66 14 127 0.70 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_41 - 351 AAA_22 PF13401.1 131 0.00046 14.9 0.2 1 1 0.00013 0.0069 11.1 0.2 7 37 104 137 101 194 0.73 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 3_26 - 472 DNA_methylase PF00145.12 335 1.2e-79 262.3 0.0 1 1 5.9e-82 1.9e-79 261.7 0.0 1 332 96 458 96 461 0.88 # 20682 # 22097 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 2_41 - 351 DNA_pol3_delta2 PF13177.1 162 0.0017 12.6 0.0 1 1 1.2e-05 0.0039 11.4 0.0 10 96 92 185 84 200 0.71 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 2_41 - 351 AAA_3 PF07726.6 131 0.0001 16.5 0.0 1 1 1.1e-06 0.00017 15.7 0.0 3 87 105 192 103 225 0.86 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 AAA_3 PF07726.6 131 0.0016 12.6 0.0 1 1 2.4e-05 0.0039 11.4 0.0 2 72 102 171 101 201 0.70 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_163 - 415 N6_N4_Mtase PF01555.13 231 1e-27 91.6 0.0 1 1 4.8e-30 1.5e-27 91.1 0.0 1 227 128 388 128 392 0.90 # 135332 # 136576 # -1 # ID=1_163;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_41 - 351 AAA_17 PF13207.1 121 0.00013 17.3 0.0 1 1 3.6e-06 0.00058 15.2 0.0 2 47 104 154 104 213 0.67 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 AAA_17 PF13207.1 121 0.00036 15.9 0.0 1 1 3.1e-06 0.0005 15.4 0.0 2 38 102 133 101 232 0.74 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_90 - 370 ADH_zinc_N_2 PF13602.1 127 1.2e-05 20.7 0.0 1 1 9.8e-08 3.1e-05 19.4 0.0 2 121 231 362 230 363 0.62 # 75625 # 76734 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_90 - 370 ADH_zinc_N PF00107.21 130 1.6e-22 74.0 0.1 1 1 8.3e-25 2.7e-22 73.3 0.1 1 128 197 330 197 332 0.86 # 75625 # 76734 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_2 - 416 ArsA_ATPase PF02374.10 305 3e-06 21.0 1.1 1 1 2.9e-08 9.3e-06 19.4 0.2 8 136 122 268 115 273 0.63 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 PhoH PF02562.11 205 4e-08 27.2 0.1 1 1 1.2e-09 9.4e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_37 - 600 PhoH PF02562.11 205 4.7e-06 20.5 0.5 1 3 0.0024 0.19 5.4 0.0 5 40 4 37 1 77 0.74 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 PhoH PF02562.11 205 4.7e-06 20.5 0.5 2 3 0.00028 0.023 8.5 0.0 100 176 172 245 128 260 0.72 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 PhoH PF02562.11 205 4.7e-06 20.5 0.5 3 3 0.012 0.99 3.1 0.1 61 107 397 443 387 457 0.83 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_115 - 164 PhoH PF02562.11 205 0.0015 12.3 0.0 1 1 3.3e-05 0.0026 11.5 0.0 11 37 24 50 14 58 0.80 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 1_12 - 381 PhoH PF02562.11 205 0.004 10.9 0.0 1 1 7.9e-05 0.0063 10.3 0.0 17 56 154 194 147 206 0.83 # 7049 # 8191 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 6_5 - 262 MCM PF00493.18 331 0.00065 13.1 0.0 1 2 7.5e-06 0.0024 11.2 0.0 56 120 98 162 82 172 0.81 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 MCM PF00493.18 331 0.00065 13.1 0.0 2 2 0.034 11 -0.8 0.0 161 211 190 237 186 259 0.71 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_115 - 164 T2SE PF00437.15 272 0.0034 10.8 0.0 1 1 1.6e-05 0.0052 10.2 0.0 114 149 19 53 3 66 0.82 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 