# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 1234 UPF0020 PF01170.13 180 4.7e-09 28.3 0.0 1 2 1.9e-08 1.2e-06 20.5 0.0 31 75 307 360 300 369 0.78 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 1_8 - 1234 UPF0020 PF01170.13 180 4.7e-09 28.3 0.0 2 2 0.001 0.067 5.0 0.0 90 135 491 532 475 551 0.68 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 3_7 - 207 cobW PF02492.14 178 0.00016 13.4 0.2 1 2 1.8e-05 0.0012 10.6 0.0 10 38 12 41 3 47 0.86 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 cobW PF02492.14 178 0.00016 13.4 0.2 2 2 0.019 1.3 0.7 0.1 114 146 115 147 71 170 0.78 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_10 - 692 IstB_IS21 PF01695.12 178 9.2e-05 14.2 0.0 1 1 3.1e-06 0.0002 13.1 0.0 41 63 227 249 210 252 0.86 # 15646 # 17721 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_7 - 207 MipZ PF09140.6 261 1.2e-14 46.3 0.9 1 2 2.6e-11 8.5e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 MipZ PF09140.6 261 1.2e-14 46.3 0.9 2 2 1.6e-06 5.3e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 402 MipZ PF09140.6 261 1.2e-06 20.0 0.0 1 2 0.0053 0.17 3.1 0.0 3 50 111 163 109 193 0.73 # 7389 # 8594 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_8 - 402 MipZ PF09140.6 261 1.2e-06 20.0 0.0 2 2 1.7e-06 5.6e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 7389 # 8594 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 3_7 - 207 DUF1611 PF07755.6 301 2.4e-06 18.6 0.3 1 1 5.8e-08 3.8e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 ATP_bind_1 PF03029.12 238 3e-05 15.9 0.0 1 1 8.4e-07 5.4e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_10 - 692 ChlI PF13541.1 121 1.5e-06 20.1 0.2 1 1 7.6e-08 5e-06 18.4 0.0 62 120 598 656 570 657 0.89 # 15646 # 17721 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_7 - 207 SRP54 PF00448.17 196 6.9e-05 14.6 0.4 1 1 3.6e-06 0.00023 12.9 0.3 11 54 12 50 2 142 0.73 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_6 - 1226 KAP_NTPase PF07693.9 325 5.3e-05 14.6 0.0 1 1 2.6e-06 0.00017 12.9 0.0 15 71 62 152 50 224 0.82 # 3798 # 7475 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 3_7 - 207 AAA_17 PF13207.1 121 5.5e-05 16.3 0.0 1 1 1.1e-06 7.5e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_6 - 1226 AAA_21 PF13304.1 303 0.0034 9.6 5.5 1 2 2e-05 0.0013 11.0 0.6 9 74 77 142 77 246 0.47 # 3798 # 7475 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_6 - 1226 AAA_21 PF13304.1 303 0.0034 9.6 5.5 2 2 0.06 3.9 -0.4 0.4 115 196 496 576 454 615 0.60 # 3798 # 7475 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 3_7 - 207 MobB PF03205.9 140 1.7e-06 20.1 0.4 1 1 1.4e-07 8.8e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 LpxK PF02606.9 326 3.5e-05 15.1 0.1 1 1 8.4e-07 5.4e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 ArsA_ATPase PF02374.10 305 1.9e-08 26.0 0.2 1 1 4.8e-10 3.1e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 VirC1 PF07015.6 231 4.8e-15 47.5 0.2 1 1 1.5e-16 9.7e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 Fer4_NifH PF00142.13 273 1e-06 20.4 0.0 1 1 2.8e-08 1.8e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 CbiA PF01656.18 195 6.8e-29 92.9 1.6 1 1 5.3e-30 1.7e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 402 CbiA PF01656.18 195 9.8e-19 59.8 0.0 1 1 5.6e-20 1.8e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 7389 # 8594 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 6_3 - 129 Ribosomal_S20p PF01649.13 84 0.00018 14.2 0.1 1 1 4.8e-06 0.00031 13.4 0.1 6 59 56 109 53 118 0.75 # 211 # 597 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.00086 11.5 1.8 1 2 0.0059 0.38 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.00086 11.5 1.8 2 2 0.00012 0.0079 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_8 - 1234 N6_Mtase PF02384.11 311 7.1e-13 40.5 0.0 1 2 6.6e-08 4.3e-06 18.2 0.0 40 102 299 371 262 388 0.81 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 1_8 - 1234 N6_Mtase PF02384.11 311 7.1e-13 40.5 0.0 2 2 2.3e-08 1.5e-06 19.7 0.0 122 259 500 638 468 650 0.74 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 3_7 - 207 AAA_31 PF13614.1 157 1.1e-08 27.4 0.3 1 2 1.9e-08 6.1e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 AAA_31 PF13614.1 157 1.1e-08 27.4 0.3 2 2 0.0093 0.3 3.3 0.0 115 152 74 109 58 114 0.83 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 402 AAA_31 PF13614.1 157 6.2e-05 15.3 0.0 1 1 1.1e-05 0.00035 12.8 0.0 108 147 235 273 230 279 0.86 # 7389 # 8594 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 3_7 - 207 NTPase_1 PF03266.10 168 0.00024 13.1 0.1 1 1 1.1e-05 0.00074 11.5 0.0 7 58 10 66 5 94 0.80 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_8 - 1234 Methyltransf_26 PF13659.1 117 2.9e-15 48.7 0.0 1 1 1.9e-16 1.2e-14 46.6 0.0 3 107 307 552 305 562 0.68 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 3_7 - 207 AAA_30 PF13604.1 196 0.00023 13.1 0.4 1 1 7.4e-06 0.00048 12.0 0.1 26 106 10 88 2 97 0.75 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_10 - 692 Lon_C PF05362.8 205 4.5e-17 54.3 0.0 1 1 1.4e-18 8.8e-17 53.3 0.0 44 200 529 686 505 690 0.86 # 15646 # 17721 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_8 - 1234 Eco57I PF07669.6 106 4.5e-09 29.0 0.0 1 1 4.9e-10 3.2e-08 26.2 0.0 2 100 503 606 502 611 0.85 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 3_7 - 207 AAA_10 PF12846.2 304 8.5e-06 17.6 0.0 1 1 2.3e-07 1.5e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_8 - 1234 Methyltransf_31 PF13847.1 152 7.5e-05 14.7 0.0 1 1 3e-06 0.00019 13.3 0.0 3 38 304 356 302 362 0.67 # 9271 # 12972 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.454 3_7 - 207 ArgK PF03308.11 267 7.1e-05 13.9 0.0 1 1 2.5e-06 0.00017 12.7 0.0 39 72 12 45 5 53 0.90 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 AAA_24 PF13479.1 213 0.00041 12.3 0.6 1 2 1.7e-05 0.0011 10.9 0.1 12 88 11 95 3 99 0.81 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_7 - 207 AAA_24 PF13479.1 213 0.00041 12.3 0.6 2 2 0.078 5 -1.1 0.0 168 206 118 156 115 164 0.79 # 6506 # 7126 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2a6d6c3a-c764-48c1-a361-d4e6d613f9f5 # Target file: checkm_output/bins/pm1687/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1687/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2a6d6c3a-c764-48c1-a361-d4e6d613f9f5 checkm_output/bins/pm1687/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:30 2020 # [ok]