416 Fer4_NifH PF00142.13 273 9.4e-05 16.2 0.0 1 1 6.8e-07 0.00022 15.0 0.0 8 77 123 197 115 206 0.73 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 6_2 - 287 AAA_16 PF13191.1 185 4.4e-05 18.1 0.0 1 2 2.3e-05 0.0025 12.3 0.0 8 52 45 94 43 146 0.70 # 566 # 1426 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 6_2 - 287 AAA_16 PF13191.1 185 4.4e-05 18.1 0.0 2 2 0.012 1.2 3.6 0.0 139 183 134 184 114 186 0.72 # 566 # 1426 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 6_5 - 262 AAA_16 PF13191.1 185 0.00046 14.7 0.1 1 1 1e-05 0.0011 13.5 0.1 23 51 98 126 84 166 0.79 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_115 - 164 AAA_16 PF13191.1 185 0.0005 14.6 0.2 1 1 9.2e-06 0.00099 13.7 0.0 21 43 29 51 19 69 0.82 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 2_41 - 351 AAA_18 PF13238.1 129 3.7e-05 18.6 0.5 1 1 6.5e-07 0.0001 17.2 0.0 1 81 104 176 104 206 0.66 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_67 - 709 AAA_18 PF13238.1 129 0.0027 12.6 0.0 1 1 3.6e-05 0.0058 11.5 0.0 2 38 217 256 217 291 0.79 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 2_2 - 416 CbiA PF01656.18 195 1.1e-23 78.2 0.1 1 1 5.4e-26 1.7e-23 77.6 0.1 1 190 117 359 117 364 0.74 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 AAA_29 PF13555.1 62 4.4e-05 17.5 0.0 1 1 5.6e-07 9e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_115 - 164 AAA_29 PF13555.1 62 0.0032 11.6 0.0 1 1 3.8e-05 0.006 10.7 0.0 26 40 35 49 21 65 0.76 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 6_5 - 262 AAA PF00004.24 132 3.3e-07 25.1 0.0 1 1 3.5e-09 5.7e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_41 - 351 AAA PF00004.24 132 5.3e-06 21.2 0.0 1 1 8.7e-08 1.4e-05 19.9 0.0 1 74 104 183 104 195 0.70 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 Bac_DnaA PF00308.13 219 4.1e-10 34.2 0.0 1 1 2.1e-12 6.6e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_1 - 139 Ribosomal_S8 PF00410.14 129 0.0042 11.5 1.8 1 2 0.0059 1.9 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 5_1 - 139 Ribosomal_S8 PF00410.14 129 0.0042 11.5 1.8 2 2 0.00012 0.039 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 2_37 - 600 UvrD_C PF13361.1 351 1.7e-40 134.1 0.0 1 1 8e-43 2.6e-40 133.5 0.0 1 349 253 566 253 568 0.87 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_41 - 351 Sigma54_activat PF00158.21 168 0.00023 15.2 0.0 1 1 1.3e-05 0.0043 11.1 0.0 21 120 100 194 83 225 0.73 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_2 - 287 TniB PF05621.6 302 1.1e-200 659.2 5.6 1 1 3.8e-203 1.2e-200 659.0 5.6 1 285 1 285 1 286 1.00 # 566 # 1426 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_115 - 164 DUF258 PF03193.11 161 0.0029 11.3 0.0 1 1 1.1e-05 0.0037 11.0 0.0 34 59 30 56 3 85 0.73 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 1_67 - 709 TraG-D_C PF12696.2 128 2.9e-12 41.1 2.3 1 1 1.6e-14 5.2e-12 40.3 1.4 1 100 518 623 518 643 0.81 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 2_2 - 416 AAA_31 PF13614.1 157 1.8e-07 25.8 0.2 1 1 6.9e-09 2.2e-06 22.2 0.1 2 128 116 269 115 293 0.78 # 284 # 1531 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 AAA_33 PF13671.1 143 0.0012 13.3 0.2 1 1 8.9e-06 0.0029 12.1 0.2 2 36 102 142 102 255 0.67 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 KTI12 PF08433.5 270 0.00056 13.7 0.4 1 2 6.4e-05 0.021 8.6 0.0 4 81 102 172 101 174 0.68 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 KTI12 PF08433.5 270 0.00056 13.7 0.4 2 2 0.0037 1.2 2.8 0.1 34 59 232 257 212 261 0.77 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 DnaB_C PF03796.10 259 0.00048 13.6 0.0 1 1 2.4e-06 0.00078 12.9 0.0 16 55 96 135 85 158 0.90 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_163 - 415 Methyltransf_26 PF13659.1 117 2.3e-05 19.0 0.0 1 2 1.3e-06 0.00042 14.9 0.0 59 114 117 179 35 182 0.73 # 135332 # 136576 # -1 # ID=1_163;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_163 - 415 Methyltransf_26 PF13659.1 117 2.3e-05 19.0 0.0 2 2 0.02 6.4 1.4 0.0 3 21 355 373 353 406 0.72 # 135332 # 136576 # -1 # ID=1_163;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_90 - 370 2-Hacid_dh_C PF02826.14 178 0.0023 11.6 0.1 1 1 1.3e-05 0.0041 10.8 0.1 36 73 187 225 176 237 0.82 # 75625 # 76734 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_37 - 600 AAA_30 PF13604.1 196 7.2e-08 26.8 0.0 1 2 6.5e-07 0.0001 16.4 0.0 4 82 6 92 3 111 0.75 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 AAA_30 PF13604.1 196 7.2e-08 26.8 0.0 2 2 0.00024 0.038 8.1 0.0 95 133 191 228 173 282 0.82 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 6_5 - 262 AAA_30 PF13604.1 196 0.0015 12.7 0.2 1 1 2.8e-05 0.0045 11.1 0.1 16 49 97 131 87 162 0.73 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_67 - 709 FtsK_SpoIIIE PF01580.13 205 0.00012 16.2 0.2 1 2 5.1e-06 0.0016 12.4 0.0 33 80 205 251 175 257 0.82 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 1_67 - 709 FtsK_SpoIIIE PF01580.13 205 0.00012 16.2 0.2 2 2 0.016 5.3 1.0 0.1 175 204 527 556 514 557 0.85 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 1_90 - 370 Met_10 PF02475.11 200 0.0022 12.2 0.0 1 1 1.2e-05 0.0038 11.4 0.0 98 143 183 229 178 278 0.85 # 75625 # 76734 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_115 - 164 ABC_tran PF00005.22 137 0.0012 13.7 0.0 1 1 4.8e-06 0.0015 13.4 0.0 14 42 35 64 26 115 0.80 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 6_5 - 262 RuvB_N PF05496.7 234 0.0017 12.0 0.0 1 1 7.1e-06 0.0023 11.5 0.0 48 75 97 124 45 170 0.84 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 AAA_19 PF13245.1 76 1.2e-06 22.8 0.0 1 1 1.9e-08 3.1e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_37 - 600 AAA_19 PF13245.1 76 2e-06 22.1 0.0 1 1 2.5e-08 3.9e-06 21.1 0.0 10 75 17 86 9 87 0.79 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_23 - 906 AAA_10 PF12846.2 304 1.5e-57 189.9 0.0 1 1 4.2e-59 3.4e-57 188.7 0.0 1 296 462 811 462 820 0.91 # 18988 # 21705 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 1_67 - 709 AAA_10 PF12846.2 304 2.3e-20 67.8 0.0 1 1 8.3e-22 6.7e-20 66.2 0.0 2 295 214 591 213 597 0.73 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 1_115 - 164 AAA_10 PF12846.2 304 0.00082 13.4 0.0 1 1 1.2e-05 0.00098 13.1 0.0 2 22 33 53 32 85 0.86 # 105444 # 105935 # -1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.439 2_37 - 600 AAA_10 PF12846.2 304 0.0016 12.4 0.1 1 1 4.6e-05 0.0037 11.2 0.0 3 28 18 43 16 61 0.85 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_54 - 223 AAA_12 PF13087.1 200 5.3e-12 40.1 0.0 1 1 1.4e-13 2.3e-11 38.0 0.0 23 198 24 179 9 181 0.76 # 41488 # 42156 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_37 - 600 AAA_12 PF13087.1 200 6.8e-05 16.8 0.1 1 3 0.019 3 1.7 0.0 111 152 45 86 4 88 0.83 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 AAA_12 PF13087.1 200 6.8e-05 16.8 0.1 2 3 0.037 6 0.7 0.0 6 48 241 283 238 339 0.76 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 AAA_12 PF13087.1 200 6.8e-05 16.8 0.1 3 3 4.5e-05 0.0072 10.2 0.0 135 196 496 564 375 568 0.78 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_111 - 743 ThiF PF00899.16 136 4.9e-12 40.4 0.0 1 1 3.6e-14 1.2e-11 39.2 0.0 6 107 371 474 367 490 0.87 # 101400 # 103628 # 1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 2_37 - 600 Viral_helicase1 PF01443.13 234 3.4e-06 21.3 0.0 1 2 0.0015 0.24 5.4 0.0 2 51 20 71 19 87 0.57 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 Viral_helicase1 PF01443.13 234 3.4e-06 21.3 0.0 2 2 7.6e-06 0.0012 12.9 0.0 175 232 499 563 490 564 0.87 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 1_54 - 223 Viral_helicase1 PF01443.13 234 2.9e-05 18.2 0.0 1 1 2.2e-07 3.6e-05 17.9 0.0 183 233 121 177 76 178 0.82 # 41488 # 42156 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_41 - 351 TIP49 PF06068.8 398 0.0008 12.7 0.0 1 1 5e-06 0.0016 11.7 0.0 41 83 93 134 89 141 0.80 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 16_1 - 59 Methyltransf_3 PF01596.12 205 0.0025 11.4 0.0 1 1 8.6e-06 0.0028 11.3 0.0 8 49 12 53 4 55 0.90 # 3 # 179 # 1 # ID=16_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 6_5 - 262 DUF815 PF05673.8 250 0.00071 13.1 0.0 1 1 3.6e-06 0.0012 12.4 0.0 23 76 65 122 46 139 0.79 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_67 - 709 DUF853 PF05872.7 504 1.3e-05 18.3 0.0 1 1 8.8e-08 2.8e-05 17.1 0.0 12 60 204 252 195 260 0.87 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 1_147 - 319 Methyltransf_27 PF13708.1 194 1.2e-57 189.2 0.1 1 1 1.7e-59 2.8e-57 187.9 0.1 2 194 118 314 117 314 0.94 # 121382 # 122338 # -1 # ID=1_147;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 1_35 - 265 Methyltransf_27 PF13708.1 194 1.5e-23 77.9 0.5 1 1 1.2e-25 1.9e-23 77.5 0.5 5 189 70 255 66 260 0.87 # 28276 # 29070 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.399 1_67 - 709 TrwB_AAD_bind PF10412.4 386 5.7e-19 62.5 0.0 1 2 1.9e-08 6e-06 19.6 0.0 16 130 214 335 201 357 0.75 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 1_67 - 709 TrwB_AAD_bind PF10412.4 386 5.7e-19 62.5 0.0 2 2 8.5e-15 2.7e-12 40.5 0.1 205 371 473 650 464 661 0.76 # 57790 # 59916 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.463 6_5 - 262 AAA_11 PF13086.1 236 0.0014 12.7 0.3 1 1 8.7e-06 0.0028 11.8 0.3 6 44 89 142 82 260 0.72 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 Sigma54_activ_2 PF14532.1 138 0.00095 13.8 0.1 1 1 1.5e-05 0.0025 12.4 0.0 3 44 79 122 77 151 0.81 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_43 - 175 Sigma54_activ_2 PF14532.1 138 0.0025 12.4 0.5 1 1 7.1e-05 0.011 10.3 0.5 63 124 108 173 69 174 0.64 # 30178 # 30702 # 1 # ID=3_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 6_2 - 287 AAA_32 PF13654.1 509 0.00044 13.5 0.1 1 2 6.6e-06 0.0021 11.3 0.0 8 81 34 112 26 124 0.86 # 566 # 1426 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 6_2 - 287 AAA_32 PF13654.1 509 0.00044 13.5 0.1 2 2 0.02 6.6 -0.3 0.1 472 502 255 285 242 286 0.89 # 566 # 1426 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_125 - 211 TIGR00755 TIGR00755 256 0.00015 15.3 0.2 1 2 0.026 8.4 -0.2 0.0 95 108 59 72 24 86 0.79 # 111078 # 111710 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_125 - 211 TIGR00755 TIGR00755 256 0.00015 15.3 0.2 2 2 1.6e-06 0.00052 13.6 0.1 36 87 87 140 70 152 0.83 # 111078 # 111710 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 2_41 - 351 RNA_helicase PF00910.17 107 9.2e-05 17.2 0.1 1 1 1.6e-06 0.0005 14.8 0.0 1 64 104 182 104 192 0.81 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_90 - 370 TrkA_N PF02254.13 116 7.7e-05 17.3 0.0 1 1 3.9e-07 0.00013 16.6 0.0 1 46 190 237 190 279 0.85 # 75625 # 76734 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_90 - 370 AlaDh_PNT_C PF01262.16 168 0.0016 12.6 0.6 1 1 2.1e-05 0.0068 10.5 0.1 15 69 181 237 171 249 0.84 # 75625 # 76734 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_37 - 600 UvrD-helicase PF00580.16 315 2e-32 107.2 2.0 1 2 1.9e-15 6.1e-13 43.2 0.0 2 109 5 95 4 127 0.88 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_37 - 600 UvrD-helicase PF00580.16 315 2e-32 107.2 2.0 2 2 1.6e-21 5.1e-19 63.2 0.6 211 314 148 248 135 249 0.90 # 37965 # 39764 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_41 - 351 NACHT PF05729.7 166 0.0032 11.7 0.1 1 1 5.8e-05 0.0093 10.2 0.0 3 21 104 122 103 128 0.85 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 NACHT PF05729.7 166 0.0039 11.4 2.1 1 2 0.00012 0.019 9.2 0.3 3 23 102 122 100 148 0.84 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 NACHT PF05729.7 166 0.0039 11.4 2.1 2 2 0.023 3.7 1.7 0.1 80 127 156 200 139 221 0.76 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_5 - 262 AAA_25 PF13481.1 194 0.00035 14.6 0.0 1 1 1.8e-06 0.00057 13.8 0.0 29 57 95 123 76 170 0.86 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_125 - 211 Spermine_synth PF01564.12 246 4.6e-05 17.0 0.1 1 1 2.1e-07 6.7e-05 16.4 0.1 79 157 83 154 57 160 0.87 # 111078 # 111710 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 6_5 - 262 AAA_28 PF13521.1 163 2.9e-05 18.6 1.1 1 1 4.6e-07 0.00015 16.3 0.8 1 24 101 124 101 239 0.90 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_41 - 351 AAA_5 PF07728.9 139 5.4e-33 108.2 0.0 1 1 6.1e-35 9.8e-33 107.4 0.0 2 139 104 243 103 243 0.94 # 42511 # 43563 # 1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_5 - 262 AAA_5 PF07728.9 139 0.00061 14.1 0.2 1 1 8.6e-06 0.0014 12.9 0.2 1 19 101 119 101 243 0.78 # 4654 # 5439 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d3d44d23-c797-4547-98a4-b24186dad381 # Target file: checkm_output/bins/pm1697/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1697/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d3d44d23-c797-4547-98a4-b24186dad381 checkm_output/bins/pm1697/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:36 2020 # [ok]